Search Results

Search found 15224 results on 609 pages for 'parallel python'.

facebook twitter digg google delicious technorati stumbleupon myspace wordpress linkedin gmail igoogle windows live tumblr viadeo yahoo buzz yahoo mail yahoo bookmarks favorites email print

Page 162/609 | < Previous Page | 158 159 160 161 162 163 164 165 166 167 168 169  | Next Page >

  • Python/Biomolecular Physics- Trying to code a simple stochastic simulation of a system exhibiting co

    - by user359597
    *edited 6/17/10 I'm trying to understand how to improve my code (make it more pythonic). Also, I'm interested in writing more intuitive 'conditionals' that would describe scenarios that are commonplace in biochemistry. The conditional criteria in the below program is explained in Answer #2, but I am not satisfied with it- it is correct, but isn't obvious and isn't easy to implement for more complicated conditional scenarios. Ideas welcome. Comments/criticisms welcome. First posting experience @ stackoverflow- please comment on etiquette if needed. The code generates a list of values that are the solution to the following exercise: "In a programming language of your choice, implement Gillespie’s First Reaction Algorithm to study the temporal behaviour of the reaction A---B in which the transition from A to B can only take place if another compound, C, is present, and where C dynamically interconverts with D, as modelled in the Petri-net below. Assume that there are 100 molecules of A, 1 of C, and no B or D present at the start of the reaction. Set kAB to 0.1 s-1 and both kCD and kDC to 1.0 s-1. Simulate the behaviour of the system over 100 s." def sim(): # Set the rate constants for all transitions kAB = 0.1 kCD = 1.0 kDC = 1.0 # Set up the initial state A = 100 B = 0 C = 1 D = 0 # Set the start and end times t = 0.0 tEnd = 100.0 print "Time\t", "Transition\t", "A\t", "B\t", "C\t", "D" # Compute the first interval transition, interval = transitionData(A, B, C, D, kAB, kCD, kDC) # Loop until the end time is exceded or no transition can fire any more while t <= tEnd and transition >= 0: print t, '\t', transition, '\t', A, '\t', B, '\t', C, '\t', D t += interval if transition == 0: A -= 1 B += 1 if transition == 1: C -= 1 D += 1 if transition == 2: C += 1 D -= 1 transition, interval = transitionData(A, B, C, D, kAB, kCD, kDC) def transitionData(A, B, C, D, kAB, kCD, kDC): """ Returns nTransition, the number of the firing transition (0: A->B, 1: C->D, 2: D->C), and interval, the interval between the time of the previous transition and that of the current one. """ RAB = kAB * A * C RCD = kCD * C RDC = kDC * D dt = [-1.0, -1.0, -1.0] if RAB > 0.0: dt[0] = -math.log(1.0 - random.random())/RAB if RCD > 0.0: dt[1] = -math.log(1.0 - random.random())/RCD if RDC > 0.0: dt[2] = -math.log(1.0 - random.random())/RDC interval = 1e36 transition = -1 for n in range(len(dt)): if dt[n] > 0.0 and dt[n] < interval: interval = dt[n] transition = n return transition, interval if __name__ == '__main__': sim()

    Read the article

  • python class decorator question?

    - by nsharish
    decorator 1: def dec(f): def wrap(obj, *args, **kwargs): f(obj, *args,**kwargs) return wrap decorator 2: class dec: def __init__(self, f): self.f = f def __call__(self, obj, *args, **kwargs): self.f(obj, *args, **kwargs) A sample class, class Test: @dec def disp(self, *args, **kwargs): print(*args,**kwargs) The follwing code works with decorator 1 but not with decorator 2. a = Test() a.disp("Message") I dont understand why decorator 2 is not working here. Can someone help me with this?

    Read the article

  • python json_encode throws KeyError exception

    - by MattM
    In a unit test case that I am running, I get a KeyError exception on the 4th json object in the json text below. I went through the sub-objects and found that it was the "cpuid" object that is the offending object, but I am completely at a loss as to what is wrong with the formatting. response = self.app.post( '/machinestats', params=dict(record=self.json_encode([ {"type": "crash", "instance_id": "xxx", "version": "0.2.0", "build_id": "unknown", "crash_text": "Gah!"}, {"type": "machine_info", "machine_info": "I'm awesome.", "version": "0.2.0", "build_id": "unknown", "instance_id": "yyy"}, {"machine_info": "Soup", "crash_text": "boom!", "version": "0.2.0", "build_id": "unknown", "instance_id": "zzz", "type": "crash"}, {"build_id" : "unknown", "cpu_brand" : "intel", "cpu_count" : 4, "cpuid": { "00000000": {"eax" :123,"ebx" :456, "ecx" :789,"edx" :321}, "00000001": {"eax" :123,"ebx" :456, "ecx" :789,"edx" :321}}, "driver_installed" : True, "instance_id" : "yyy", "version" : "0.2.0", "machine_info" : "I'm awesome.", "os_version" : "linux", "physical_memory_mib" : 1024, "product_loaded" : True, "type" : "machine_info", "virtualization_advertised" : True} ])))

