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  • Perl syntax error [closed]

    - by Linny
    I am a beginner taking a Perl programming course. We are trying to write a basic program for counting nucleotides in a DNA string. I'm getting syntax errors on the lines that have a single bracket on lines 28 & 70 and don't know why. It also reads that I have compilation errors. I have no idea where to start figuring that out. # The purpose of this program is to count the number of nucleotides in a strand. Each protein is counted separately # print "/n NOTE: Nucleotide counting /n"; # use strict; # enforce variable declarations use warnings; # enable compiler warnings # Display number of A,a,T,t,G,g,C,c, nucleotides in a word or sequence of letters. # my ($base) = ''; # an extracted letter from a string my ($nuceotide_count) = 0 ; # the current position within the word my ($position) = 0 ; # number of vowels in user-supplied word my ($word) = ''; # word to be processed my ($A_count) = 0 ; # of A nucleotides in the user-supplied sequence my ($a_count) = 0 ; # of A nucleotides in the user-supplied sequence my ($C_count) = 0 ; # of C nucleotides in the user-supplied sequence my ($c_count) = 0 ; # of C nucleotides in the user-supplied sequence my ($G_count) = 0 ; # of G nucleotides in the user-supplied sequence my ($g_count) = 0 ; # of G nucleotides in the user-supplied sequence my ($T_count) = 0 ; # of T nucleotides in the user-supplied sequence my ($t_count) = 0 ; # of T nucleotides in the user-supplied sequence word = (STDIN) for ($position = 0);($position if (($base eq 'a') or ($base eq 'A')) { ++$A_count; } # end if ++$position; if (($base eq 'T') or ($base eq 't')) { ++$T_count; } end if ++$position; if (($base eq 'G') or ($base eq 'g')) { ++$G_count; } # end if ++$position; if (($base eq 'C') or ($base eq 'c')) { ++$C_count; } # end if ++$position; } # end for # Display final results. # print " \n The number of A or a neucleotides is: $A_count"; print " \n The number of T or t neucleotides is: $T_count"; print " \n The number of G or g neucleotides is: $G_count"; print " \n The number of C or c neucleotides is: $C_count"; print " \n\n Program completed successfully. \n" ; exit ;

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  • Switch from encrypted partition to unencrypted (Error: cryptsetup: evms_activate is not available)

    - by Chris Lercher
    I initially installed Ubuntu 11.04 with an encrypted file system (from the alternate install CD: Guided Partitioning, LVM encrypted). Now I wanted to change this setup to have my root file system on an unencrypted partition. I had the following setup before: /dev/mapper/my-root on / type ext4 (rw,noatime,errors=remount-ro,commit=0,commit=0) /dev/sda1 on /boot type ext2 (rw,noatime) I backed up /, reformatted /dev/sda5 (which had contained the encrypted LVM device) to an ext3 partition, and restored / to that partition. I edited /etc/fstab, removed the line /dev/mapper/my-root / ..., and added the line: /dev/sda5 / ext3 noatime,rw,errors=remount-ro,commit=0 0 1 I edited /etc/crypttab, and commented out the single entry. On reboot, I get the grub screen as usual, but then I get the message cryptsetup:evms_activate is not available, waiting for encrypted source device. I tried reinstalling Grub2 using a LiveCD with the ChRoot method, but that didn't make any difference. Why is Ubuntu still searching for an encrypted device?

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  • Error in my Separating Axis Theorem collision code

