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  • Poor write performance on Debian server running NFS with 22TB exported JFS filesystem

    - by user143546
    I am currently running a debian server that is exporting a large JFS filesystem (22TB) over NFS (nfs-kernel-server.) When attempting to write to the NFS share, the performance is very poor. The 22TB disk is sitting on a NAS mounted using iSCSI. It will bust for a moment near expected line speed, and then sit idle for several seconds. Very little traffic measured in the low kb/sec. The wait peeks on write. When reading from the NFS mount, the system operates at expected speeds (11MB/sec). The issue does not occur when using SFTP, rsync, or local coping (non-nfs). The issue persists between stable and testing releases. On the same machine I have a 14TB ext4 filesystem using the exact same export configuration that does not share the issue. This share is not in regular use and thus not consuming resources. NFS Server: cat /etc/exports /data2 10.1.20.86(rw,no_subtree_check,async,all_squash) cat /sys/block/sdb/queue/scheduler noop [deadline] cfq cat /etc/default/nfs-kernel-server RPCNFSDCOUNT=8 RPCNFSDPRIORITY=0 RPCMOUNTDOPTS=--manage-gids NEED_SVCGSSD= RPCSVCGSSDOPTS= NFS Client: cat /etc/fstab 10.1.20.100:/data2 /root/incoming nfs rw,noatime,soft,intr,noacl 0 2 cat /sys/block/sdb/queue/scheduler noop [deadline] cfq cat /proc/mounts 10.1.20.100:/data2/ /root/incoming nfs4 rw,noatime,vers=4,rsize=262144,wsize=262144,namlen=255,soft,proto=tcp,port=0,timeo=600,retrans=2,sec=sys,clientaddr=10.1.20.86,minorversion=0,addr=10.1.20.100 0 0 This problem has me pretty stumped. Any help would be greatly welcomed. Thanks.

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  • disable specific PCI device at boot

    - by Rhymoid
    I've just reinstalled Debian on my Sony VAIO laptop, and my dmesg and virtual consoles all get spammed with the same messages over and over again. [ 59.662381] hub 1-1:1.0: unable to enumerate USB device on port 2 [ 59.901732] usb 1-1.2: new high-speed USB device number 91 using ehci_hcd [ 59.917940] hub 1-1:1.0: unable to enumerate USB device on port 2 [ 60.157256] usb 1-1.2: new high-speed USB device number 92 using ehci_hcd I believe these messages are coming from an internally connected USB device, most likely the webcam (since that's the only thing that doesn't work). The only way I can seem to have it shut up (without killing my actually useful USB ports) is to disable one of the USB host controllers: # echo "0000:00:1a.0" > /sys/bus/pci/drivers/ehci_hcd/unbind This also takes down my Bluetooth interface, but I'm fine with that. I would like this setting to persist, so that I can painlessly use my virtual console again in case I need it. I want my operating system (Debian amd64) to never wake it up, but I don't know how to do this. I've tried to blacklist the module alias for the PCI device, but it seems to be ignored: $ cat /sys/bus/pci/devices/0000\:00\:1a.0/modalias pci:v00008086d00003B3Csv0000104Dsd00009071bc0Csc03i20 $ cat /etc/modprobe.d/blacklist blacklist pci:v00008086d00003B3Csv0000104Dsd00009071bc0Csc03i20 How do I ensure that this specific PCI device is never automatically activated, without disabling its driver altogether? -edit- The module was renamed recently, now the following works from userland: echo "0000:00:1a.0" > /sys/bus/pci/drivers/ehci-pci/unbind Still, I'm looking for a way to stop the kernel from binding that device in the first place.