    Read the article

  • Best practice for string substition with gettext using Python

    - by Malcolm
    Looking for best practice advice on what string substitution technique to use when using gettext(). Or do all techniques apply equally? I can think of at least 3 string techniques: Classic "%" based formatting: "My name is %(name)s" % locals() .format() based formatting: "My name is {name}".format( locals() ) string.Template.safe_substitute() import string template = string.Template( "My name is ${name}" ) template.safe_substitute( locals() ) The advantage of the string.Template technique is that a translated string with with an incorrectly spelled variable reference can still yield a usable string value while the other techniques unconditionally raise an exception. The downside of the string.Template technique appears to be the inability for one to customize how a variable is formatted (padding, justification, width, etc).

    Read the article

  • Creating a simple command line interface (CLI) using a python server (TCP sock) and few scripts

    - by VN44CA
    I have a Linux box and I want to be able to telnet into it (port 77557) and run few required commands without having to access to the whole Linux box. So, I have a server listening on that port, and echos the entered command on the screen. (for now) Telnet 192.168.1.100 77557 Trying 192.168.1.100... Connected to 192.168.1.100. Escape character is '^]'. hello<br /> You typed: "hello"<br /> NOW: I want to create lot of commands that each take some args and have error codes. Anyone has done this before? It would be great if I can have the server upon initialization go through each directory and execute the init.py file and in turn, the init.py file of each command call into a main template lib API (e.g. RegisterMe()) and register themselves with the server as function call backs. At least this is how I would do it in C/C++. But I want the best Pythonic way of doing this. /cmd/ /cmd/myreboot/ /cmd/myreboot/ini.py (note underscore don't show for some reason) /cmd/mylist/ /cmd/mylist/init.py ... etc IN: /cmd/myreboot/_ini_.py: from myMainCommand import RegisterMe RegisterMe(name="reboot",args=Arglist, usage="Use this to reboot the box", desc="blabla") So, repeating this creates a list of commands and when you enter the command in the telnet session, then the server goes through the list, matches the command and passed the args to that command and the command does the job and print the success or failure to stdout. Thx

    Read the article

  • Working with OAuth on Google with Python

    - by Dan Loewenherz
    I'm having a very frustrating time creating a valid signature for Google's OAuth implementation. I have narrowed it all down to the fact that my signature-generation code has an error of some sort; what it is I have no idea. This is the signature base string in its entirety: GET&https%3A%2F%2Fwww.google.com%2Faccounts%2FOAuthGetAccessToken&oauth_consumer_key%3Ddlosplayground.appspot.com%26oauth_nonce%3D72815d55697cb24301fab03e1f7f1d66%26oauth_signature_method%3DHMAC-SHA1%26oauth_timestamp%3D1274327867%26oauth_token%3D4%252FX2cZ54JuseQbgRwzTBzZ7lqIwqof%26oauth_verifier%3Dihf0F2Fx%252FpnCmwbVQnk2xMre%26oauth_version%3D1.0 The OAuth Playground returns an oauth_signature of gF8qAfWjpdKjKb4KR%2FvA2Gy0vhU%3D. My code gives me ikMpIKJQJ58jseg%2BKPBTecjmYPE%3D, so obviously I'm doing something wrong. Here's my signature generation code (equivalent to that of the standard oauth.py library): binascii.b2a_base64(hmac.new(CONSUMER_SECRET, BASE_STRING, hashlib.sha1).digest())[:-1] Any thoughts?

    Read the article

  • Object-oriented GUI development in python

    - by ptabatt
    Hey guys, new programmer here. I have an assignment for class and I'm stuck... What I need to do is a create a GUI that gives someone a basic arithmetic problem in one box, asks the person to answer it, evaluates it, and tells you if you're right or wrong... Basically, what I have is this: [code] class Lesson(Frame): def init (self, parent=None): Frame.init(self, parent) self.pack() Lesson.make_widgets(self) def make_widgets(self): Label(self, text="").pack(side=TOP) ent = Entry(self) self.a = randrange(1,10) self.b = randrange(1,10) self.expr = choice(["+","-"]) ent.insert(END, str(self.a) + str(self.expr) + str(self.a)) [/code] I've broken this down into many little steps and basically, what I'm trying to do right now is insert a default random expression into the first entry widget. When I run this code, I just get a blank Label. Why is that? How can I put a something like "7+7" into the box? If you absolutely need background to the problem, it's question #3 on this link. http://reed.cs.depaul.edu/lperkovic/csc242/homeworks/Homework8.html -Thanks for all help in advance.

