Search Results

Search found 7902 results on 317 pages for 'structure'.

Page 183/317 | < Previous Page | 179 180 181 182 183 184 185 186 187 188 189 190  | Next Page >

  • How can I save BioPerl sequence nested features in genbank or embl format?

    - by Ryan Thompson
    In BioPerl, a sequence object can have any number of features, and each of these can have subfeatures nested within them. For example, a feature may be a complete coding sequence of a gene, and its subfeatures might be individual exons that are concatenated to form the full coding sequence. However, when I use BioPerl to write a sequence object to a file in genbank or embl format, only the top-level features are written to the file, not the sub-features nested within the top-level features. How can I store my subfeatures in sequence files? Should I just convert all my subfeatures into top-level features, and then reconstruct the tree structure next time I read in the sequence?

    Read the article

  • CakePHP Bake association problem

    - by Apu
    I have only two tables in my database with a one-to-many relationship between them (user hasMany messages) and am trying to get basic CRUD functionality going. Bake detects the associations correctly and specifies them correctly inside the model classes, but in controllers and views it looks like Cake doesn't know anything about those associations -- I don't even get a select tag for user_id when I go add a new message. Has anyone come across this problem before? What can I be doing wrong? Table structure appears to be fine: CREATE TABLE users ( id int(11) NOT NULL AUTO_INCREMENT, username varchar(255) NOT NULL, `password` varchar(255) NOT NULL, email varchar(255) NOT NULL, created datetime NOT NULL, modified datetime NOT NULL, PRIMARY KEY (id) ) ENGINE=MyISAM DEFAULT CHARSET=utf8; CREATE TABLE IF NOT EXISTS `messages` ( `id` int(11) NOT NULL AUTO_INCREMENT, `user_id` int(11) NOT NULL, `content` varchar(255) NOT NULL, `created` datetime NOT NULL, `modified` datetime NOT NULL, PRIMARY KEY (`id`) ) ENGINE=MyISAM DEFAULT CHARSET=utf8 AUTO_INCREMENT=1 ;

    Read the article

  • Problem measuring N times the execution time of a code block

    - by Nazgulled
    EDIT: I just found my problem after writing this long post explaining every little detail... If someone can give me a good answer on what I'm doing wrong and how can I get the execution time in seconds (using a float with 5 decimal places or so), I'll mark that as accepted. Hint: The problem was on how I interpreted the clock_getttime() man page. Hi, Let's say I have a function named myOperation that I need to measure the execution time of. To measure it, I'm using clock_gettime() as it was recommend here in one of the comments. My teacher recommends us to measure it N times so we can get an average, standard deviation and median for the final report. He also recommends us to execute myOperation M times instead of just one. If myOperation is a very fast operation, measuring it M times allow us to get a sense of the "real time" it takes; cause the clock being used might not have the required precision to measure such operation. So, execution myOperation only one time or M times really depends if the operation itself takes long enough for the clock precision we are using. I'm having trouble dealing with that M times execution. Increasing M decreases (a lot) the final average value. Which doesn't make sense to me. It's like this, on average you take 3 to 5 seconds to travel from point A to B. But then you go from A to B and back to A 5 times (which makes it 10 times, cause A to B is the same as B to A) and you measure that. Than you divide by 10, the average you get is supposed to be the same average you take traveling from point A to B, which is 3 to 5 seconds. This is what I want my code to do, but it's not working. If I keep increasing the number of times I go from A to B and back A, the average will be lower and lower each time, it makes no sense to me. Enough theory, here's my code: #include <stdio.h> #include <time.h> #define MEASUREMENTS 1 #define OPERATIONS 1 typedef struct timespec TimeClock; TimeClock diffTimeClock(TimeClock start, TimeClock end) { TimeClock aux; if((end.tv_nsec - start.tv_nsec) < 0) { aux.tv_sec = end.tv_sec - start.tv_sec - 1; aux.tv_nsec = 1E9 + end.tv_nsec - start.tv_nsec; } else { aux.tv_sec = end.tv_sec - start.tv_sec; aux.tv_nsec = end.tv_nsec - start.tv_nsec; } return aux; } int main(void) { TimeClock sTime, eTime, dTime; int i, j; for(i = 0; i < MEASUREMENTS; i++) { printf(" » MEASURE %02d\n", i+1); clock_gettime(CLOCK_REALTIME, &sTime); for(j = 0; j < OPERATIONS; j++) { myOperation(); } clock_gettime(CLOCK_REALTIME, &eTime); dTime = diffTimeClock(sTime, eTime); printf(" - NSEC (TOTAL): %ld\n", dTime.tv_nsec); printf(" - NSEC (OP): %ld\n\n", dTime.tv_nsec / OPERATIONS); } return 0; } Notes: The above diffTimeClock function is from this blog post. I replaced my real operation with myOperation() because it doesn't make any sense to post my real functions as I would have to post long blocks of code, you can easily code a myOperation() with whatever you like to compile the code if you wish. As you can see, OPERATIONS = 1 and the results are: » MEASURE 01 - NSEC (TOTAL): 27456580 - NSEC (OP): 27456580 For OPERATIONS = 100 the results are: » MEASURE 01 - NSEC (TOTAL): 218929736 - NSEC (OP): 2189297 For OPERATIONS = 1000 the results are: » MEASURE 01 - NSEC (TOTAL): 862834890 - NSEC (OP): 862834 For OPERATIONS = 10000 the results are: » MEASURE 01 - NSEC (TOTAL): 574133641 - NSEC (OP): 57413 Now, I'm not a math wiz, far from it actually, but this doesn't make any sense to me whatsoever. I've already talked about this with a friend that's on this project with me and he also can't understand the differences. I don't understand why the value is getting lower and lower when I increase OPERATIONS. The operation itself should take the same time (on average of course, not the exact same time), no matter how many times I execute it. You could tell me that that actually depends on the operation itself, the data being read and that some data could already be in the cache and bla bla, but I don't think that's the problem. In my case, myOperation is reading 5000 lines of text from an CSV file, separating the values by ; and inserting those values into a data structure. For each iteration, I'm destroying the data structure and initializing it again. Now that I think of it, I also that think that there's a problem measuring time with clock_gettime(), maybe I'm not using it right. I mean, look at the last example, where OPERATIONS = 10000. The total time it took was 574133641ns, which would be roughly 0,5s; that's impossible, it took a couple of minutes as I couldn't stand looking at the screen waiting and went to eat something.