    - by Holly
    The only collision experience i've had was with simple rectangles, i wanted to find something that would allow me to define polygonal areas for collision and have been trying to make sense of SAT using these two links Though i'm a bit iffy with the math for the most part i feel like i understand the theory! Except my implementation somewhere down the line must be off as: (excuse the hideous font) As mentioned above i have defined a CollisionPolygon class where most of my theory is implemented and then have a helper class called Vect which was meant to be for Vectors but has also been used to contain a vertex given that both just have two float values. I've tried stepping through the function and inspecting the values to solve things but given so many axes and vectors and new math to work out as i go i'm struggling to find the erroneous calculation(s) and would really appreciate any help. Apologies if this is not suitable as a question! CollisionPolygon.java: package biz.hireholly.gameplay; import android.graphics.Canvas; import android.graphics.Color; import android.graphics.Paint; import biz.hireholly.gameplay.Types.Vect; public class CollisionPolygon { Paint paint; private Vect[] vertices; private Vect[] separationAxes; int x; int y; CollisionPolygon(Vect[] vertices){ this.vertices = vertices; //compute edges and separations axes separationAxes = new Vect[vertices.length]; for (int i = 0; i < vertices.length; i++) { // get the current vertex Vect p1 = vertices[i]; // get the next vertex Vect p2 = vertices[i + 1 == vertices.length ? 0 : i + 1]; // subtract the two to get the edge vector Vect edge = p1.subtract(p2); // get either perpendicular vector Vect normal = edge.perp(); // the perp method is just (x, y) => (-y, x) or (y, -x) separationAxes[i] = normal; } paint = new Paint(); paint.setColor(Color.RED); } public void draw(Canvas c, int xPos, int yPos){ for (int i = 0; i < vertices.length; i++) { Vect v1 = vertices[i]; Vect v2 = vertices[i + 1 == vertices.length ? 0 : i + 1]; c.drawLine( xPos + v1.x, yPos + v1.y, xPos + v2.x, yPos + v2.y, paint); } } public void update(int xPos, int yPos){ x = xPos; y = yPos; } /* consider changing to a static function */ public boolean intersects(CollisionPolygon p){ // loop over this polygons separation exes for (Vect axis : separationAxes) { // project both shapes onto the axis Vect p1 = this.minMaxProjection(axis); Vect p2 = p.minMaxProjection(axis); // do the projections overlap? if (!p1.overlap(p2)) { // then we can guarantee that the shapes do not overlap return false; } } // loop over the other polygons separation axes Vect[] sepAxesOther = p.getSeparationAxes(); for (Vect axis : sepAxesOther) { // project both shapes onto the axis Vect p1 = this.minMaxProjection(axis); Vect p2 = p.minMaxProjection(axis); // do the projections overlap? if (!p1.overlap(p2)) { // then we can guarantee that the shapes do not overlap return false; } } // if we get here then we know that every axis had overlap on it // so we can guarantee an intersection return true; } /* Note projections wont actually be acurate if the axes aren't normalised * but that's not necessary since we just need a boolean return from our * intersects not a Minimum Translation Vector. */ private Vect minMaxProjection(Vect axis) { float min = axis.dot(new Vect(vertices[0].x+x, vertices[0].y+y)); float max = min; for (int i = 1; i < vertices.length; i++) { float p = axis.dot(new Vect(vertices[i].x+x, vertices[i].y+y)); if (p < min) { min = p; } else if (p > max) { max = p; } } Vect minMaxProj = new Vect(min, max); return minMaxProj; } public Vect[] getSeparationAxes() { return separationAxes; } public Vect[] getVertices() { return vertices; } } Vect.java: package biz.hireholly.gameplay.Types; /* NOTE: Can also be used to hold vertices! Projections, coordinates ect */ public class Vect{ public float x; public float y; public Vect(float x, float y){ this.x = x; this.y = y; } public Vect perp() { return new Vect(-y, x); } public Vect subtract(Vect other) { return new Vect(x - other.x, y - other.y); } public boolean overlap(Vect other) { if(y > other.x && other.y > x){ return true; } return false; } /* used specifically for my SAT implementation which i'm figuring out as i go, * references for later.. * http://www.gamedev.net/page/resources/_/technical/game-programming/2d-rotated-rectangle-collision-r2604 * http://www.codezealot.org/archives/55 */ public float scalarDotProjection(Vect other) { //multiplier = dot product / length^2 float multiplier = dot(other) / (x*x + y*y); //to get the x/y of the projection vector multiply by x/y of axis float projX = multiplier * x; float projY = multiplier * y; //we want to return the dot product of the projection, it's meaningless but useful in our SAT case return dot(new Vect(projX,projY)); } public float dot(Vect other){ return (other.x*x + other.y*y); } }

