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  • Using Python to traverse a parent-child data set

    - by user132748
    I have a dataset of two columns in a csv file. Th purpose of this dataset is to provide a linking between two different id's if they belong to the same person. e.g (2,3,5 belong to 1) e.g COLA COLB 1 2 ; 1 3 ; 1 5 ; 2 6 ; 3 7 ; 9 10 In the above example 1 is linked to 2,3,5 and 2 is the linked to 6 and 3 is linked to 7. What I am trying to achieve is to identify all records which are linked to 1 directly (2,3,5) or indirectly(6,7) and be able to say that these id's in column B belong to same person in column A and then either dedupe or add a new column to the output file which will have 1 populated for all rows that link to 1 e.g of expected output colA colB GroupField 1 2 1; 1 3 1; 1 5 1 ; 2 6 1 ;3 7 1; 9 10 9; 10 11 9 I am a newbie and so am not sure on how to approach this problem.Appreciate any inputs you'll can provide.

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  • Converting large files in python

    - by Cenoc
    I have a few files that are ~64GB in size that I think I would like to convert to hdf5 format. I was wondering what the best approach for doing so would be? Reading line-by-line seems to take more than 4 hours, so I was thinking of using multiprocessing in sequence, but was hoping for some direction on what would be the most efficient way without resorting to hadoop. Any help would be very much appreciated. (and thank you in advance) EDIT: Right now I'm just doing a for line in fd: approach. After that right now I just check to make sure I'm picking out the right sort of data, which is very short; I'm not writing anywhere, and it's taking around 4 hours to complete with that. I can't read blocks of data because the blocks in this weird file format I'm reading are not standard, it switches between three different sizes... and you can only tell which by reading the first few characters of the block.

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  • How to control gnome-terminal from Python scrypt?

    - by user936401
    I am developing an application in PyGtk, and would like to launch a gnome-terminal and output commands to it. My user should then be able to modify the command, or maybe ignore using the up arrow ... etc. I have been able to launch a terminal, but can't work out how to send commands. This is how my application starts: class App(Gtk.Window): def __init__(self): Gtk.Window.__init__(self) process=subprocess.Popen(["gnome-terminal", "--class=App", "--name=app"], shell=False, stdout=subprocess.PIPE, stderr=subprocess.PIPE) response,error=process.communicate()

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  • python factory function best practices

    - by Jason S
    Suppose I have a file foo.py containing a class Foo: class Foo(object): def __init__(self, data): ... Now I want to add a function that creates a Foo object in a certain way from raw source data. Should I put it as a static method in Foo or as another separate function? class Foo(object): def __init__(self, data): ... # option 1: @staticmethod def fromSourceData(sourceData): return Foo(processData(sourceData)) # option 2: def makeFoo(sourceData): return Foo(processData(sourceData)) I don't know whether it's more important to be convenient for users: foo1 = foo.makeFoo(sourceData) or whether it's more important to maintain clear coupling between the method and the class: foo1 = foo.Foo.fromSourceData(sourceData)

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  • How to play a fixed frequency sound using Python

    - by user98415
    I have tried a number of ways of playing a fixed frequency sound (e.g. 1000Hz) and nothing works. I have downloaded "beep" and that makes no noise. I tried interfacing to pyao, and that had no effect. I tried interfacing to audiere, and get a runtime error indicating the library could not be found, despite installing it from the software centre. Any guidance for installation of appropriate libraries and relevant code would be most appreciated. I cannot generate .mp3/ .wav files for this, but need to generate the tones at run time. Many thanks for you

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  • Recursive function with for loop python

    - by user134743
    I have a question that should not be too hard but it has been bugging me for a long time. I am trying to write a function that searches in a directory that has different folders for all files that have the extension jpg and which size is bigger than 0. It then should print the sum of the size of the files that are in these categories. What I am doing right now is def myFuntion(myPath, fileSize): for myfile in glob.glob(myPath): if os.path.isdir(myFile): myFunction(myFile, fileSize) if (fnmatch.fnmatch(myFile, '*.jpg')): if (os.path.getsize(myFile) > 1): fileSize = fileSize + os.path.getsize(myFile) print "totalSize: " + str(fileSize) THis is not giving me the right result. It sums the sizes of the files of one directory but it does not keep suming the rest. For example if I have these paths C:/trial/trial1/trial11/pic.jpg C:/trial/trial1/trial11/pic1.jpg C:/trial/trial1/trial11/pic2.jpg and C:/trial/trial2/trial11/pic.jpg C:/trial/trial2/trial11/pic1.jpg C:/trial/trial2/trial11/pic2.jpg I will get the sum of the first three and the the size of the last 3 but I won´t get the size of the 6 together, if that makes sense. Thank you so much for your help!

