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  • Embarrassingly parallel workflow creates too many output files

    - by Hooked
    On a Linux cluster I run many (N > 10^6) independent computations. Each computation takes only a few minutes and the output is a handful of lines. When N was small I was able to store each result in a separate file to be parsed later. With large N however, I find that I am wasting storage space (for the file creation) and simple commands like ls require extra care due to internal limits of bash: -bash: /bin/ls: Argument list too long. Each computation is required to run through a qsub scheduling algorithm so I am unable to create a master program which simply aggregates the output data to a single file. The simple solution of appending to a single fails when two programs finish at the same time and interleave their output. I have no admin access to the cluster, so installing a system-wide database is not an option. How can I collate the output data from embarrassingly parallel computation before it gets unmanageable?

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  • Compiling a class using Java code using process

    - by Noona
    I have this piece of code that compiles a class called tspClassName, when I compile using this code: Process compileProc = null; try { compileProc = Runtime.getRuntime().exec("javac -classpath ." + File.separator + "src" + File.separator + File.separator + "generated." + tspClassName + ".java -d ." + File.separator + "bin"); // catch exception if (compileProc.exitValue() != 0) { System.out.println("Compile exit status: " + compileProc.exitValue()); System.err.println("Compile error:" + compileProc.getErrorStream()); it outputs this: "Compile exit status: 2 Compile error:java.io.FileInputStream@17182c1" The class tspClassName.java compiles without errors otherwise, so I am guessing it has to do with the path,and in my eclipse project, the tspClassName.java resides in package homework4.generated inside src, is there something wrong with the path that I use in the code? thanks

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  • How do I return a perl variable to a .ksh script?

    - by Dave
    I have a .ksh script that calls a perl pgm. The perl pgm creates some important data that the .ksh script needs to act on. Example: .ksh pgm #!/usr/bin/ksh abc.pl > $logFile # perl pgm creates variable $importantData See below. # HOW DO I GET THE .KSH SCRIPT TO SEE $importantData ??? def.ksh $importantData # send important data to another .ksh script exit . Perl pgm $importantData = somefunction(); exit;

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  • Keeping the application state - deploy/install apk

    - by Buffalo
    I'm trying to have my application minimized when paused and then when it's resumed, it should be restored to its previous state, not recreated. This works perfectly when deploying the application on a device/emulator from Eclipse. The problem occurs when I get the apk (either from bin\ or from Project - Android tools - Export signed application package) and install it on a device with a file browser (Astro): the application is destroyed when paused and then recreated. I can call moveTaskToBack(true); in my activity, yet it will still be recreated when launching it. All the discussions around this are based on achieving the opposite: closing the application when minimizing it. Is there any way of achieving what I want?

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  • Shell script for testing

    - by Helltone
    I want a simple testing shell script that launches a program N times in parallel, and saves each different output to a different file. I have made a start that launches the program in parallel and saves the output, but how can I keep only the outputs that are different? Also how can I actually make the echo DONE! indicate the end? #!/bin/bash N=10 for((i=1; j<=$N; ++i)); do ./test > output-$N & done echo DONE!

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  • MonoDevelop seems to hang (not unresponsive) when building csprojs

    - by Michael Shimmins
    Building a solution from Visual Studio in mono develop seems to have some issues. I'm hoping someone else has experienced this and has some suggestions. The actual dcms process goes pretty quickly, but in between projects it hangs after printing: Building: XXX.YYY.ZZZ (Debug) After a few minutes (been 10 so far on this current run), it jumps to: Performing main compilation... /Library/Frameworks/Mono.framework/Versions/2.10.1/bin/dmcs /noconfig "/... Build complete -- 0 errors, 0 warnings Building: XXX.YYY.ZZZ (Debug) Then hangs again for another few minutes. This is a sln file with 29 csproj projects in it that was originally created in Visual Studio 2010. I'm wondering if there is a better way to set this up - potentially a native MD file format?