    Read the article

  • In search of opinions on web based version control systems

    - by tom smith
    Hi. Researching various open source, web-based document management/version control systems. I've checked google/questions here, etc... I'm looking for a lightweight web-based (apache) document mgmt/version control app that runs on top of SVN. I need to have the ability to: have multiple users checkin/checkout have a workflow (when userA checks the file in, and finishes the app passes it to the next person, etc... the app needs to allow me to have a structure where the files can be moved as a group. the files will be changed on a monthly basis app needs to have a access/premission control system. some people can see certain files, and perform certain actions on the files I imagine that I'm going to have 40-50 people dealing with the different files. I imagine that I'm going to have 2000-3000 files that have to be massaged. I'd prefer that the app be php based if possible, as opposed to a straight java app. Thanks

    Read the article

  • Subversion for version control

    - by Gabriel Parenza
    Hi, I am working on an application whose primary purpose would be to provide source control management. My idea is to use to SVNKit for file check-out and check-in. However, while working with SVNKit, I realised it does not have the speed I was looking for. For instance, whenever developers create a ChangeRequest, which can encompass change in 3-40 files, I have to create a directory structure distributed across 32 folders. Doing so takes around 50 seconds, Another instance is that after creating change request developers can add files to the request. Copying even a single file from Trunk to branch takes around 6-7 secs. My question is has anyone had experience like this and what did you do to improve the performance? Moreover, is my approach correct? NOTE: I am using "http" protocol and can't use "svn" protocol.

    Read the article

  • Weird behaviour of a deserialized class

    - by orloffm
    I've got a huge XML file that's being deserialized by XmlSerializer in an XSD-generated class structure. Everything used to work just fine, but now a weird thing started happening. Sometimes (50% of runs) a field of a certain object of a class that's deep in the class tree just changes to a certain value of the same field of a different object of the same class. It happens when entering some function, when debugger steps from opening "{" to the first line of code. I understand that it's stupid question, but maybe someone have any thoughts?

    Read the article

  • Generating unobtrusive JS

    - by nico
    I have read quite a bit about unobtrusive JS and how to generate it and all that jazz... My problem is this: I have a website that heavily relies on mod_rewrite, so essentially all the pages requests are sent to index.php that generates the main structure of the page and then includes the appropriate page. Now, there are different sections in the site and each section uses different Javascript functions (e.g. for different AJAX requests). Now, if I just were to attach a function to the onload of the page obviously the thing would not work, as I do not have to initialise the same things for each page... so what is the best way to handle this situation? I hope the situation is clear, I'll be happy to clarify if needed

    Read the article

  • How to select all parents of a node in a hierarchical mysql table?