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  • Python not Working in Vim

    - by jdg
    I have a new install of VIM from the automatic windows installer: gvim73_46.exe I have Python 2.7 (32 bit) installed. If I open gvim, and type: :set python? I get E518: Unknown option. If I try typing: :python 'hello' Vim crashes. What could be wrong? Here are the contents of :version in case they are helpful, although python is installed, and it is using Python 2.7. I also checked, and C:\Windows\System32\python27.dll is where it should be... I am really lost here. Does anyone have any ideas as to what is going wrong? VIM - Vi IMproved 7.3 (2010 Aug 15, compiled Oct 27 2010 17:59:02) MS-Windows 32-bit GUI version with OLE support Included patches: 1-46 Compiled by Bram@KIBAALE Big version with GUI. Features included (+) or not (-): +arabic +autocmd +balloon_eval +browse ++builtin_terms +byte_offset +cindent +clientserver +clipboard +cmdline_compl +cmdline_hist +cmdline_info +comments +conceal +cryptv +cscope +cursorbind +cursorshape +dialog_con_gui +diff +digraphs -dnd -ebcdic +emacs_tags +eval +ex_extra +extra_search +farsi +file_in_path +find_in_path +float +folding -footer +gettext/dyn -hangul_input +iconv/dyn +insert_expand +jumplist +keymap +langmap +libcall +linebreak +lispindent +listcmds +localmap -lua +menu +mksession +modify_fname +mouse +mouseshape +multi_byte_ime/dyn +multi_lang -mzscheme +netbeans_intg +ole -osfiletype +path_extra +perl/dyn +persistent_undo -postscript +printer -profile +python/dyn +python3/dyn +quickfix +reltime +rightleft +ruby/dyn +scrollbind +signs +smartindent -sniff +startuptime +statusline -sun_workshop +syntax +tag_binary +tag_old_static -tag_any_white +tcl/dyn -tgetent -termresponse +textobjects +title +toolbar +user_commands +vertsplit +virtualedit +visual +visualextra +viminfo +vreplace +wildignore +wildmenu +windows +writebackup -xfontset -xim -xterm_save +xpm_w32 system vimrc file: "$VIM\vimrc" user vimrc file: "$HOME_vimrc" 2nd user vimrc file: "$VIM_vimrc" user exrc file: "$HOME_exrc" 2nd user exrc file: "$VIM_exrc" system gvimrc file: "$VIM\gvimrc" user gvimrc file: "$HOME_gvimrc" 2nd user gvimrc file: "$VIM_gvimrc" system menu file: "$VIMRUNTIME\menu.vim" Compilation: cl -c /W3 /nologo -I. -Iproto -DHAVE_PATHDEF -DWIN32 -DFEAT_CSCOPE -DFEAT_NETBEANS_INTG -DFEAT_XPM_W32 -DWINVER=0x0400 -D_WIN32_WINNT=0x0400 /Fo.\ObjGOLYHTR/ /Ox /GL -DNDEBUG /Zl /MT -DFEAT_OLE -DFEAT_MBYTE_IME -DDYNAMIC_IME -DFEAT_GUI_W32 -DDYNAMIC_ICONV -DDYNAMIC_GETTEXT -DFEAT_TCL -DDYNAMIC_TCL -DDYNAMIC_TCL_DLL=\"tcl83.dll\" -DDYNAMIC_TCL_VER=\"8.3\" -DFEAT_PYTHON -DDYNAMIC_PYTHON -DDYNAMIC_PYTHON_DLL=\"python27.dll\" -DFEAT_PYTHON3 -DDYNAMIC_PYTHON3 -DDYNAMIC_PYTHON3_DLL=\"python31.dll\" -DFEAT_PERL -DDYNAMIC_PERL -DDYNAMIC_PERL_DLL=\"perl512.dll\" -DFEAT_RUBY -DDYNAMIC_RUBY -DDYNAMIC_RUBY_VER=191 -DDYNAMIC_RUBY_DLL=\"msvcrt-ruby191.dll\" -DFEAT_BIG /Fd.\ObjGOLYHTR/ /Zi Linking: link /RELEASE /nologo /subsystem:windows /LTCG:STATUS oldnames.lib kernel32.lib advapi32.lib shell32.lib gdi32.lib comdlg32.lib ole32.lib uuid.lib /machine:i386 /nodefaultlib gdi32.lib version.lib winspool.lib comctl32.lib advapi32.lib shell32.lib /machine:i386 /nodefaultlib libcmt.lib oleaut32.lib user32.lib /nodefaultlib:python27.lib /nodefaultlib:python31.lib e:\tcl\lib\tclstub83.lib WSock32.lib e:\xpm\lib\libXpm.lib /PDB:gvim.pdb -debug

