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• Why is Adobe Flash Player downloaded as a ".dmg.mdlp" file?

  - by dpddt

  When I download the current Adobe flash player installer from the Adobe website using Safari 6.0.1 under OSX 10.8.2, I end up with a file named 'install_flash_player_osx.dmg.mdlp' in my downloads folder. I am curious as to why the .mdlp extension is being added to the disk image containing the flash player installer, which has always terminated with the .dmg extension in the past. The only program which uses the .mdlp extension that I am aware of is matlab; matlab is installed on this machine and it is the program the OS would like to use to open the file. I have not seen OSX, or any component thereof, replace or append file extensions in the past and I am able to download .dmg files from other websites without this phenomenon occurring. Note that I am not interested in suggestions regarding the opening of the file, but rather an explanation as to why the .mdlp extension is being applied in the first place, whether it be by the local machine or Adobe.

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• matplotlib.pyplot/pylab not updating figure while isinteractive(), using ipython -pylab

  - by NumberOverZero

  There are a lot of questions about matplotlib, pylab, pyplot, ipython, so I'm sorry if you're sick of seeing this asked. I'll try to be as specific as I can, because I've been looking through people's questions and looking at documentation for pyplot and pylab, and I still am not sure what I'm doing wrong. On with the code: Goal: plot a figure every .5 seconds, and update the figure as soon as the plot command is called. My attempt at coding this follows (running on ipython -pylab): import time ion() x=linspace(-1,1,51) plot(sin(x)) for i in range(10): plot([sin(i+j) for j in x]) #see ** print i time.sleep(1) print 'Done' It correctly plots each line, but not until it has exited the for loop. I have tried forcing a redraw by putting draw() where ** is, but that doesn't seem to work either. Ideally, I'd like to have it simply add each line, instead of doing a full redraw. If redrawing is required however, that's fine. Additional attempts at solving: just after ion(), tried adding hold(True) to no avail. for kicks tried show() for ** The closest answer I've found to what I'm trying to do was at http://stackoverflow.com/questions/2310851/plotting-lines-without-blocking-execution, but show() isn't doing anything. I apologize if this is a straightforward request, and I'm looking past something so obvious. For what it's worth, this came up while I was trying to convert matlab code from class to some python for my own use. The original matlab (initializations removed) which I have been trying to convert follows: for i=1:time plot(u) hold on pause(.01) for j=2:n-1 v(j)=u(j)-2*u(j-1) end v(1)= pi u=v end Any help, even if it's just "look up this_method" would be excellent, so I can at least narrow my efforts to figuring out how to use that method. If there's any more information that would be useful, let me know.

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• GUI frontend for octave on Linux

  - by Homunculus Reticulli

  I recently installed Octave on my Ubuntu 10.0.4 LTS box. Out of the box, this is a console only app. This makes the learning curve a bit steeper than what I would like it to be, and I am looking for a GUI frontend that looks more like Matlab. I have seen a few project (QtOctave etc), but most of them seem either discontinued, no longer under active development, or are no longer free. Can anyone recommend a good open source/free GUI for Octave on Linux? Preferably, one that is as close as possible to Matlab's GUI.

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• remove utf-8 figure spaces with php

  - by Jeroen Beerstra

  I have some xml files with figure spaces in it, I need to remove those with php. The utf-8 code for these is e2 80 a9. If I'm not mistaken php does not seem to like 6 byte utf-8 chars, so far at least I'm unable to find a way to delete the figure spaces with functions like preg_replace. Anybody any tips or even better a solution to this problem?

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• multiple figure in latex with captions.

  - by asd

  Hi, How can I insert multiple figures each of them has a caption and label, without using minipage. I wrote this code, but just there is one caption :( \begin{figure}[htp] \centering \label{figur}\caption{equation...} \begin{tabular}{cc} % Requires \usepackage{graphicx} \includegraphics[width=60mm]{explicit3185.eps}& \includegraphics[width=60mm]{explicit3183.eps}\\ \includegraphics[width=60mm]{explicit1501.eps}& \includegraphics[width=60mm]{explicit23185.eps}\\ \includegraphics[width=60mm]{explicit23183.eps}& \includegraphics[width=60mm]{explicit21501.eps}\\ \end{tabular} \end{figure}

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• How to store generated eigen faces for future face recognition?