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  • 3 monitors, 2 X screens, Twinview not working as expected

    - by mononym
    Hi Guys, I have 3 monitors on 2 graphics cards (both nvidia) to get all 3 working i set 2 as twinview and one to have its own x screen. but when i do this, the twinview screens (which previously worked like 2 seperate screens) now work as one, ie a maximised window is across both screens How can i get the twinview to work as 2 seperate screens again?

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  • Ubuntu Server won't boot with "zip2: Compressed file ends unexpectedly" error

    - by Oetzi
    I am trying to boot lucid server on my new VPS but its giving me some problems. The boot gets to a point where it hangs. At this point it says: No such file `modules-2.6.31-20-server-amd64.tar.bz2' zip2: Compressed file ends unexpectedly You can use the `bzip2recover' program to attempt to recover data from undamaged sections of corrupted files. tar: Child returned status 2 tar: Exiting with failure status due to previous errors Module installation failed. Does anyone have any ideas how I might be able to fix this? Sorry that this is rather vague!

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  • Install grub on 2nd hard drive

    - by jldupont
    I have 2 HDs in my machine: Drive 1 with grub and my Windows XP OS Drive 2 with only Ubuntu 9.04 I would like to be able to boot directly from drive 2. I am missing grub on drive 2... how do I add it? EDIT: I ended up reinstalling the whole OS.

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  • Why is my second monitor not working?

    - by StampedeXV
    Since I have my new computer, I have a very weird problem. Facts: New Computer: Motherboard: ASRock Z77 Pro 3 Graphics-card: Asus1GB D5 X EN GTX560 DCII OC/2DI R CPU: Intel i5-3570 Windows 7 64bit 500W beQuiet special edition (92% efficiency) 8GB 1333MHz DDR3 Corsair RAM (CL9) Scythe Mugen 2 2 magnetic HDDs + 1 SDD 1 DVD-R Old Computer: Motherboard: Asus P55 something Graphics-card: Asus1GB D5 X EN GTX560 DCII OC/2DI R CPU: Intel i7-870 Windows 7 64bit 550W Corsair 8GB 1333MHz DDR3 Corsair RAM (CL9) Scythe Mugen 3 2 magnetic HDDs + 1 SDD 1 DVD-R On the old computer it worked fine with two monitors. Moving to the new (I took the same Graphics-card) it only works with one. The weird thing I mentioned is: not matter which one. But if I put both there, only one is available. There is no reaction at the start (where normally (at least if I remember correctly) the monitor shortly went from "standby" to "on"). Windows does not recognize a second monitor in the Device Manager. I have the latest drivers for Motherboard and Graphics-card. I have the latest BIOS drivers. I am out of ideas. Edit: completed computer setup

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  • Initramfs error during boot

    - by PoohJuice
    Boot from (hd0,0) ext3 238ac8ca-9576-443d-8e23-8dd836cd2683 Starting up ... mount: mounting /dev/disk/by-uuid/238ac8ca-9576-443d-8e23-8dd836cd2683 on /root failed: Invalid argument mount: mounting /dev on /root/dev failed: No such file or directory mount: mounting /sys on /root/sys failed: No such file or directory mount: mounting /proc on /root/proc failed: No such file or directory Target filesystem doesn't have requested /sbin/init. No init found. Try passing init= bootarg. BusyBox v1.15.3 (Ubuntu 1:1.15.3-1ubuntu5) built in shell (ash) Enter 'help' for a list of built-in commands.