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  • Parallel processing in R 2.11 Windows 64-bit using SNOW not quite working

    - by Abhijit
    I'm running R 2.11 64-bit on a WinXP64 machine with 8 processors. With R 2.10.1 the following code spawned 6 R processes for parallel processing: require(foreach) require(doSNOW) cl = makeCluster(6, type='SOCK') registerDoSNOW(cl) bl2 = foreach(i=icount(length(unqmrno))) %dopar% { (Some code here) } stopCluster(cl) When I run the same code in R 2.11 Win64, the 6 R processes are not spawning, and the code hangs. I'm wondering if this is a problem with the port of SNOW to 2.11-64bit, or if any additional code is required on my part. Thanks

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  • Parallel computing for integrals

    - by Iman
    I want to reduce the calculation time for a time-consuming integral by splitting the integration range. I'm using C++, Windows, and a quad-core Intel i7 CPU. How can I split it into 4 parallel computations?

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  • running a parallel port controlling program through php.

    - by prateek
    I have a program that is interacting with hardware via parallel port programming. i had compiled it and using its object file to interact with the hardware (a simple led). when i execute it directly on the shell it serves the purpose of glowing the LED but when i execute it using shell_exec() in php the command is executed but unable to interact with the hardware. i am totally confused.. .

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  • Parallel programming in C#

    - by Alxandr
    I'm interested in learning about parallel programming in C#.NET (not like everything there is to know, but the basics and maybe some good-practices), therefore I've decided to reprogram an old program of mine which is called ImageSyncer. ImageSyncer is a really simple program, all it does is to scan trough a folder and find all files ending with .jpg, then it calculates the new position of the files based on the date they were taken (parsing of xif-data, or whatever it's called). After a location has been generated the program checks for any existing files at that location, and if one exist it looks at the last write-time of both the file to copy, and the file "in its way". If those are equal the file is skipped. If not a md5 checksum of both files is created and matched. If there is no match the file to be copied is given a new location to be copied to (for instance, if it was to be copied to "C:\test.jpg" it's copied to "C:\test(1).jpg" instead). The result of this operation is populated into a queue of a struct-type that contains two strings, the original file and the position to copy it to. Then that queue is iterated over untill it is empty and the files are copied. In other words there are 4 operations: 1. Scan directory for jpegs 2. Parse files for xif and generate copy-location 3. Check for file existence and if needed generate new path 4. Copy files And so I want to rewrite this program to make it paralell and be able to perform several of the operations at the same time, and I was wondering what the best way to achieve that would be. I've came up with two different models I can think of, but neither one of them might be any good at all. The first one is to parallelize the 4 steps of the old program, so that when step one is to be executed it's done on several threads, and when the entire of step 1 is finished step 2 is began. The other one (which I find more interesting because I have no idea of how to do that) is to create a sort of worker and consumer model, so when a thread is finished with step 1 another one takes over and performs step 2 at that object (or something like that). But as said, I don't know if any of these are any good solutions. Also, I don't know much about parallel programming at all. I know how to make a thread, and how to make it perform a function taking in an object as its only parameter, and I've also used the BackgroundWorker-class on one occasion, but I'm not that familiar with any of them. Any input would be appreciated.

