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  • hierarchical clustering on correlations in Python scipy/numpy?

    - by user248237
    How can I run hierarchical clustering on a correlation matrix in scipy/numpy? I have a matrix of 100 rows by 9 columns, and I'd like to hierarchically clustering by correlations of each entry across the 9 conditions. I'd like to use 1-pearson correlation as the distances for clustering. Assuming I have a numpy array "X" that contains the 100 x 9 matrix, how can I do this? I tried using hcluster, based on this example: Y=pdist(X, 'seuclidean') Z=linkage(Y, 'single') dendrogram(Z, color_threshold=0) however, pdist is not what I want since that's euclidean distance. Any ideas? thanks.

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  • How Can I up my Street Cred in the coding world

    - by RedEye
    I know this isn't directly related to a specific coding problem. It's a more general programming question. I'm a n00b... Been coding for 1 year, and it's where I belong. I want to get hardcore and put everything I have into it. I started with C++ and now I'm into C#. I love it all. What can I do to up my game and up my respect in the programming world?

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  • A simple explanation of Naive Bayes Classification

    - by Jaggerjack
    I am finding it hard to understand the process of Naive Bayes, and I was wondering if someone could explained it with a simple step by step process in English. I understand it takes comparisons by times occurred as a probability, but I have no idea how the training data is related to the actual dataset. Please give me an explanation of what role the training set plays. I am giving a very simple example for fruits here, like banana for example training set--- round-red round-orange oblong-yellow round-red dataset---- round-red round-orange round-red round-orange oblong-yellow round-red round-orange oblong-yellow oblong-yellow round-red

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  • What is the fastest, most efficient way to get up to speed on a new technology?

    - by SLC
    My current job involves working with a huge number of technologies, most of which are very niche and unheard of. In some cases I have to write something about the technology, or with the technology, such as some lessons, examples, or tutorials, on behalf of the developer of that technology or someone that is backing it. When I get told to learn about a new technology, my first port of call is to check our internal library, and then look on amazon for a book on the subject. Failing that, or if the project is too small to warrant a purchase, I hit up google and youtube. However the results of randomly googling what I want to learn are hit and miss. Some days, I can find everything I want to know in a series of lessons or videos, and it's no problem. Other times, I can find almost nothing, and I really have to piece together things from sites. The result is that there are various resources out there, videos, interactive lessons, tutorials, books etc. but when I need to learn something fast, I often don't know the best way to go about it. It's not about fun, because I don't always have the luxury of working my way through a 600 page textbook named "A Complete Guide To Technology X", I have to deliver results quickly. One of the examples I'd like to use is ASP.NET MVC 2 which is something I have been told to learn. I grabbed a book on MVC 1 to refresh my knowledge, but googling it does't produce much useful information. I've seen a ton of ScottGu's tutorials on it, but they are mostly feature presentations, and some date back almost a year. The same applies to channel 9 and there are no books out yet on amazon. My question therefore has two parts, the first asks, "Where are the best places to look to get the information needed to learn a new technology?" and the second asks "What is the most efficient way to use such resources to learn a new technology?"

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  • Strange behaviour with Microsoft.WindowsCE.Forms

    - by Mohammadreza
    I have a Windows Mobile application in which I want to check the device orientation. Therefore I wrote the following property in one of my forms: internal static Microsoft.WindowsCE.Forms.ScreenOrientation DeviceOriginalOrientation { get; private set; } The strange thing is that after that whenever I open a UserControl, the designer shows this warning even if that UserControl doesn't use the property: Could not load file or assembly 'Microsoft.WindowsCE.Forms, Version=3.5.0.0, Culture=neutral, PublicKeyToken=969db8053d3322ac' or one of its dependencies. The located assembly's manifest definition does not match the assembly reference. (Exception from HRESULT: 0x80131040) Commenting the above property will dismiss the warning and shows the user control again. The application is built successfully and runs without any problems in both cases. Does anybody know why this happens and how can I fix it?