    Read the article

  • Python: Getting the attribute name that the created object will be given

    - by cool-RR
    Before I ask this, do note: I want this for debugging purposes. I know that this is going to be some bad black magic, but I want to use it just during debugging so I could identify my objects more easily. It's like this. I have some object from class A that creates a few B instances as attributes: class A(object): def __init__(self) self.vanilla_b = B() self.chocolate_b = B() class B(object): def __init__(self): # ... What I want is that in B.__init__, it will figure out the "vanilla_b" or whatever attribute name it was given, and then put that as the .name attribute to this specific B. Then in debugging when I see some B object floating around, I could know which one it is. Is there any way to do this?

    Read the article

  • Multiprocessing vs Threading Python

    - by John
    Hello, I am trying to understand the advantages of the module Multiprocessing over Threading. I know that Multiprocessing get's around the Global Interpreter Lock, but what other advantages are there, and can threading not do the same thing?

    Read the article

  • Python named print?

    - by Mark
    I know it's a really simple question, but I have no idea how to google it. how can I do print '<a href="%s">%s</a>' % (my_url) So that my_url is used twice? I assume I have to "name" the %s and then use a dict in the params, but I'm not sure of the proper syntax? just FYI, I'm aware I can just use my_url twice in the params, but that's not the point :)

    Read the article

  • Get class of caller's method (via inspect) in Python (alt: super() emulator)

    - by Slava Vishnyakov
    Is it possible to get reference to class B in this example? class A(object): pass class B(A): def test(self): test2() class C(B): pass import inspect def test2(): frame = inspect.currentframe().f_back cls = frame.[?something here?] # cls here should == B (class) c = C() c.test() Basically, C is child of B, B is child of A. Then we create c of type C. Then the call to c.test() actually calls B.test() (via inheritance), which calls to test2(). test2() can get the parent frame frame; code reference to method via frame.f_code; self via frame.f_locals['self']; but type(frame.f_locals['self']) is C (of course), but not B, where method is defined. Any way to get B?

    Read the article

  • Python - counting sign changes

    - by dadashek
    I have a list of numbers I am reading left to right. Anytime I encounter a sign change when reading the sequence I want to count it. X = [-3,2,7,-4,1,-1,1,6,-1,0,-2,1] X = [-, +, +, -, +, -, +, +, -, -,-,+] So, in this list there are 8 sign changes. When Item [0] (in this case -3) is negative it is considered a sign change. Also, any 0 in the list is considered [-]. Any help would be greatly appreciated.

    Read the article

  • Python: Access dictionary value inside of tuple and sort quickly by dict value

    - by Aquat33nfan
    I know that wasn't clear. Here's what I'm doing specifically. I have my list of dictionaries here: dict = [{int=0, value=A}, {int=1, value=B}, ... n] and I want to take them in combinations, so I used itertools and it gave me a tuple (Well, okay it gave me a memory object that I then used enumerate on so I could loop over it and enumerate gave ma tuple): for (index, tuple) in enumerate(combinations(dict, 2)): and this is where I have my problem. I want to identify which of the two items in the combination has the bigger 'int' value and which has the smaller value and assign them to variables (I'm actually using more than 2 in the combination so I can't just say if tuple[0]['int'] tuple[1]['int'] and do the assignment because I'd have to list this out a bunch of times and that's hard to manage). I was going to assign each 'int' value to a variable, sort it in a list, index the 'int' value in the list by 1, 2, 3, 4, 5 ... etc., then go back and access the dictionary I wanted by the int value and then assign the dictionary to a variable so I knew which was bigger. But I have a big list and lists and variable assignments are resource intensive and this is taking a long time (I had only a little bit of that written and it was taking forever to run). So I was hoping someone knew a fast way to do this. I actually could list out every possible combination of assignmnets using the if/thens but it's just like 5 pages of if/thens and assignments and is hard to read and manage when I want to change it. You've probably gathered this, but I"m new at programming. thx

    Read the article

  • super() in Python 2.x without args

    - by Slava Vishnyakov
    Trying to convert super(B, self).method() into a simple nice bubble() call. Did it, see below! Is it possible to get reference to class B in this example? class A(object): pass class B(A): def test(self): test2() class C(B): pass import inspect def test2(): frame = inspect.currentframe().f_back cls = frame.[?something here?] # cls here should == B (class) c = C() c.test() Basically, C is child of B, B is child of A. Then we create c of type C. Then the call to c.test() actually calls B.test() (via inheritance), which calls to test2(). test2() can get the parent frame frame; code reference to method via frame.f_code; self via frame.f_locals['self']; but type(frame.f_locals['self']) is C (of course), but not B, where method is defined. Any way to get B?