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  • JRuby-friendly method for parallel-testing Rails app

    - by Toby Hede
    I am looking for a system to parallelise a large suite of tests in a Ruby on Rails app (using rspec, cucumber) that works using JRuby. Cucumber is actually not too bad, but the full rSpec suite currently takes nearly 20 minutes to run. The systems I can find (hydra, parallel-test) look like they use forking, which isn't the ideal solution for the JRuby environment.

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  • Unified Parallel C - examples and list of extensions

    - by osgx
    Hello Where can I find examples of code, written in "Unified Parallel C"? I also interested in normative documents about this language (standards, reference manuals, online-accessible books and courses). What extensions were added to C to get UPC? Is this dialect alive or dead?

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  • Using QTDesigner with PyQT and Python 2.6

    - by PyNewbie27
    Hi. I'm fairly new to Python and trying to work with the latest versions of QTDesigner, PyQT 4.7 and QT4.7 (I downloaded the whole package from PyQT4.7 website). I can't figure out how to make QTDesigner integrate closely with Python: ie. If I select "Form" View Code in QTDesigners menu, it errors saying "Unable to launch C:/Python26/Lib/site-packages/PyQT4/bin\uic." If I look in that directory there is a pyuic.py but not "uic". From searching online it seems this doesn't exist because it's expecting a C++ install instead of the python version. Is there anyway to make QTDesigner use/call pyuic.py to generate the code, then open an IDE or text editor of my choice to show me the PYTHON code generated by the QTDesigner-PyUIC chain? I'd like Designer to integrate closely with python, so I can make custom slots/signals in Designer while designing, then tweak the python code directly in my IDE later. If it is not possible to code directly inside QTDesigner using python, does that mean I have to hand code my programs entire UI directly in my PythonIDE? Using Designer directly would seemingly be nearly very very nice for a newbie such as myself, since I can see what properties each widget has and visually edit them while still learning the QT syntax without constantly having to use web resources to see what properties each widget should have and helps with boilerplate code generation, and what their defaults are, etc. I've googled and nobody seems to be using QTDesigner and Python in this manner together. It seems most are either handcoding all the QT code in their Python IDE of choice, or have found an obvious/easy method of doing what I want, therefore not really producing up to date tutorials on making this work together. Please enlighten me if you can. Thanks in advance for your time. Please include any suggestions you might have to a newbie trying to use Python with QT and QTDesigner. Thank you.

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  • Python Twitter library: which one?

    - by Parand
    I realize this is a bit of a lazyweb question, but I wanted to see which python library for Twitter people have had good experiences with. I've used Python Twitter Tools and like its brevity and beauty of interface, but it doesn't seem to be one of the popular ones - it's not even listed on the Twitter Libraries page. There are, however, plenty of others listed: oauth-python-twitter2 by Konpaku Kogasa. Combines python-twitter and oauth-python-twitter to create an evolved OAuth Pokemon. python-twitter by DeWitt Clinton. This library provides a pure Python interface for the Twitter API. python-twyt by Andrew Price. BSD licensed Twitter API interface library and command line client. twitty-twister by Dustin Sallings. A Twisted interface to Twitter. twython by Ryan McGrath. REST and Search library inspired by python-twitter. Tweepy by Josh Roesslein. Supports OAuth, Search API, Streaming API. My requirements are fairly simple: Be able to use OAuth Be able to follow a user Be able to send a direct message Be able to post Streaming API would be nice Twisted one aside (I'm not using twisted in this case), have you used any of the others, and if so, do you recommend them? [Update] FWIW, I ended up going with Python Twitter Tools again. The new version supported OAuth nicely, and it's a very clever API, so I stuck to it.