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  • Mahout Naive Bayes Classifier for Items

    - by Nimesh Parikh
    Team, I am working on a project where i need to classify Items into certain category. I have a single file as input; which contains target variable and space separated features. My training data will look like Category Name [Tab] DataString Plumbing [Tab] Pipe Tap Plastic Pipe PVC Pipe Cold Water Line Hot Water Line Tee outlet up Elbow turned up Elbow turned down Gate valve Globe valve Paint [Tab] Ivory Black Burnt Umber Caput Mortuum Violet Earth Red Yellow Ochre Titanium White Cadmium Yellow Light Cadmium Yellow Deep Cloths [Tab] Shirt T-Shirt Pent Jeans Tee Cargo Well, I have really big set of Category. I have couple of question here am i using correct data for Training? If no then what should i use? Once I train and Test my model, what is next step? How can i use output? Please help me with this Thanks, Nimesh

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  • razor intellisense not working on VS2010 for microsoft.web.helpers

    - by pomarc
    I have VS2010 Premium,.NET4.0, MVC3 Tools Update. I've nugetted microsoft-web-helpers successfully. I cannot get @razor intellisense to recognize the microsoft.web.helpers classes. They do work correctely at runtime, i.e. @Twitter.profile shows a profile, but at design time the statent is seen as an error and no members are shown after "." I've tried to add <add assembly="System.Web.Helpers, Version=1.0.0.0, Culture=neutral, PublicKeyToken=31BF3856AD364E35" /> to the <assemblies> element in web.config, but it didn't help. Any idea? thanks.

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  • What should every programmer know?

    - by Matt Lacey
    Regardless of programming language(s) or operating system(s) used or the environment they develop for, what should every programmer know? Some background: I'm interested in becoming the best programmer I can. As part of this process I'm trying to understand what I don't know and would benefit me a lot if I did. While there are loads of lists around along the lines of "n things every [insert programming language] developer should know", I have yet to find anything similar which isn't limited to a specific language. I also expect this information to be of interest and benefit to others.

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  • How to figure out optimal C / Gamma parameters in libsvm?

    - by Cuga
    I'm using libsvm for multi-class classification of datasets with a large number of features/attributes (around 5,800 per each item). I'd like to choose better parameters for C and Gamma than the defaults I am currently using. I've already tried running easy.py, but for the datasets I'm using, the estimated time is near forever (ran easy.py at 20, 50, 100, and 200 data samples and got a super-linear regression which projected my necessary runtime to take years). Is there a way to more quickly arrive at better C and Gamma values than the defaults? I'm using the Java libraries, if that makes any difference.

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  • What do you do to keep current

    - by griegs
    I've noticed that as I progress in my career I my day to day activities require less and less actual hands on development. However, I feel that I need to stay current, both for my own personal desire as well as being able to guide a team to best practices etc. I'm finding it very hard to stay on top of the game because there are so many new frameworks, technologies and patterns coming out. Do I concentrate on a particular aspect or framework? Do I become a generalist or a specialist? What are others doing to maintain a certain level of proficiency and currentness (sic)?

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  • Prolog: Not executing code as expected.

    - by Louis
    Basically I am attempting to have an AI agent navigate a world based on given percepts. My issue is handling how the agent moves. Basically, I have created find_action/4 such that we pass in the percepts, action, current cell, and the direction the agent is facing. As it stands the entire code looks like: http://wesnoth.pastebin.com/kdNvzZ6Y My issue is mainly with lines 102 to 106. Basically, in it's current form the code does not work and the find_action is skipped even when the agent is in fact facing right (I have verified this). This broken code is as follows: % If we are headed right, take a left turn find_action([_, _, _, _, _], Action, _, right) :- retractall(facing(_)), assert(facing(up)), Action = turnleft . However, after some experimentation I have concluded that the following works: % If we are headed right, take a left turn find_action([_, _, _, _, _], Action, _, _) :- facing(right), retractall(facing(_)), assert(facing(up)), Action = turnleft . I am not entire sure why this is. I've attempted to create several identical find_action's as well, each checking a different direction using the facing(_) format, however swipl does not like this and throws an error. Any help would be greatly appreciated.

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  • What is your favorite pastime to engage in while your project is buidling?

    - by ondesertverge
    As my average project grows in size the sum of build times throughout the day (and night) adds up to a substantial amount of time. Some of the things I or others do in this time include: Reading the news Thinking of ways to advance the project Looking at other projects Throwing darts Checking the unanswered list on stackoverflow.com Build times aren't constant making it hard to plan constructive use of them. I would like to hear of a method in use to make beneficial use of those few minutes that can add up to a few hours.

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  • How to learn flex?

    - by Zenzen
    So I'm starting an internship as a Flex developer in ~2weeks thanks to a friend of mine. The thing is I know squat about Flex - it is an internship after all so I'm supposed to learn there, but nonetheless I want to have some basic understanding of Flex before I start (eventually I want to become a JEE/Flex dev). So my question is simple, which book(s) would you recommend me to start with? Are there any "must have" books, like let's say "Thinking in C++" for C++ etc.? I already heard about a few video tutorials and I will surely check them out but I'd also want to get some decent books.

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  • java web development, what skills do I need?