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  • Django nose to run only project tests

    - by patroqueeet
    I added nose, django-nose, nose-exclude, coverage to my buildout.cfg and ran buildout. Furthermore I added the TEST_RUNNER and the NOSE_ARGS to my settings.py. In the last step I created a exclude_dirs.txt and included it into the NOSE_ARGS. That worked so far. Finally I ran bin/django testto run the tests of my project. I found out that every app inside INSTALLED_APP is run and that even parts of the django core models are run. How can I limit this to my project only without exernal packages?

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  • Qt C++ signals and slots did not fire

    - by Xegara
    I have programmed Qt a couple of times already and I really like the signals and slots feature. But now, I guess I'm having a problem when a signal is emitted from one thread, the corresponding slot from another thread is not fired. The connection was made in the main program. This is also my first time to use Qt for ROS which uses CMake. The signal fired by the QThread triggered their corresponding slots but the emitted signal of my class UserInput did not trigger the slot in tflistener where it supposed to. I have tried everything I can. Any help? The code is provided below. Main.cpp #include <QCoreApplication> #include <QThread> #include "userinput.h" #include "tfcompleter.h" int main(int argc, char** argv) { QCoreApplication app(argc, argv); QThread *thread1 = new QThread(); QThread *thread2 = new QThread(); UserInput *input1 = new UserInput(); TfCompleter *completer = new TfCompleter(); QObject::connect(input1, SIGNAL(togglePause2()), completer, SLOT(toggle())); QObject::connect(thread1, SIGNAL(started()), completer, SLOT(startCounting())); QObject::connect(thread2, SIGNAL(started()), input1, SLOT(start())); completer->moveToThread(thread1); input1->moveToThread(thread2); thread1->start(); thread2->start(); app.exec(); return 0; } What I want to do is.. There are two seperate threads. One thread is for the user input. When the user enters [space], the thread emits a signal to toggle the boolean member field of the other thread. The other thread 's task is to just continue its process if the user wants it to run, otherwise, the user does not want it to run. I wanted to grant the user to toggle the processing anytime that he wants, that's why I decided to bring them into seperate threads. The following codes are the tflistener and userinput. tfcompleter.h #ifndef TFCOMPLETER_H #define TFCOMPLETER_H #include <QObject> #include <QtCore> class TfCompleter : public QObject { Q_OBJECT private: bool isCount; public Q_SLOTS: void toggle(); void startCounting(); }; #endif tflistener.cpp #include "tfcompleter.h" #include <iostream> void TfCompleter::startCounting() { static uint i = 0; while(true) { if(isCount) std::cout << i++ << std::endl; } } void TfCompleter::toggle() { // isCount = ~isCount; std::cout << "isCount " << std::endl; } UserInput.h #ifndef USERINPUT_H #define USERINPUT_H #include <QObject> #include <QtCore> class UserInput : public QObject { Q_OBJECT public Q_SLOTS: void start(); // Waits for the keypress from the user and emits the corresponding signal. public: Q_SIGNALS: void togglePause2(); }; #endif UserInput.cpp #include "userinput.h" #include <iostream> #include <cstdio> // Implementation of getch #include <termios.h> #include <unistd.h> /* reads from keypress, doesn't echo */ int getch(void) { struct termios oldattr, newattr; int ch; tcgetattr( STDIN_FILENO, &oldattr ); newattr = oldattr; newattr.c_lflag &= ~( ICANON | ECHO ); tcsetattr( STDIN_FILENO, TCSANOW, &newattr ); ch = getchar(); tcsetattr( STDIN_FILENO, TCSANOW, &oldattr ); return ch; } void UserInput::start() { char c = 0; while (true) { c = getch(); if (c == ' ') { Q_EMIT togglePause2(); std::cout << "SPACE" << std::endl; } c = 0; } } Here is the CMakeLists.txt. I just placed it here also since I don't know maybe the CMake has also a factor here. CMakeLists.txt ############################################################################## # CMake ############################################################################## cmake_minimum_required(VERSION 2.4.6) ############################################################################## # Ros Initialisation ############################################################################## include($ENV{ROS_ROOT}/core/rosbuild/rosbuild.cmake) rosbuild_init() set(CMAKE_AUTOMOC ON) #set the default path for built executables to the "bin" directory set(EXECUTABLE_OUTPUT_PATH ${PROJECT_SOURCE_DIR}/bin) #set the default path for built libraries to the "lib" directory set(LIBRARY_OUTPUT_PATH ${PROJECT_SOURCE_DIR}/lib) # Set the build type. Options are: # Coverage : w/ debug symbols, w/o optimization, w/ code-coverage # Debug : w/ debug symbols, w/o optimization # Release : w/o debug symbols, w/ optimization # RelWithDebInfo : w/ debug symbols, w/ optimization # MinSizeRel : w/o debug symbols, w/ optimization, stripped binaries #set(ROS_BUILD_TYPE Debug) ############################################################################## # Qt Environment ############################################################################## # Could use this, but qt-ros would need an updated deb, instead we'll move to catkin # rosbuild_include(qt_build qt-ros) rosbuild_find_ros_package(qt_build) include(${qt_build_PACKAGE_PATH}/qt-ros.cmake) rosbuild_prepare_qt4(QtCore) # Add the appropriate components to the component list here ADD_DEFINITIONS(-DQT_NO_KEYWORDS) ############################################################################## # Sections ############################################################################## #file(GLOB QT_FORMS RELATIVE ${CMAKE_CURRENT_SOURCE_DIR} ui/*.ui) #file(GLOB QT_RESOURCES RELATIVE ${CMAKE_CURRENT_SOURCE_DIR} resources/*.qrc) file(GLOB_RECURSE QT_MOC RELATIVE ${CMAKE_CURRENT_SOURCE_DIR} FOLLOW_SYMLINKS include/rgbdslam_client/*.hpp) #QT4_ADD_RESOURCES(QT_RESOURCES_CPP ${QT_RESOURCES}) #QT4_WRAP_UI(QT_FORMS_HPP ${QT_FORMS}) QT4_WRAP_CPP(QT_MOC_HPP ${QT_MOC}) ############################################################################## # Sources ############################################################################## file(GLOB_RECURSE QT_SOURCES RELATIVE ${CMAKE_CURRENT_SOURCE_DIR} FOLLOW_SYMLINKS src/*.cpp) ############################################################################## # Binaries ############################################################################## rosbuild_add_executable(rgbdslam_client ${QT_SOURCES} ${QT_MOC_HPP}) #rosbuild_add_executable(rgbdslam_client ${QT_SOURCES} ${QT_RESOURCES_CPP} ${QT_FORMS_HPP} ${QT_MOC_HPP}) target_link_libraries(rgbdslam_client ${QT_LIBRARIES})