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  • Python read multiline JSON

    - by Paul W
    I have been trying to use JSON to store settings for a program. I can't seem to get Python 2.6 's JSON Decoder to decode multi-line JSON strings... Here is example input: .settings file: """ {\ 'user':'username',\ 'password':'passwd',\ }\ """ I have tried a couple other syntaxes for this file, which I will specify below (with the traceback they cause). My python code for reading the file in is import json settings_text = open(".settings", "r").read() settings = json.loads(settings_text) The Traceback for this is: Traceback (most recent call last): File "json_test.py", line 4, in <module> print json.loads(text) File "/System/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/json/__init__.py", line 307, in loads return _default_decoder.decode(s) File "/System/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/json/decoder.py", line 322, in decode raise ValueError(errmsg("Extra data", s, end, len(s))) ValueError: Extra data: line 1 column 2 - line 7 column 1 (char 2 - 41) I assume the "Extra data" is the triple-quote. Here are the other syntaxes I have tried for the .settings file, with their respective Tracebacks: "{\ 'user':'username',\ 'pass':'passwd'\ }" Traceback (most recent call last): File "json_test.py", line 4, in <module> print json.loads(text) File "/System/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/json/__init__.py", line 307, in loads return _default_decoder.decode(s) File "/System/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/json/decoder.py", line 319, in decode obj, end = self.raw_decode(s, idx=_w(s, 0).end()) File "/System/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/json/decoder.py", line 336, in raw_decode obj, end = self._scanner.iterscan(s, **kw).next() File "/System/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/json/scanner.py", line 55, in iterscan rval, next_pos = action(m, context) File "/System/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/json/decoder.py", line 155, in JSONString return scanstring(match.string, match.end(), encoding, strict) ValueError: Invalid \escape: line 1 column 2 (char 2) '{\ "user":"username",\ "pass":"passwd",\ }' Traceback (most recent call last): File "json_test.py", line 4, in <module> print json.loads(text) File "/System/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/json/__init__.py", line 307, in loads return _default_decoder.decode(s) File "/System/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/json/decoder.py", line 319, in decode obj, end = self.raw_decode(s, idx=_w(s, 0).end()) File "/System/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/json/decoder.py", line 338, in raw_decode raise ValueError("No JSON object could be decoded") ValueError: No JSON object could be decoded If I put the settings all on one line, it decodes fine.

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  • On Ubuntu, how do you install a newer version of python and keep the older python version?

    - by Trevor Boyd Smith
    Background: I am using Ubuntu The newer python version is not in the apt-get repository (or synaptic) I plan on keeping the old version as the default python when you call "python" from the command line I plan on calling the new python using pythonX.X (X.X is the new version). Given the background, how do you install a newer version of python and keep the older python version? I have downloaded from python.org the "install from source" *.tgz package. The readme is pretty simple and says "execute three commands: ./configure; make; make test; sudo make install;" If I do the above commands, will the installation overwrite the old version of python I have (I definitely need the old version)?

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  • Python import error: Symbol not found, but the symbol is present in the file