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  • Make eix available version match emerge

    - by Ryaner
    We have out Gentoo hosts using a binhost with EMERGE_DEFAULT_OPTS="--getbinpkgonly --usepkgonly" in the make.conf file so that the host only pulled down the binary hosts. All works well from that side. I use eix to check on software versions for upgrades but have hit a problem where eix will see an available version ahead of what is available on the binserver. Using glibc as an example ietpl [VE] / # emerge -s glibc Searching... [ Results for search key : glibc ] [ Applications found : 1 ] * sys-libs/glibc Latest version available: 2.14.1-r3 Latest version installed: 2.14.1-r3 Homepage: Description: GNU libc6 (also called glibc2) C library License: LGPL-2 Then eix reports a higher version available ietpl [VE] / # export LASTVERSION='{last}<version>{}' ietpl [VE] / # /usr/bin/eix --nocolor --format '<category> <name> [<installedversions:LASTVERSION>] [<bestversion:LASTVERSION>] \n' --exact --category-name sys-libs/glibc sys-libs glibc [2.14.1-r3] [2.15-r2] What I'm after is for eix to report the latest version available as 2.14.1-r3 like emerge. I've a feeling this is possible since without any formatting, eix returns Available versions: (2.2) ~2.9_p20081201-r3!s 2.10.1-r1!s 2.11.3!s ~2.12.1-r3!s 2.12.2!s{tbz2} ~2.13-r2!s 2.13-r4!s ~2.14!s ~2.14.1-r2!s 2.14.1-r3!s{tbz2} ~2.15-r1!s 2.15-r2!s ~2.15-r3!s **2.16.0!s **9999!s correctly tagging the latest unmasked binary package with {tbz2} I would have thought that the binary flag would do it, but that returns no matches --binary Match packages with *.tbz2 files.

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  • How to debug node.js applications

    - by Fabian Jakobs
    How do I debug a node.js server application? Right now I'm mostly using alert debugging with print statements like this: sys.puts(sys.inspect(someVariable)); There must be a better way to debug. I know that google Chrome has a command line debugger. Is this debugger available for node.js as well?

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  • Python OSError not reporting errors

    - by breathe
    Ive got this snippet that Im using to convert image files to tiff. I want to be informed when a file fails to convert. Imagemagick exits 0 when successfully run, so I figured the following snippet would report the issue. However no errors are being reported at all. def image(filePath,dirPath,fileUUID,shortFile): try: os.system("convert " + filePath + " +compress " + dirPath + "/" + shortFile + ".tif") except OSError, e: print sys.stderr, "image conversion failed: %s" % (e.errno, e.strerror) sys.exit(-1)

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  • Python: How to read huge text file into memory

    - by asmaier
    I'm using Python 2.6 on a Mac Mini with 1GB RAM. I want to read in a huge text file $ ls -l links.csv; file links.csv; tail links.csv -rw-r--r-- 1 user user 469904280 30 Nov 22:42 links.csv links.csv: ASCII text, with CRLF line terminators 4757187,59883 4757187,99822 4757187,66546 4757187,638452 4757187,4627959 4757187,312826 4757187,6143 4757187,6141 4757187,3081726 4757187,58197 So each line in the file consists of a tuple of two comma separated integer values. I want to read in the whole file and sort it according to the second column. I know, that I could do the sorting without reading the whole file into memory. But I thought for a file of 500MB I should still be able to do it in memory since I have 1GB available. However when I try to read in the file, Python seems to allocate a lot more memory than is needed by the file on disk. So even with 1GB of RAM I'm not able to read in the 500MB file into memory. My Python code for reading the file and printing some information about the memory consumption is: #!/usr/bin/python # -*- coding: utf-8 -*- import sys infile=open("links.csv", "r") edges=[] count=0 #count the total number of lines in the file for line in infile: count=count+1 total=count print "Total number of lines: ",total infile.seek(0) count=0 for line in infile: edge=tuple(map(int,line.strip().split(","))) edges.append(edge) count=count+1 # for every million lines print memory consumption if count%1000000==0: print "Position: ", edge print "Read ",float(count)/float(total)*100,"%." mem=sys.getsizeof(edges) for edge in edges: mem=mem+sys.getsizeof(edge) for node in edge: mem=mem+sys.getsizeof(node) print "Memory (Bytes): ", mem The output I got was: Total number of lines: 30609720 Position: (9745, 2994) Read 3.26693612356 %. Memory (Bytes): 64348736 Position: (38857, 103574) Read 6.53387224712 %. Memory (Bytes): 128816320 Position: (83609, 63498) Read 9.80080837067 %. Memory (Bytes): 192553000 Position: (139692, 1078610) Read 13.0677444942 %. Memory (Bytes): 257873392 Position: (205067, 153705) Read 16.3346806178 %. Memory (Bytes): 320107588 Position: (283371, 253064) Read 19.6016167413 %. Memory (Bytes): 385448716 Position: (354601, 377328) Read 22.8685528649 %. Memory (Bytes): 448629828 Position: (441109, 3024112) Read 26.1354889885 %. Memory (Bytes): 512208580 Already after reading only 25% of the 500MB file, Python consumes 500MB. So it seem that storing the content of the file as a list of tuples of ints is not very memory efficient. Is there a better way to do it, so that I can read in my 500MB file into my 1GB of memory?