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  • Error when running adprep32 /rodcprep, trying to add a 2008 domain controller to a 2003 domain

    - by virtuist
    I'm trying to migrate a Small Business Server 2003 to Server 2008 domain. The problem is when I run the adprep32 /rodcprep command as specified as the final step in Step 3 of this article: http://www.experts-exchange.com/Software/Server_Software/Email_Servers/Exchange/A_2881-Migrate-Small-Business-Server-2003-to-Exchange-2010-and-Windows-2008-R2.html I get an error "Adprep could not contact a replica for partition..." which is described in detail here: http://support.microsoft.com/kb/949257 I've also attached the AdPrep.log file for full details. So when I try to run DCPromo on my new Server 2008 PDC (it's not the PDC yet, but want it to be soon), I get an error saying that /rodcprep hasn't ran so there could be errors if I continue. Anyone ran into this or have any suggestions on how to help? Can Dsmgmt be ran on server 2003 to help solve this? Assuming it's a partition error.

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  • Collision Error

    - by Manji
    I am having trouble with collision detection part of the game. I am using touch events to fire the gun as you will see in the video. Note, the android icon is a temporary graphic for the bullets When ever the user touches (represented by clicks in the video)the bullet appears and kills random sprites. As you can see it never touches the sprites it kills or kill the sprites it does touch. My Question is How do I fix it, so that the sprite dies when the bullet hits it? Collision Code snippet: //Handles Collision private void CheckCollisions(){ synchronized(mSurfaceHolder){ for (int i = sprites.size() - 1; i >= 0; i--){ Sprite sprite = sprites.get(i); if(sprite.isCollision(bullet)){ sprites.remove(sprite); mScore++; if(sprites.size() == 0){ mLevel = mLevel +1; currentLevel++; initLevel(); } break; } } } } Sprite Class Code Snippet: //bounding box left<right and top>bottom int left ; int right ; int top ; int bottom ; public boolean isCollision(Beam other) { // TODO Auto-generated method stub if(this.left>other.right || other.left<other.right)return false; if(this.bottom>other.top || other.bottom<other.top)return false; return true; } EDIT 1: Sprite Class: public class Sprite { // direction = 0 up, 1 left, 2 down, 3 right, // animation = 3 back, 1 left, 0 front, 2 right int[] DIRECTION_TO_ANIMATION_MAP = { 3, 1, 0, 2 }; private static final int BMP_ROWS = 4; private static final int BMP_COLUMNS = 3; private static final int MAX_SPEED = 5; private HitmanView gameView; private Bitmap bmp; private int x; private int y; private int xSpeed; private int ySpeed; private int currentFrame = 0; private int width; private int height; //bounding box left<right and top>bottom int left ; int right ; int top ; int bottom ; public Sprite(HitmanView gameView, Bitmap bmp) { this.width = bmp.getWidth() / BMP_COLUMNS; this.height = bmp.getHeight() / BMP_ROWS; this.gameView = gameView; this.bmp = bmp; Random rnd = new Random(); x = rnd.nextInt(gameView.getWidth() - width); y = rnd.nextInt(gameView.getHeight() - height); xSpeed = rnd.nextInt(MAX_SPEED * 2) - MAX_SPEED; ySpeed = rnd.nextInt(MAX_SPEED * 2) - MAX_SPEED; } private void update() { if (x >= gameView.getWidth() - width - xSpeed || x + xSpeed <= 0) { xSpeed = -xSpeed; } x = x + xSpeed; if (y >= gameView.getHeight() - height - ySpeed || y + ySpeed <= 0) { ySpeed = -ySpeed; } y = y + ySpeed; currentFrame = ++currentFrame % BMP_COLUMNS; } public void onDraw(Canvas canvas) { update(); int srcX = currentFrame * width; int srcY = getAnimationRow() * height; Rect src = new Rect(srcX, srcY, srcX + width, srcY + height); Rect dst = new Rect(x, y, x + width, y + height); canvas.drawBitmap(bmp, src, dst, null); } private int getAnimationRow() { double dirDouble = (Math.atan2(xSpeed, ySpeed) / (Math.PI / 2) + 2); int direction = (int) Math.round(dirDouble) % BMP_ROWS; return DIRECTION_TO_ANIMATION_MAP[direction]; } public boolean isCollision(float x2, float y2){ return x2 > x && x2 < x + width && y2 > y && y2 < y + height; } public boolean isCollision(Beam other) { // TODO Auto-generated method stub if(this.left>other.right || other.left<other.right)return false; if(this.bottom>other.top || other.bottom<other.top)return false; return true; } } Bullet Class: public class Bullet { int mX; int mY; private Bitmap mBitmap; //bounding box left<right and top>bottom int left ; int right ; int top ; int bottom ; public Bullet (Bitmap mBitmap){ this.mBitmap = mBitmap; } public void draw(Canvas canvas, int mX, int mY) { this.mX = mX; this.mY = mY; canvas.drawBitmap(mBitmap, mX, mY, null); } }