    - by Autopulated
    I get this error when I try to import ssrc.spread: ImportError: dlopen(/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/site-packages/ssrc/_spread.so, 2): Symbol not found: __ZN17ssrcspread_v1_0_67Mailbox11ZeroTimeoutE The file in question (_spread.so) includes the symbol: $ nm _spread.so | grep _ZN17ssrcspread_v1_0_67Mailbox11ZeroTimeoutE U __ZN17ssrcspread_v1_0_67Mailbox11ZeroTimeoutE U __ZN17ssrcspread_v1_0_67Mailbox11ZeroTimeoutE (twice because the file is a fat ppc/x86 binary) The archive header information of _spread.so is: $ otool -fahv _spread.so Fat headers fat_magic FAT_MAGIC nfat_arch 2 architecture ppc7400 cputype CPU_TYPE_POWERPC cpusubtype CPU_SUBTYPE_POWERPC_7400 capabilities 0x0 offset 4096 size 235272 align 2^12 (4096) architecture i386 cputype CPU_TYPE_I386 cpusubtype CPU_SUBTYPE_I386_ALL capabilities 0x0 offset 241664 size 229360 align 2^12 (4096) /Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/site-packages/ssrc/_spread.so (architecture ppc7400): Mach header magic cputype cpusubtype caps filetype ncmds sizeofcmds flags MH_MAGIC PPC ppc7400 0x00 BUNDLE 10 1420 NOUNDEFS DYLDLINK BINDATLOAD TWOLEVEL WEAK_DEFINES BINDS_TO_WEAK /Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/site-packages/ssrc/_spread.so (architecture i386): Mach header magic cputype cpusubtype caps filetype ncmds sizeofcmds flags MH_MAGIC I386 ALL 0x00 BUNDLE 11 1604 NOUNDEFS DYLDLINK BINDATLOAD TWOLEVEL WEAK_DEFINES BINDS_TO_WEAK And my python is python 2.6.4: $ which python | xargs otool -fahv Fat headers fat_magic FAT_MAGIC nfat_arch 2 architecture ppc cputype CPU_TYPE_POWERPC cpusubtype CPU_SUBTYPE_POWERPC_ALL capabilities 0x0 offset 4096 size 9648 align 2^12 (4096) architecture i386 cputype CPU_TYPE_I386 cpusubtype CPU_SUBTYPE_I386_ALL capabilities 0x0 offset 16384 size 13176 align 2^12 (4096) /Library/Frameworks/Python.framework/Versions/2.6/bin/python (architecture ppc): Mach header magic cputype cpusubtype caps filetype ncmds sizeofcmds flags MH_MAGIC PPC ALL 0x00 EXECUTE 11 1268 NOUNDEFS DYLDLINK TWOLEVEL /Library/Frameworks/Python.framework/Versions/2.6/bin/python (architecture i386): Mach header magic cputype cpusubtype caps filetype ncmds sizeofcmds flags MH_MAGIC I386 ALL 0x00 EXECUTE 11 1044 NOUNDEFS DYLDLINK TWOLEVEL There seems to be a difference in the ppc architecture in the files, but I'm running on an intel, so I don't see why this should cause a problem. So why might the symbol not be found?

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  • How to make python_select work for '$>python' command?

    - by Jim
    I installed a couple of pythons in different versions with macports, and the apple python 2.6 is also working. Now I need to run a program which requires MySQLdb package support in python, and this package was installed to the python I installed by macports. The program tells me that there is no MySQLdb installed, so I guess it is the apple python working for that program. I searched for some help and found python_select for switching between pythons. However after the command $>sudo python_select python25 told me that it selected the version "python25" for python, when I type $>python it is still apple python 2.6 that launches. The question is that how can I make python25(the one with MySQLdb) work for the program rather than apple python? Another important thing, the program is NOT a .py file and needs to be compiled before running. So do I need to re-install this program? My Mac OS version is Snow Leopard 10.6. Any answer is appreciated.

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  • How GAE emulator limits list of available Python modules?

    - by Konstantin
    I installed Python Mock module using PIP. When I try to import mock running under 'dev_appserver', GAE says that it can't find module 'mock'. import mock works perfectly in Python interpreter. I understand that dev_appserver behaves absolutely correctly because I can't install modules with PIP on GAE servers. My question is how technically dev_appserver filters list of modules that can be loaded?

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  • User Crontab + Python + Random wallpapers = Not working?

    - by Andrew Bolster
    I have a python script that correctly sets the desktop wallpaper via gconf to a random picture in a given folder. I then have the following entry in my crontab * * * * * python /home/bolster/bin/change-background.py And syslog correctly reports execution Apr 26 14:11:01 bolster-desktop CRON[9751]: (bolster) CMD (python /home/bolster/bin/change-background.py) Apr 26 14:12:01 bolster-desktop CRON[9836]: (bolster) CMD (python /home/bolster/bin/change-background.py) Apr 26 14:13:01 bolster-desktop CRON[9860]: (bolster) CMD (python /home/bolster/bin/change-background.py) Apr 26 14:14:01 bolster-desktop CRON[9905]: (bolster) CMD (python /home/bolster/bin/change-background.py) Apr 26 14:15:01 bolster-desktop CRON[9948]: (bolster) CMD (python /home/bolster/bin/change-background.py) Apr 26 14:16:01 bolster-desktop CRON[9983]: (bolster) CMD (python /home/bolster/bin/change-background.py) But no desktopy changey, Any ideas?

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