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  • Problem with bootstrap loader and kernel

    - by dboarman-FissureStudios
    We are working on a project to learn how to write a kernel and learn the ins and outs. We have a bootstrap loader written and it appears to work. However we are having a problem with the kernel loading. I'll start with the first part: bootloader.asm: [BITS 16] [ORG 0x0000] ; ; all the stuff in between ; ; the bottom of the bootstrap loader datasector dw 0x0000 cluster dw 0x0000 ImageName db "KERNEL SYS" msgLoading db 0x0D, 0x0A, "Loading Kernel Shell", 0x0D, 0x0A, 0x00 msgCRLF db 0x0D, 0x0A, 0x00 msgProgress db ".", 0x00 msgFailure db 0x0D, 0x0A, "ERROR : Press key to reboot", 0x00 TIMES 510-($-$$) DB 0 DW 0xAA55 ;************************************************************************* The bootloader.asm is too long for the editor without causing it to chug and choke. In addition, the bootloader and kernel do work within bochs as we do get the message "Welcome to our OS". Anyway, the following is what we have for a kernel at this point. kernel.asm: [BITS 16] [ORG 0x0000] [SEGMENT .text] ; code segment mov ax, 0x0100 ; location where kernel is loaded mov ds, ax mov es, ax cli mov ss, ax ; stack segment mov sp, 0xFFFF ; stack pointer at 64k limit sti mov si, strWelcomeMsg ; load message call _disp_str mov ah, 0x00 int 0x16 ; interrupt: await keypress int 0x19 ; interrupt: reboot _disp_str: lodsb ; load next character or al, al ; test for NUL character jz .DONE mov ah, 0x0E ; BIOS teletype mov bh, 0x00 ; display page 0 mov bl, 0x07 ; text attribute int 0x10 ; interrupt: invoke BIOS jmp _disp_str .DONE: ret [SEGMENT .data] ; initialized data segment strWelcomeMsg db "Welcome to our OS", 0x00 [SEGMENT .bss] ; uninitialized data segment Using nasm 2.06rc2 I compile as such: nasm bootloader.asm -o bootloader.bin -f bin nasm kernel.asm -o kernel.sys -f bin We write bootloader.bin to the floppy as such: dd if=bootloader.bin bs=512 count=1 of/dev/fd0 We write kernel.sys to the floppy as such: cp kernel.sys /dev/fd0 As I stated, this works in bochs. But booting from the floppy we get output like so: Loading Kernel Shell ........... ERROR : Press key to reboot Other specifics: OpenSUSE 11.2, GNOME desktop, AMD x64 Any other information I may have missed, feel free to ask. I tried to get everything in here that would be needed. If I need to, I can find a way to get the entire bootloader.asm posted somewhere. We are not really interested in using GRUB either for several reasons. This could change, but we want to see this boot successful before we really consider GRUB.