    - by mrblah
    I want to learn, at least at a basic level, how to build java web applications (coming from a .net background). Meaning, I would like to be able to build, deploy a simple cms type application from the ground up. What exactly do I need to learn? Tomcat seems to be a good web server for Java. What options are there for the web? I know there is hibernate for an ORM. Does java have MVC? what about JSP? can MVC and JSP be together? beans? Maybe a book that covers all of these?

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  • Experimental IDE concepts

    - by efbenson
    I am interesting and building a new style IDE for a side project. Mainly to do away with the normal notepad on steroids IDE. I am looking for some inspiration for things that have been tried or that you have seen (or not) that looked cool and would be useful to have in an IDE. Things that I can up with are: http://digitaltools.node3000.com/blog/1052-field-experimental-programming-suite http://www.cs.brown.edu/people/acb/codebubbles_site.htm

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  • What solution programmers prefer to get rid of Myopia?

    - by Emily
    Yes, i have Myopia and that's really annoying and make me blame myself why i've choosen this field. And i think a lot of people like me here who should stay a maximum of 12inches to see the laptop screen clearly :'( What did you choose/Or the best choice in order to correct your short-sight? Glasses Contacts Overnight Contacts Lasik I'm really confused because some people say glasses are decreasing the sight more, other say Lasik is just a luck, others prefer overnight contacts which you sleep with'em.

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  • Multiple levels of 'collection.defaultdict' in Python

    - by Morlock
    Thanks to some great folks on SO, I discovered the possibilities offered by collections.defaultdict, notably in readability and speed. I have put them to use with success. Now I would like to implement three levels of dictionaries, the two top ones being defaultdict and the lowest one being int. I don't find the appropriate way to do this. Here is my attempt: from collections import defaultdict d = defaultdict(defaultdict) a = [("key1", {"a1":22, "a2":33}), ("key2", {"a1":32, "a2":55}), ("key3", {"a1":43, "a2":44})] for i in a: d[i[0]] = i[1] Now this works, but the following, which is the desired behavior, doesn't: d["key4"]["a1"] + 1 I suspect that I should have declared somewhere that the second level defaultdict is of type int, but I didn't find where or how to do so. The reason I am using defaultdict in the first place is to avoid having to initialize the dictionary for each new key. Any more elegant suggestion? Thanks pythoneers!

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  • Classification: Dealing with Abstain/Rejected Class

    - by abner.ayala
    I am asking for your input and/help on a classification problem. If anyone have any references that I can read to help me solve my problem even better. I have a classification problem of four discrete and very well separated classes. However my input is continuous and has a high frequency (50Hz), since its a real-time problem. The circles represent the clusters of the classes, the blue line the decision boundary and Class 5 equals the (neutral/resting do nothing class). This class is the rejected class. However the problem is that when I move from one class to the other I activate a lot of false positives in the transition movements, since the movement is clearly non-linear. For example, every time I move from class 5 (neutral class) to 1 I first see a lot of 3's before getting to the 1 class. Ideally, I will want my decision boundary to look like the one in the picture below where the rejected class is Class =5. Has a higher decision boundary than the others classes to avoid misclassification during transition. I am currently implementing my algorithm in Matlab using naive bayes, kNN, and SVMs optimized algorithms using Matlab. Question: What is the best/common way to handle abstain/rejected classes classes? Should I use (fuzzy logic, loss function, should I include resting cluster in the training)?

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  • Are you a self taught programmer or did you take a programming course?

    - by workinprogress
    Lots of developers I know were self taught programmers including me. I was wondering how much of the developer community learned programming by taking a course in school or by experimenting, asking questions on forums, reading online articles, and just making it up as you go along? Post whether you were self taught or took classes, what language you program in, and anything else that may be interesting. P.S. Books count as self taught.

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  • NoSql Crash Course/Tutorial

    - by Chris Thompson
    Hi all, I've seen NoSQL pop up quite a bit on SO and I have a solid understanding of why you would use it (from here, Wikipedia, etc). This could be due to the lack of concrete and uniform definition of what it is (more of a paradigm than concrete implementation), but I'm struggling to wrap my head around how I would go about designing a system that would use it or how I would implement it in my system. I'm really stuck in a relational-db mindset thinking of things in terms of tables and joins... At any rate, does anybody know of a crash course/tutorial on a system that would use it (kind of a "hello world" for a NoSQL-based system) or a tutorial that takes an existing "Hello World" app based on SQL and converts it to NoSQL (not necessarily in code, but just a high-level explanation). I see this having one solid answer, but if you guys feel like it should be community wiki, I'll be happy to change it. Thanks! Chris

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