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  • disk space error, cant use internet

    - by James
    after trying to install drivers using sudo apt-get update && sudo apt-get upgrade, im faced with a message saying no space left on device, i ran disk usage analyzer as root and there was three folders namely, main volume, home folder, and my 116gb hard drive (which is practically empty) yet both other folders are full, which is stopping me installing drivers because of space, how do i get ubuntu to use this space on my hard drive? its causing problems because i cant gain access to the internet as i cant download drivers when i havnt got enough space, this happens every time i try it

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  • Dell 620 display is too bright to use

    - by keith
    I have a Dell D620 with a display problem. In windows 7 the display seems to be too bright, the text is broken up, the only way to see the mouse is at a very oblique angle. Changing the brightness with fn and brightness control has little/no effect. When I put it in high contrast mode I can see all the colors, but any windows pictures etc are still useless. I cannot get it to connect to an external monitor via VGA port or via a USB-VGA connector.

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  • Multi monitor windows positioning problem

    - by Peter Stegnar
    I need a good multi monitor tool mainly to gain control over the windows positioning. I have problem that closed window/application remembers at which monitors it was (closed). I have disconnect this monitor (this is often LCD TV) I have problem with this "remembering" windows/applications that was closed in LCD TV are out of sight when LCD TV is disconnected. What is the best practice to deal with this problem other that that not to close windows on this monitor)? Are there any good multi-monitor software to deal with this?

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  • sudo apt-get update error ubuntu 12.04

    - by user111172
    Hi I'm new in Linux and I need your help :) Every time when i type sudo apt-get update it shows: alphaog@alphaog-HP-Pavilion-DV7:~$ sudo apt-get update E: Type 'ain' is not known on line 3 in source list /etc/apt/sources.list.d/ricotz-testing-precise.list E: The list of sources could not be read. I tried gksu gedit /etc/apt/sources.list and put # in front third line but it still doesn't work. Please Help! :)

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  • When clicking an irc:// link, a new instance of chatzilla opens instead of the existing one being used.

    - by WebDevHobo
    That is my problem in a nutshell. I'm running Win7 32-bit. I have chatzilla on XulRunner, so not as the Firefox add-on. When I clock any irc:// link, a new instance of Chatzilla will be started. I have a lot of startup-commands set, so all those will be executed. I stop the new instance before it takes off, but this is rather annoying. Firefox application setting just link to the path where the executable is, with no option to set any command-line stuff to make the existing instance be used. Is there any firefox or windows setting that I can manipulate, so that when firefox calls chatzilla.exe, the existing instance is used instead of a new one opened?

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  • Radeon 4670 Card Has 2 DVI Outs But Only Works When One is used in Win7 x64

    - by ssmith
    I have an ATI XFX Radeon 4670 1GB video card in a Windows 7 Ultimate x64 setup. If I only use one monitor, all is well. If I plug in a second DVI cable to the card, both monitors go dark. I can get one or the other to display, but only when it is the only one plugged into the card. I'm really hoping for a dual-monitor setup here as that was the point of the card. I'm using ATI Radeon HD 4600 Series video drivers dated 11/24/09 (8.681.0.0) which are the latest from their site and are supposed to work with Vista or Win7 x64. When the computer boots with both displays connected, both monitors display the inital bios and boot screens. The Win7 splash screen also displays, but by the time it goes to the login screen, one monitor is offline.