    - by Ehsan Khodarahmi
    I have a MySQL table that represents data for a tree GUI component, here's the structure of my table: treeTable ( id INT NOT NULL PRIMARY KEY, parentId INT, name VARCHAR(255) ); parentId is a self-referencing foreign key. Now I want to write a stored procedure which gets a node id and returns a result set that contains that node and all of its parents. For example, suppose that my table has filled with this data: 1, null, 'root' 2, 1 , 'level_1' 3, 2 , 'level_2' Now I want to get all parent nodes of node 3 (nodes 1 and 2) and return a result set that contains all tree records. Can anybody help me please?

    Read the article

  • Software Requirement Specifications for Web Applications

    - by illuminatedtiger
    Hi guys, I'm looking for some guidance/books to read when it comes to creating a software requirement specification for a web application. For inspiration I have read some spec documents for desktop based applications. The documents I have read capture a systems functional requirements in use cases which tend to be rather data oriented with use cases centered around the various CRUD operations the application is intended to perform. I like this structure however I'm finding it rather difficult to marry it to what my web application needs to do, mostly reading data as opposed to manipulating it. I've had a go at writing some use cases however they all tend to boil down to "Search for item", "Change view of search results" or "User selects facet to refine search results". This doesn't sound quite right to me and makes me wonder if I'm going about this the right way. Are there planning differences between web based and desktop based applications?

    Read the article

  • Eclipse antRunner command line build has wrong dependency build order

    - by Sam Jones
    My team's Eclipse RCP app builds fine from the Eclipse IDE. When I try to build it from the command line, using the antRunner application, it builds the plugins out of order -- a plugin builds before it's dependencies are built, and so can't resolve some of the needed classes. Where should I look to fix this? As far as I can tell, the dependencies are set up correctly (a feature that depends on a plugin that depends on another plugin). I have my build.properties and folder structure set up as specified here. Is there anything else I should look at?

    Read the article

  • getting detailed information about structured exceptions

    - by Martin
    My Visual C++ application is compiled with /EHA option, letting me catch structured exceptions (division by zero, access violation, etc). I then translate those exceptions to my own exception class using _set_se_translator(). My goal is to improve our logging of those types of exceptions. I can get the type of exception from the EXCEPTION_RECORD structure, and the exception address. I would like to be able to gather more information, like the source file/location where the exception is thrown, the call stack, etc. Is that possible? I do create an exception minidump on structured exceptions - is there a tool to automatically get the call stack from that?

    Read the article

  • How to insert all records into a table only one time

    - by Lu Lu
    Hello, I want to get all records from a table1 & insert them into table2. Table1 & table2 are in different databases, table1 and table2 are same structure. Normally, I will get all records from table1, and for each record (foreach), I will insert it into table2 by using "INSERT ...". I want to know a effect way to insert all records into table only one time without foreach. I use C#, .NET 2.0 & WinForm. Thanks.

    Read the article

  • how to send JSON data with server error response code 500

    - by kapil.israni
    I wanted to know if theres a way to send a JSON data along with HTTP response code 500. Basically I want my rest client to know that there is some error on the backend and along with it send a JSON error data structure like this. {"error" : [ {"code": "1001", "desc": "Some error description"}, {"code": "1002", "desc": "Some other error description"} ] } This is using the following java stack = Java 6/JAX-RS/Jersey/Tomcat If not, then is there a way to send a custom response code along with JSON data. Basically looking from JAX-RS API it looks that you can only send JSON data along with 200 OK?? Any thoughts?? I am guessing RESTEasy would be the same, right??

    Read the article

  • Extending configuration for .Net 3.5 Applications

    - by Maximiliano Rios
    Due to a requirement in my current project, I have to build a configuration manager to handle configurations that merge local config info with database one. Custom configuration doesn't fit my needs, problem is that I don't know what's the type before loading certain information, for example: Loading database information I will able to know what's myhandler's type. Not previously. So I thought to write my own handler but I can't let set blank as type for sections, in fact .net requires to know what's the type to match myhandler nodes. I'm thinking on building a different parser to read XML nodes but I would prefer to match this structure. I've not found any information to do that yet, is there any way? Can I extend or hook up something into the framework to be capable of loading on-the-fly types and validate nodes? Thanks in advance.

    Read the article

  • What do the square brackets in LaTeX logs mean?