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  • Why is mod_wsgi not able to write data? IOError: failed to write data

    - by BryanWheelock
    What could be causing this error: $ sudo tail -n 100 /var/log/apache2/error.log' [Wed Dec 29 15:20:03 2010] [error] [client 220.181.108.181] mod_wsgi (pid=20343): Exception occurred processing WSGI script '/home/username/public_html/idm.wsgi'. [Wed Dec 29 15:20:03 2010] [error] [client 220.181.108.181] IOError: failed to write data Here is the WSGI script: $ cat public_html/idm.wsgi import os import sys sys.path.append('/home/username/public_html/IDM_app/') os.environ['DJANGO_SETTINGS_MODULE'] = 'settings' import django.core.handlers.wsgi application = django.core.handlers.wsgi.WSGIHandler() Why would Django not be able to write data? I'm running Django 1.2.4

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  • gcc precompiled headers weird behaviour with -c option

    - by pachanga
    Folks, I'm using gcc-4.4.1 on Linux and before trying precompiled headers in a really large project I decided to test them on simple program. They "kinda work" but I'm not happy with results and I'm sure there is something wrong about my setup. First of all, I wrote a simple program(main.cpp) to test if they work at all: #include <boost/bind.hpp> #include <boost/function.hpp> #include <boost/type_traits.hpp> int main() { return 0; } Then I created the precompiled headers file pre.h(in the same directory) as follows: #include <boost/bind.hpp> #include <boost/function.hpp> #include <boost/type_traits.hpp> ...and compiled it: $ g++ -I. pre.h (pre.h.gch was created) After that I measured compile time with and without precompiled headers: with pch $ time g++ -I. -include pre.h main.cpp real 0m0.128s user 0m0.088s sys 0m0.048s without pch $ time g++ -I. main.cpp real 0m0.838s user 0m0.784s sys 0m0.056s So far so good! Almost 7 times faster, that's impressive! Now let's try something more realistic. All my sources are built with -c option and for some reason I can't make pch play nicely with it. You can reproduce this with the following steps below... I created the test module foo.cpp as follows: #include <boost/bind.hpp> #include <boost/function.hpp> #include <boost/type_traits.hpp> int whatever() { return 0; } Here are the timings of my attempts to build the module foo.cpp with and without pch: with pch $ time g++ -I. -include pre.h -c foo.cpp real 0m0.357s user 0m0.348s sys 0m0.012s without pch $ time g++ -I. -c foo.cpp real 0m0.330s user 0m0.292s sys 0m0.044s That's quite strange, looks like there is no speed up at all!(I ran timings for several times). It turned out precompiled headers were not used at all in this case, I checked it with -H option(output of "g++ -I. -include pre.h -c foo.cpp -H" didn't list pre.h.gch at all). What am I doing wrong?

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  • Usb Driver on 64bit Windows

    - by SurDin
    I have a pretty generic 64bit driver based on bulkusb.sys in WDK. It's been working for years with an embedded program, but now it is needed to work on Vista 64. From all the documentation I've tried to look through there doesn't seem to be anything affecting it, except compiling it for the 64bit environment, and yet when I compile it with the AMD64 build environment, I get "driver not intended for this platform" error message when it's trying to open the sys. What could be the solution for this?

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  • SQL Server Indexing

    - by durilai
    I am trying to understand what is going on with CREATE INDEX internally. When I create a NONCLUSTERED index it shows as an INSERT in the execution plan as well as when I get the query test. DECLARE @sqltext VARBINARY(128) SELECT @sqltext = sql_handle FROM sys.sysprocesses s WHERE spid = 73 --73 is the process creating the index SELECT TEXT FROM sys.dm_exec_sql_text(@sqltext) GO Show: insert [dbo].[tbl] select * from [dbo].[tbl] option (maxdop 1) This is consistent in the execution plan. Any info is appreciated.

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  • Two way binding settings problem.