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  • Sum in shell script

    - by Dinis Monteiro
    Why can't I create a sum of total words in this script? I get the result something like: 120+130 but it isn't 250 (as I expected)! Is there any reason? #!/bin/bash while [ -z "$count" ] ; do echo -e "request :: please enter file name " echo -e "\n\tfile one : \c" read count itself=counter.sh countWords=`wc -w $count |cut -d ' ' -f 1` countLines=`wc -l $count |cut -d ' ' -f 1` countWords_=`wc -w $itself |cut -d ' ' -f 1` echo "Number of lines: " $countLines echo "Number of words: " $countWords echo "Number of words -script: " $countWords_ echo "Number of words -total " $countWords+$countWords_ done if [ ! -e $count ] ; then echo -e "error :: file one $count doesn't exist. can't proceed." read empty exit 1 fi

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  • yet another confusion with multiprocessing error, 'module' object has no attribute 'f'

    - by gatoatigrado
    I know this has been answered before, but it seems that executing the script directly "python filename.py" does not work. I have Python 2.6.2 on SuSE Linux. Code: #!/usr/bin/python # -*- coding: utf-8 -*- from multiprocessing import Pool p = Pool(1) def f(x): return x*x p.map(f, [1, 2, 3]) Command line: > python example.py Process PoolWorker-1: Traceback (most recent call last): File "/usr/lib/python2.6/multiprocessing/process.py", line 231, in _bootstrap self.run() File "/usr/lib/python2.6/multiprocessing/process.py", line 88, in run self._target(*self._args, **self._kwargs) File "/usr/lib/python2.6/multiprocessing/pool.py", line 57, in worker task = get() File "/usr/lib/python2.6/multiprocessing/queues.py", line 339, in get return recv() AttributeError: 'module' object has no attribute 'f'