    Read the article

  • Creating Thread's in python

    - by chrissygormley
    Hello, I have a script and I want one function to run at the same time as the other. Example code I have looked at: import threading def MyThread ( threading.thread ): doing something........ def MyThread2 ( threading.thread ): doing something........ MyThread().start() MyThread2().start() I am having trouble getting this working. I would prefer to get this going using a threaded function rather than a class. Thanks for any help.

    Read the article

  • How to add columns to sqlite3 python?

    - by user291071
    I know this is simple but I can't get it working! I have no probs with insert,update or select commands, Lets say I have a dictionary and I want to populate a table with the column names in the dictionary what is wrong with my one line where I add a column? ##create con = sqlite3.connect('linksauthor.db') c = con.cursor() c.execute('''create table linksauthor (links text)''') con.commit() c.close() ##populate author columns allauthors={'joe':1,'bla':2,'mo':3} con = sqlite3.connect('linksauthor.db') c = con.cursor() for author in allauthors: print author print type(author) c.execute("alter table linksauthor add column '%s' 'float'")%author ##what is wrong here? con.commit() c.close()

    Read the article

  • Python sorting problem

    - by matt
    I'm sure this is simple but I can't figure it out. I have a list of strings like this(after using sorted on it): Season 2, Episode 1: A Flight to Remember Season 2, Episode 20: Anthology of Interest I Season 2, Episode 2: Mars University Season 2, Episode 3: When Aliens Attack .... Season 3, Episode 10: The Luck of the Fryrish Season 3, Episode 11: The Cyber House Rules Season 3, Episode 12: Insane in the Mainframe Season 3, Episode 1: The Honking Season 3, Episode 2: War Is the H-Word How can I make them sort out properly? (by episode #, ascending)

    Read the article

  • python / sets / dictionary / initialization

    - by Mario D
    Can someone explain help me understand how the this bit of code works? Particularly how the myHeap assignment works. I know the freq variable is assigned as a dictionary. But what about my myHeap? is it a Set? exe_Data = { 'e' : 0.124167, 't' : 0.0969225, 'a' : 0.0820011, 'i' : 0.0768052, } freq = exe_Data) myHeap = [[pct, [symbol, ""]] for symbol, pct in freq.items()]

    Read the article

  • python sending incomplete data over socket

    - by tipu
    I have this socket server script, import SocketServer import shelve import zlib class MyTCPHandler(SocketServer.BaseRequestHandler): def handle(self): self.words = shelve.open('/home/tipu/Dropbox/dev/workspace/search/words.db', 'r'); self.tweets = shelve.open('/home/tipu/Dropbox/dev/workspace/search/tweets.db', 'r'); param = self.request.recv(1024).strip() try: result = str(self.words[param]) except KeyError: result = "set()" self.request.send(str(result)) if __name__ == "__main__": HOST, PORT = "localhost", 50007 SocketServer.TCPServer.allow_reuse_address = True server = SocketServer.TCPServer((HOST, PORT), MyTCPHandler) server.serve_forever() And this receiver, from django.http import HttpResponse from django.template import Context, loader import shelve import zlib import socket def index(req, param = ''): HOST = 'localhost' PORT = 50007 s = socket.socket(socket.AF_INET, socket.SOCK_STREAM) s.connect((HOST, PORT)) s.send(param) data = zlib.decompress(s.recv(131072)) s.close() print 'Received', repr(data) t = loader.get_template('index.html') c = Context({ 'foo' : data }) return HttpResponse(t.render(c)) I am sending strings to the receiver that are in the hundreds of kilobytes. I end up only receiving a portion of it. Is there a way that I can fix that so that the whole string is sent?

    Read the article

facebook twitter digg google delicious technorati stumbleupon myspace wordpress linkedin gmail igoogle windows live tumblr viadeo yahoo buzz yahoo mail yahoo bookmarks favorites email print

< Previous Page | 158 159 160 161 162 163 164 165 166 167 168 169  | Next Page >