    - by Jamie
    Hi, I am having a problem using two way binding with a listpicker. I am able to set the value using c# but not in the SelectedItem=".." in xaml. The binding is returning the correct value (and is a value in the listpicker) as i have texted it by assigning the text to a textblock. When the page loads, the binding used on the listpicker causes a System.ArgumentOutOfRangeException The code i am using to set it is: // Update a setting value. If the setting does not exist, add the setting. public bool AddOrUpdateValue(string key, Object value) { bool valueChanged = false; try { // If new value is different, set the new value if (settingsStorage[key] != value) { settingsStorage[key] = value; valueChanged = true; } } catch (KeyNotFoundException) { settingsStorage.Add(key, value); valueChanged = true; } catch (ArgumentException) { settingsStorage.Add(key, value); valueChanged = true; } catch (Exception e) { Console.WriteLine("Exception occured whilst using IsolatedStorageSettings: " + e.ToString()); } return valueChanged; } // Get the current value of the setting, if not found, set the setting to default value. public valueType GetValueOrDefault<valueType>(string key, valueType defaultValue) { valueType value; try { value = (valueType)settingsStorage[key]; } catch (KeyNotFoundException) { value = defaultValue; } catch (ArgumentException) { value = defaultValue; } return value; } public string WeekBeginsSetting { get { return GetValueOrDefault<string>(WeekBeginsSettingKeyName, WeekBeginsSettingDefault); } set { AddOrUpdateValue(WeekBeginsSettingKeyName, value); Save(); } } And in the xaml: <toolkit:ListPicker x:Name="WeekStartDay" Header="Week begins on" SelectedItem="{Binding Source={StaticResource AppSettings}, Path=WeekBeginsSetting, Mode=TwoWay}"> <sys:String>monday</sys:String> <sys:String>sunday</sys:String> </toolkit:ListPicker> The StaticResource AppSettings is a resource from a seperate .cs file. <phone:PhoneApplicationPage.Resources> <local:ApplicationSettings x:Key="AppSettings"></local:ApplicationSettings> </phone:PhoneApplicationPage.Resources> Thanks in advance

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  • How to get parameter values for dm_exec_sql_text

    - by Ted Elliott
    I'm running the following statement to see what queries are executing in sql server: select * from sys.dm_exec_requests r cross apply sys.dm_exec_sql_text(r.sql_handle) where r.database_id = DB_ID('<dbname>') The sql text that comes back is parameterized: (@Parm0 int) select * from foo where foo_id = @Parm0 Is there any way to get the values for the parameters that the statement is using? Say by joining to another table perhaps?

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  • how to import the parent model on gae-python

    - by zjm1126
    main:. +-a ¦ +-__init__.py ¦ +-aa.py +-b ¦ +-__init__.py ¦ +-bb.py +-cc.py if i am in aa.py , how to import cc.py ? this is my code ,but it is error : from main import cc what should i do . thanks updated in normal python file (not on gae),i can use this code : import os,sys dirname=os.path.dirname path=os.path.join(dirname(dirname(__file__))) sys.path.insert(0,path) import cc print cc.c but on gae , it show error : ImportError: No module named cc

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  • how to import a 'zip' file to my .py ..

    - by zjm1126
    when i use http://github.com/joshthecoder/tweepy-examples , i find : import tweepy in the appengine\oauth_example\handlers.py but i can't find a tweepy file or tweepy's 'py' file, except a tweepy.zip file, i don't think this is right,cauz i never import a zip file, i find this in app.py: import sys sys.path.insert(0, 'tweepy.zip') why ? how to import a zip file.. thanks

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  • How to flush the input stream in python?

    - by jinxed_coder
    I'm writing a simple alarm utility in Python. #!/usr/bin/python import time import subprocess import sys alarm1 = int(raw_input("How many minutes (alarm1)? ")) while (1): time.sleep(60*alarm1) print "Alarm1" sys.stdout.flush(); doit = raw_input("Continue (Y/N)?[Y]: ") print "Input",doit if doit == 'N' or doit=='n': print "Exiting....." break I want to flush or discard all the key strokes that were entered while the script was sleeping and only accept the key strokes after the raw_input() is executed.