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  • Accessing variable from ARGV

    - by snaken
    I'm writing a cPanel postwwwact script, if you're not familiar with the script its run after a new account is created. it relies on the user account variable being passed to the script which i then use for various things (creating databases etc). However, I can't seem to find the right way to access the variable i want. I'm not that good with shell scripts so i'd appreciate some advice. I had read somewhere that the value i wanted would be included in $ARGV{'user'} but this simply gives "root" as opposed to the value i need. I've tried looping through all the arguments (list of arguments here) like this: #!/bin/sh for var do touch /root/testvars/$var done and the value i want is in there, i'm just not sure how to accurately target it. There's info here on doing this with PHP or Perl but i have to do this as a shell script. EDIT Ideally i would like to be able to call the variable by something other than $1 or $2 etc as this would create issues if an argument is added or removed Any ideas?

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  • PHP 5.2.13 thowing errors on AIX

    - by Thumbeti
    Hi All, On AIX 5.3 (TL 5 to 11) in my application I have updated PHP version from 5.2.6 to 5.2.13. Since then, executing php.bin throwing the following errors: =================================================================== PHP Warning: PHP Startup: Unable to load dynamic library '/opt/pdag/lib/extensions/curl.so' - rtld: 0712-001 Symbol zend_wrong_param_count was referenced from module /opt/pdag/lib/extensions/curl.so(), but a runtime definition of the symbol was not found. rtld: 0712-001 Symbol _ecalloc was referenced from module /opt/pdag/lib/extensions/curl.so(), but a runtime definition of the symbol was not found. rtld: 0712-001 Symbol zend_llist_init was referenced from module /opt/pdag/lib/extensions/curl.so(), but a runtime definition of the symbol was not found. rtld: 0712-001 Symbol zend_register_resource was referenced from module /opt/pdag/lib/extensions/curl.so(), but a runtime definition of the symbol was not found. =================================================================== With PHP version 5.2.6, this issue is not there? Anything i am missing here? Thanks & Regards, Thumbeti

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  • how to start stop tomcat server using CMD?

    - by ali
    i set the path for the tomcat and set all variables like 1.JAVA_HOME=C:\Program Files (x86)\Java\jdk1.6.0_22 2.CATALINA_HOME=G:\springwork\server\apache-tomcat-6.0.29 3.CLASSPATH=G:\springwork\server\apache-tomcat-6.0.29\lib\servlet-api.jar;G:\springwork\server\apache-tomcat-6.0.29\lib\jsp-api.jar;.; when i go to bin folder and double click on startup.bat then my tomcat start and when i double click on shutdown.bat tomcat is stop. But I want using CMD start and stop the tomcat. And in any folder i write command startup.bat the server will start and when i write the server will stop...... Thanks in advace..........

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  • How to begin writing an Application Server over Apache?

    - by Cracker
    For my college project, I want to create a simple application server in C that runs over Apache. Like .php, .asp, .jsp, the extension of my files would be .sas. I have already written a parser which reads the .sas files and generates the output. For example, consider a file index.sas with the below code: <% echo "Hello"; %> Now, if I execute: sas index.sas The result would be: Hello Now I want to use this program as an application server over Apache just as PHP, Tomcat, etc. work over Apache. I have heard of cgi-bin but I think PHP uses a different approach. I want to learn the approach which PHP uses. Please advice.

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  • Xcodebuild failing to pick up environment values from project file?

    - by egrunin
    I'm using Xcode 3.2.6, MacOSX. I have a globally visible environment setting: ICU_SRC=~/Documents/icu/source This really is an environment setting, it's set at login time. When I open up Terminal, it's there. In my project, under Header Search Paths I've added this: $(ICU_SRC)/i18n $(ICU_SRC)/common These expand correctly when I compile inside the IDE. When I look at the build results, I see this: -I/Users/eric.grunin/Documents/icu/source/i18n -I/Users/eric.grunin/Documents/icu/source/common When I build from the command line, however, it fails. What I see is this: -I/i18n -I/common Here's the command I'm using to compile: /usr/bin/env -i xcodebuild -project my_project.xcodeproj -target "my_program" -configuration Release -sdk macosx10.6 build What am I doing wrong? Edited to add: Apple explains Setting environment variables for user processes

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  • Binning into timeslots - Is there a better way than using list comp?