    - by stefan-majewsky
    I'm currently working on a parser that reads complete LaTeX logs. Most of the log format is, though weird, easy to figure out, but these square brackets are puzzling me. Here's an example from near the end of one of my logs: Overfull \hbox (10.88788pt too wide) in paragraph at lines 40--40 []$[]$ [] [102]) [103] Kapitel 14. (./Thermo-141-GrenzenFundamentalpostulat.tex [104 ]) (./Thermo-142-Mastergleichung.tex [105]) (./Thermo-143-HTheorem.tex [106pdfTeX warning (ext4): destination with the same identifier (name{equation.14.3.3}) ha s been already used, duplicate ignored Can anybody give me a hint what these square brackets mean? I can't see any structure in them. I have the suspicion that lines 2/3 above are some kind of ASCII art representing the box layout, though I know too less about badboxes to justify this or identify the meaning of the single characters. Then, the "[104" etc. seem to correspond to the page numbers, but I am still not seeing the reason why there is sometimes something inbetween the square brackets (like the pdfTeX warning above), and sometimes not.

    Read the article

  • Grails and googleJsonAPIService

    - by Calahad
    I am using the googleJsonAPIService to manipulate users (CRUD). This is how I get the Directory instance: def getBuilder() { def builder def httpTransport = googleJsonAPIService.makeTransport() def jsonFactory = googleJsonAPIService.makeJsonFactory() def requestInitialiser = googleJsonAPIService.getRequestInitialiser() builder = new Directory.Builder(httpTransport, jsonFactory, requestInitialiser); return builder } Directory getGoogleService() { Directory googleService = getBuilder().build() return googleService; } Once I have this service, I use it to get a user's details (in my own service) for example: def query = getGoogleService().users().get(id) return handleException { query.execute() } I manually populate a DTO with the result of that query, and this is where my question comes: Is there an elegant way to have this mapping (object returned to DTO) done automatically so all I have to do is pass the class of the object to be returned? This is the structure of the object returned by google : ["agreedToTerms":true,"changePasswordAtNextLogin":false, "creationTime":"2013-11-04T04:33:35.000Z", "emails":[{"address":"[email protected]","primary":true}],...]

    Read the article

  • How do I delete a file from depot, but leave local copy in tact?

    - by Gary
    I'm trying to learn Perforce and want to delete a file from the depot(easy to do with p4 delete, p4 submit), but that deletes it from the client machine dir structure as well. I want to keep my local file in my directory intact. The only way I can see to do this would be to move it out of the hierarchy that is under Perforce control before deleting. I was able to get my file back by syncing an earlier version. Maybe I set up my client workspace wrong? Or am I misunderstanding a fundamental concept of source control? The client workspace is /home/user and I did it this way so I could add any file under my home directory without getting an error about the file not being under client's root. FYI - Linux client and server running P4D/LINUX26X86/2009.1/222893 (2009/11/12) Any advice appreciated. Thanks.

    Read the article

  • Adding value to an Input field on click

    - by Wazdesign
    I have this structure on form, <input type="test" value="" id="username" /> <span class="input-value">John Smith</span> <a href="#" class="fill-input">Fill Input</a> when user click on the Fill Input , the data from span which has class input-value will be added to value, after clicking a tag the code should be look like this, <input type="test" value="john Smith" id="username" /> <span class="input-value">John Smith</span> <a href="#" class="fill-input">Fill Input</a> there are many forms element/input on the single page.

    Read the article

  • Maven2: Best practise for Enterprise Project (EAR file)

    - by Maik
    Hello everyone, I am just switching from Ant to Maven and am trying to figure out the best practice to set up a EAR file based Enterprise project? Lets say I want to create a pretty standard project with a jar file for the EJBs, a WAR file for the Web tier and the encapsulating EAR file, with the corresponding deployment descriptors. How would I go about it? Create the project with archetypeArtifactId=maven-archetype-webapp liek a war file and extend from there? What is the best project structure (and POM file example) for this? Where do you stick the ear file related deployment descriptors, etc? Thanks for any help.

    Read the article

  • Resources for how to design graph/charts well

    - by wesgarrison
    One of my projects needs to show users where they rank in certain calculations. I inherited the graph structure from the previous programmer and had to leave it alone while I worked on other parts of the site. It's time to make the graphs more meaningful, so I'm looking for books/websites/etc about graphs. (Not graph theory!) Charts that convey comparisons at a glance. Everyone suggests The Visual Display of Quantitative Information by Edward Tufte and that's spot on for what I'm looking for, so anything related to that would be great. Naturally, personal experience about what to do or not would be helpful as well.

    Read the article

  • Use a folder of xml files as data source for nhibernate

    - by Bart Van Eyndhoven
    I'm going to start writing NUnit tests for a few classes in my project. A certain number of these classes use data gathered through nhibernate from a sql server 2008 database. The part of the program I'm about to test is very specific (and complicated). Therefore I have made a folder of xml files. Combined, the xml files could result in the database structure. I mean each xml file corresponds to a table in the database. The data in the xml files is also consistent with the database. Is there a way to use this folder of xml files as data source for nhibernate? I mean: can I use nhibernate to gather my test data (wich I have specifically chosen) instead of data from the database? In this way, I could usefully test this component without corrrupting the (test) database for future tests.