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  • SSH broken, segfault error 4

    - by trampi
    i cannot connect to my server via ssh, it throws me a "server unexpectedly closed connection" after entering the password. in var/log/messages the only noteable message is: Apr 14 17:41:23 s15410270 kernel: sshd[3602]: segfault at c0 ip 7f0801acbdb0 sp 7fff0adff860 error 4 in libc-2.8.so[7f0801a87000+14f000] Apr 14 17:41:29 s15410270 kernel: sshd[3606]: segfault at c0 ip 7f75f9463db0 sp 7fff027971f0 error 4 in libc-2.8.so[7f75f941f000+14f000] This message appears after a log in attempt via ssh or via sftp Its a SuSE Linux server. I'm looking for help where to start to search for the error, i can still act as root via a serial console. edit: "server unexpectedly closed connection" only appears if i enter the correct password!

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  • How to Use 3 Monitors

    - by The.Anti.9
    Right now my setup has a nice big 24" flatscreen in the center, and a 19" flatscreen to the left. And a big gaping hole on the right. I have a 3rd monitor to put there, but I'm not sure how to get the computer to recognize it. Do I need a graphics card with 3 ports? Or can I span the monitors over non SLI-Linked graphics cards? Is it possible to plug my 3rd monitor into the on-board VGA port and have it work?

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  • an error while restoring windows 7 from a restore point

    - by user178231
    When I make a restore point and I come back to restore the windows 7, it gives this error: No restore point have been created on your computer system drives, to create a restore point open system protection. I've made a restore point why does it give this error? What should I do? I completely know how to make restore points and I've made some on the laptop and other devices but in my computer which have windows 7 when I make restore point and when I want to use them it gives the error! Please help. I'm not English so can't speak it well.

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  • How to open a pdf or a djvu on an specific instance of a document viewer?

    - by ciro
    I want using any free Linux document viewer that does both pdf and djvu (Okular, Evince, etc.) to do the following: magic_command('document-viewer','./11.pdf','instance1') magic_command('document-viewer','./21.djvu','instance2') two instances (windows) of document-viewer are opened one with 11.pdf and the other with 21.djvu then: magic_command('document-viewer','./12.djvu','instance1') magic_command('document-viewer','./22.pdf','instance2') the first instance (window) of document-viewer loads 12.djvu the second instance (window) of document-viewer loads 22.pdf

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  • Use xrandr to set the absolute position of the screen?

    - by Eli
    I am running XFCE on Fedora 15. I use xrandr to set the secondary display (HDMI-0) to be to the right of the primary (DVI-0), however it is always at the top-right. Is it possible to set the absolute position of the display (e.g. DVI-0 at 0,0 and HDMI-0 at 1920,56), or even set the display to be at the bottom-right? I cannot modify the Xorg.conf, which would be the easy way, as that would mean generating an Xorg.conf file (there is none right now), and I do not know of any automated tool to do that (other than the fglrx driver). The reason why I need this is because I want to extend the XFCE panel accross both monitors, but with there being a 56-pixel-wide dead zone at the bottom I cannot do this.

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  • Does a portable secondary laptop LCD monitor exist?

    - by Dougnukem
    I'm looking to buy a portable secondary LCD monitor for my Macbook Pro, does anything like that exist? I found some laptops that provide a dual 15'' monitor solution (but it's already baked into the hardware). Also some ideas posted about creating this type of setup back in 2007. I'm looking for something that is as thin as a laptop LCD (with maybe a bulky power supply that I could easily daisy chain or plug into a power strip along with my laptop). How difficult would it be to buy a 17'' laptop screen and hook up a DVI connector and power supply, and build a simple monitor stand for it? I've gotten to used to a dual-monitor setup at work and at home with my laptop that having to use my laptop in single-screen mode makes me feel crippled.

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