    - by flyingcrab
    I have a dataset of events (tweets to be specific) that I am trying to bin / discretize. The following code seems to work fine so far (assuming 100 bins): HOUR = timedelta(hours=1) start = datetime.datetime(2009,01,01) z = [dt + x*HOUR for x in xrange(1, 100)] But then, I came across this fateful line at python docs 'This makes possible an idiom for clustering a data series into n-length groups using zip(*[iter(s)]*n)'. The zip idiom does indeed work - but I can't understand how (what is the * operator for instance?). How could I use to make my code prettier? I'm guessing this means I should make a generator / iterable for time that yields the time in graduations of an HOUR?

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  • how to test if a string is a valid UTF16 string?

    - by superb
    I am using mongodb and javascript to do some string processing. Now I got some error like: Sun May 23 07:42:20 Assertion failure JS_EncodeCharacters( _context , s , srclen , dst , &len) scripting/engine_spidermonkey.cpp 152 0x80f4f7e 0x80f8794 0x811525b 0x811a953 0x8119fc4 0x8111bc5 0x81b408e 0x81c4ee7 0x81b4a10 0x817a881 0x817a7d8 0x817a6e2 0x811e1bb 0x80a777b 0x80a8f8a 0xb7cb2455 0x80a37a1 mongodb-linux-i686-1.4.2/bin/mongo(_ZN5mongo12sayDbContextEPKc+0xfe) [0x80f4f7e] After doing some google, I find that JS_EncodeCharacters return false if the input is not a valid UTF16 string. (if spidermonkey is build with UTF-8 enabled) So I was wondering how to test if the input string if a proper UTF16 string? so I can skip such kind of string to avoid problem ... Thanks

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  • Couchbase (ex. membase) solution to dump all keys in a bucket

    - by j99
    I was googling around and found various python + tap solutions that should enable me to dump all keys from a bucket but none of them worked for me. I have a bucket at port 11230 and I need to get a dump of all keys in order to fill them into sphinx search engine. If I execute: # python /opt/couchbase/lib/python/tap_example.py 127.0.0.1:11230 I get the following output: info: New bin connection from None error: uncaptured python exception, closing channel <tap.TapConnection connected at 0x7f5d287184d0> (<type 'exceptions.AssertionError'>: [/usr/lib/python2.6/asyncore.py|read|78] [/usr/lib/python2.6/asyncore.py|handle_read_event|428] [/opt/couchbase/lib/python/mc_bin_server.py|handle_read|325]) this error is the same even if I try some other host or port. I also tried many other python scripts that I found on forums and groups but all of them produced the same error. My primary development environment includes PHP & Perl on Debian linux box but I will take any solution that would just dump all the keys into plain text file. Thank you for any help!

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  • Facing a problem when i am making a setup of Windows Service.

    - by prateeksaluja20
    i am trying to make a setup of windows service.but when i was building the setup the output is like that.. ------ Build started: Project: TwitterService, Configuration: Debug Any CPU ------ TwitterService - C:\Users\Globus-n2\Desktop\LatestTweetMati\TwitterService\bin\Debug\TwitterService.exe ------ Starting pre-build validation for project 'Setup' ------ ------ Pre-build validation for project 'Setup' completed ------ ------ Build started: Project: Setup, Configuration: Debug ------ Building file 'C:\Users\Globus-n2\Desktop\LatestTweetMati\Setup\Debug\Setup.msi'... Packaging file 'TwitterService.exe.config'... Packaging file 'GlobusLib.dll'... Packaging file 'TwitterService.exe'... Packaging file 'GlobusTwitterLib.dll'... ========== Build: 1 succeeded or up-to-date, 1 failed, 0 skipped ========== setup is failed i am not getting any error.i have tried to make a new copy but still problem remain.i have tried to add those dll again but problem is not solved.can any one please help me to solve this problem.il really very thankful if any one try to solve this problem.