    Read the article

  • SPARQL UNION - Result set incomplete

    - by jplevac
    I have two queries: query 1: SELECT DISTINCT ?o COUNT(?o) WHERE { ?s1 ?somep1 <predicate_one-uri>. ?s1 ?p ?o} query 2: SELECT DISTINCT ?o COUNT(?o) WHERE {?s2 ?somep2 <predicate_two-uri>.?s2 ?p ?o.} Each query gives me a different result set (as expected). I need to make a union of these two sets, from what I understand the query below should give me the set I want: SELECT DISTINCT ?o COUNT(?o) WHERE { { ?s1 ?somep1 <predicate_one-uri>.?s1 ?p1 ?o} UNION {?s2 ?somep2 <predicate_two-uri>.?s2 ?p2 ?o.} } The problem is that some results from query 1 are not in the union set and vice-versa for query 2. The union is not working properly as it does not incorporate all results of query 1 and query 2. Please advise on the proper structure of the sparql query for achieving the desired result set. Thanks in advance! JP Levac

    Read the article

  • Django loaddata throws ValidationError: [u'Enter a valid date in YYYY-MM-DD format.'] on null=true f

    - by datakid
    When I run: django-admin.py loaddata ../data/library_authors.json the error is: ... ValidationError: [u'Enter a valid date in YYYY-MM-DD format.'] The model: class Writer(models.Model): first = models.CharField(u'First Name', max_length=30) other = models.CharField(u'Other Names', max_length=30, blank=True) last = models.CharField(u'Last Name', max_length=30) dob = models.DateField(u'Date of Birth', blank=True, null=True) class Meta: abstract = True ordering = ['last'] unique_together = ("first", "last") class Author(Writer): language = models.CharField(max_length=20, choices=LANGUAGES, blank=True) class Meta: verbose_name = 'Author' verbose_name_plural = 'Authors' Note that the dob DateField has blank=True, null=True The json file has structure: [ { "pk": 1, "model": "books.author", "fields": { "dob": "", "other": "", "last": "Carey", "language": "", "first": "Peter" } }, { "pk": 3, "model": "books.author", "fields": { "dob": "", "other": "", "last": "Brown", "language": "", "first": "Carter" } } ] The backing mysql database has the relevent date field in the relevant table set to NULL as default and Null? = YES. Any ideas on what I'm doing wrong or how I can get loaddata to accept null date values?

    Read the article

  • gwt compiling error

    - by Hoax
    Compiling module com.sem.Sem10 Finding entry point classes [ERROR] Unable to find type 'com.sem.client.Sem10' [ERROR] Hint: Previous compiler errors may have made this type unavailable [ERROR] Hint: Check the inheritance chain from your module; it may not be inheriting a required module or a module may not be adding its source path entries properly My package structure is com.sem com.sem.client com.sem.schema com.sem.server inherits name='com.google.gwt.user.User' inherits name='com.google.gwt.user.theme.standard.Standard' inherits name='com.google.gwt.maps.GoogleMaps' script src="http://maps.google.com/maps?gwt=1&file=api&amp.... entry-point class='com.sem.client.Sem10' source path='com.sem.schema' I have googled this thing for quite a while and could not find a solution...? any help appreciated

    Read the article

  • How can I put rows of MySQL data under the appropriate titles using PHP?

    - by sfarbota
    I have the following MySQL table structure: num field company phone website 1 Gas abcd 123456789 abcd.com 2 Water efgh 987654321 efgh.com 3 Water ijkl 321654987 ijkl.com 4 Heat mnop 987654321 mnop.com 5 Gas qrst 123789654 qrst.com ... Is it possible with PHP (maybe using some mixture of GROUP_BY and ORDER_BY) to echo the data to the screen in the following format: Gas: abcd qrst 123456789 123789654 abcd.com qrst.com Water: efgh ijkl 987654321 321654987 efgh.com ijkl.com Heat: mnop 321654987 mnop.com The exact format of it isn't important. I just need for the different rows of data to be listed under the appropriate field with none of the fields repeated. I've been trying to figure this out for a while now, but I'm new to PHP and I can't seem to figure out how to do this, if it's even possible, or if there's a better way to organize my data to make it easier.

    Read the article

< Previous Page | 179 180 181 182 183 184 185 186 187 188 189 190  | Next Page >