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  • dynamic module creation

    - by intuited
    I'd like to dynamically create a module from a dictionary, and I'm wondering if adding an element to sys.modules is really the best way to do this. EG context = { a: 1, b: 2 } import types test_context_module = types.ModuleType('TestContext', 'Module created to provide a context for tests') test_context_module.__dict__.update(context) import sys sys.modules['TestContext'] = test_context_module My immediate goal in this regard is to be able to provide a context for timing test execution: import timeit timeit.Timer('a + b', 'from TestContext import *') It seems that there are other ways to do this, since the Timer constructor takes objects as well as strings. I'm still interested in learning how to do this though, since a) it has other potential applications; and b) I'm not sure exactly how to use objects with the Timer constructor; doing so may prove to be less appropriate than this approach in some circumstances. EDITS/REVELATIONS/PHOOEYS/EUREKAE: I've realized that the example code relating to running timing tests won't actually work, because import * only works at the module level, and the context in which that statement is executed is that of a function in the testit module. In other words, the globals dictionary used when executing that code is that of main, since that's where I was when I wrote the code in the interactive shell. So that rationale for figuring this out is a bit botched, but it's still a valid question. I've discovered that the code run in the first set of examples has the undesirable effect that the namespace in which the newly created module's code executes is that of the module in which it was declared, not its own module. This is like way weird, and could lead to all sorts of unexpected rattlesnakeic sketchiness. So I'm pretty sure that this is not how this sort of thing is meant to be done, if it is in fact something that the Guido doth shine upon. The similar-but-subtly-different case of dynamically loading a module from a file that is not in python's include path is quite easily accomplished using imp.load_source('NewModuleName', 'path/to/module/module_to_load.py'). This does load the module into sys.modules. However this doesn't really answer my question, because really, what if you're running python on an embedded platform with no filesystem? I'm battling a considerable case of information overload at the moment, so I could be mistaken, but there doesn't seem to be anything in the imp module that's capable of this. But the question, essentially, at this point is how to set the global (ie module) context for an object. Maybe I should ask that more specifically? And at a larger scope, how to get Python to do this while shoehorning objects into a given module?

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  • Can anyone tell me why these lines are not working?

    - by user343934
    I am trying to generate tree with fasta file input and Alignment with MuscleCommandline import sys,os, subprocess from Bio import AlignIO from Bio.Align.Applications import MuscleCommandline cline = MuscleCommandline(input="c:\Python26\opuntia.fasta") child= subprocess.Popen(str(cline), stdout = subprocess.PIPE, stderr=subprocess.PIPE, shell=(sys.platform!="win32")) align=AlignIO.read(child.stdout,"fasta") outfile=open('c:\Python26\opuntia.phy','w') AlignIO.write([align],outfile,'phylip') outfile.close() I always encounter with these problems Traceback (most recent call last): File "", line 244, in run_nodebug File "C:\Python26\muscleIO.py", line 11, in align=AlignIO.read(child.stdout,"fasta") File "C:\Python26\Lib\site-packages\Bio\AlignIO_init_.py", line 423, in read raise ValueError("No records found in handle") ValueError: No records found in handle

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  • Windows is not passing command line arguments to Python programs executed from the shell.

    - by mckoss
    I'm having trouble getting command line arguments passed to Python programs if I try to execute them directly as executable commands from a Windows command shell. For example, if I have this program (test.py): import sys print "Args: %r" % sys.argv[1:] And execute: >test foo Args: [] as compared to: >python test.py foo Args: ['foo'] My configuration has: PATH=...;C:\python25;... PATHEXT=...;.PY;.... >assoc .py .py=Python.File >ftype | grep Python Python.CompiledFile="C:\Python25\python.exe" "%1" %* Python.File="C:\Python25\python.exe" "%1" %* Python.NoConFile="C:\Python25\pythonw.exe" "%1" %*

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  • importing classes python

    - by Richard
    Just wondering why import sys exit(0) gives me this error: Traceback (most recent call last): File "<pyshell#1>", line 1, in ? exit(0) TypeError: 'str' object is not callable but from sys import exit exit(0) works fine?

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  • Type is undefined MVC AJAX Script

    - by zsharp
    on one page of my app i get a Type is undefined on the ajax script. why would this be? EDIT Type is not defined MicrosoftMvcAjax.js()()Microsof...vcAjax.js (line 6) [Break on this error] Type.registerNamespace('Sys.Mvc');Sys.Mv...reate_AjaxOptions=function(){return {};}

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