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  • Test for undefined references in Linux

    - by Charles
    Is there a built in linux utility that I can use to test a newly compiled shared library for external undefined references? Gcc seems to be intelligent enough to check for undefined symbols in my own binary, but if the symbol is a reference to another library gcc does not check at link time. Instead I only get the message when I try to link to my new library from another program. It seems a little silly to get undefined reference messages in a library when I am compiling a different project so I want to know if I can do a check on all references internal and external when I build the library not when I link to it. Example error: make -C UnitTests debug make[1]: Entering directory `~/projects/Foo/UnitTests` g++ [ tons of objects ] -L../libbar/bin -lbar -o UnitTests libbar.so: undefined reference to `DoSomethingFromAnotherLibrary` collect2: ld returned 1 exit status make[1]: *** [~/projects/Foo/UnitTests] Error 1

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  • How can I tell Phusion Passenger which python to use?

    - by Mike
    I'm using Phusion Passenger with a ruby app and I'd also like to set it up to work with an django appengine app I'm working on. Googling for "passenger_wsgi.py" I was able to get the following very simple non-django app working on passenger: passenger_wsgi.py: def application(environ, start_response): response_headers = [('Content-type','text/plain')] start_response('200 OK', response_headers) return ['Hello World!\n'] However, if I add the line import django.core.handlers.wsgi into the mix, I get 'An error occurred importing your passenger_wsgi.py'. By printing out the sys.path I've discovered that at least part of the reason is because Passenger is using the wrong python installation on my machine. How can I configure Passenger (on apache) to use /opt/local/bin/python2.5 instead of the system default python?

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  • Perl, dereference array of references

    - by Mike
    In the following Perl code, I would expect to be referencing an array reference inside an array #!/usr/bin/perl use strict; use warnings; my @a=([1,2],[3,4]); my @b = @$a[0]; print $b[0]; However it doesn't seem to work. I would expect it to output 1. @a is an array of references @b is $a[1] dereferenced (I think) So what's the problem?

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  • PHP/MySQL: Storing and retrieving UUIDS

    - by Greg
    I'm trying to add UUIDs to a couple of tables, but I'm not sure what the best way to store/retrieve these would be. I understand it's far more efficient to use BINARY(16) instead of VARCHAR(36). After doing a bit of research, I also found that you can convert a UUID string to binary with: UNHEX(REPLACE(UUID(),'-','')) Pardon my ignorance, but is there an easy way to this with PHP and then turn it back to a string, when needed, for readability? Also, would it make much difference if I used this as a primary key instead of auto_increment? EDIT: Found part of the answer: $bin = pack("h*", str_replace('-', '', $guid)); How would you unpack it?

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  • python: multiline regular expression

    - by facha
    Hi, everyone I have a piece of text and I've got to parse usernames and hashes out of it. Right now I'm doing it with two regular expressions. Could I do it with just one multiline regular expression? #!/usr/bin/env python import re test_str = """ Hello, UserName. Please read this looooooooooooooooong text. hash Now, write down this hash: fdaf9399jef9qw0j. Then keep reading this loooooooooong text. Hello, UserName2. Please read this looooooooooooooooong text. hash Now, write down this hash: gtwnhton340gjr2g. Then keep reading this loooooooooong text. """ logins = re.findall('Hello, (?P<login>.+).',test_str) hashes = re.findall('hash: (?P<hash>.+).',test_str)

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  • How can I convert a file full of unix time strings to human readable dates?

    - by skymook
    I am processing a file full of unix time strings. I want to convert them all to human readable. The file looks like so: 1153335401 1153448586 1153476729 1153494310 1153603662 1153640211 Here is the script: #! /bin/bash FILE="test.txt" cat $FILE | while read line; do perl -e 'print scalar(gmtime($line)), "\n"' done This is not working. The output I get is Thu Jan 1 00:00:00 1970 for every line. I think the line breaks are being picked up and that is why it is not working. Any ideas? I'm using Mac OSX is that makes any difference.

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