  - by user3237134

  My code works in the following manner: 1.First, it obtains several images from the training set 2.After loading these images, we find the normalized faces,mean face and perform several calculation. 3.Next, we ask for the name of an image we want to recognize 4.We then project the input image into the eigenspace, and based on the difference from the eigenfaces we make a decision. 5.Depending on eigen weight vector for each input image we make clusters using kmeans command. Source code i tried: clear all close all clc % number of images on your training set. M=1200; %Chosen std and mean. %It can be any number that it is close to the std and mean of most of the images. um=60; ustd=32; %read and show images(bmp); S=[]; %img matrix for i=1:M str=strcat(int2str(i),'.jpg'); %concatenates two strings that form the name of the image eval('img=imread(str);'); [irow icol d]=size(img); % get the number of rows (N1) and columns (N2) temp=reshape(permute(img,[2,1,3]),[irow*icol,d]); %creates a (N1*N2)x1 matrix S=[S temp]; %X is a N1*N2xM matrix after finishing the sequence %this is our S end %Here we change the mean and std of all images. We normalize all images. %This is done to reduce the error due to lighting conditions. for i=1:size(S,2) temp=double(S(:,i)); m=mean(temp); st=std(temp); S(:,i)=(temp-m)*ustd/st+um; end %show normalized images for i=1:M str=strcat(int2str(i),'.jpg'); img=reshape(S(:,i),icol,irow); img=img'; end %mean image; m=mean(S,2); %obtains the mean of each row instead of each column tmimg=uint8(m); %converts to unsigned 8-bit integer. Values range from 0 to 255 img=reshape(tmimg,icol,irow); %takes the N1*N2x1 vector and creates a N2xN1 matrix img=img'; %creates a N1xN2 matrix by transposing the image. % Change image for manipulation dbx=[]; % A matrix for i=1:M temp=double(S(:,i)); dbx=[dbx temp]; end %Covariance matrix C=A'A, L=AA' A=dbx'; L=A*A'; % vv are the eigenvector for L % dd are the eigenvalue for both L=dbx'*dbx and C=dbx*dbx'; [vv dd]=eig(L); % Sort and eliminate those whose eigenvalue is zero v=[]; d=[]; for i=1:size(vv,2) if(dd(i,i)>1e-4) v=[v vv(:,i)]; d=[d dd(i,i)]; end end %sort, will return an ascending sequence [B index]=sort(d); ind=zeros(size(index)); dtemp=zeros(size(index)); vtemp=zeros(size(v)); len=length(index); for i=1:len dtemp(i)=B(len+1-i); ind(i)=len+1-index(i); vtemp(:,ind(i))=v(:,i); end d=dtemp; v=vtemp; %Normalization of eigenvectors for i=1:size(v,2) %access each column kk=v(:,i); temp=sqrt(sum(kk.^2)); v(:,i)=v(:,i)./temp; end %Eigenvectors of C matrix u=[]; for i=1:size(v,2) temp=sqrt(d(i)); u=[u (dbx*v(:,i))./temp]; end %Normalization of eigenvectors for i=1:size(u,2) kk=u(:,i); temp=sqrt(sum(kk.^2)); u(:,i)=u(:,i)./temp; end % show eigenfaces; for i=1:size(u,2) img=reshape(u(:,i),icol,irow); img=img'; img=histeq(img,255); end % Find the weight of each face in the training set. omega = []; for h=1:size(dbx,2) WW=[]; for i=1:size(u,2) t = u(:,i)'; WeightOfImage = dot(t,dbx(:,h)'); WW = [WW; WeightOfImage]; end omega = [omega WW]; end % Acquire new image % Note: the input image must have a bmp or jpg extension. % It should have the same size as the ones in your training set. % It should be placed on your desktop ed_min=[]; srcFiles = dir('G:\newdatabase\*.jpg'); % the folder in which ur images exists for b = 1 : length(srcFiles) filename = strcat('G:\newdatabase\',srcFiles(b).name); Imgdata = imread(filename); InputImage=Imgdata; InImage=reshape(permute((double(InputImage)),[2,1,3]),[irow*icol,1]); temp=InImage; me=mean(temp); st=std(temp); temp=(temp-me)*ustd/st+um; NormImage = temp; Difference = temp-m; p = []; aa=size(u,2); for i = 1:aa pare = dot(NormImage,u(:,i)); p = [p; pare]; end InImWeight = []; for i=1:size(u,2) t = u(:,i)'; WeightOfInputImage = dot(t,Difference'); InImWeight = [InImWeight; WeightOfInputImage]; end noe=numel(InImWeight); % Find Euclidean distance e=[]; for i=1:size(omega,2) q = omega(:,i); DiffWeight = InImWeight-q; mag = norm(DiffWeight); e = [e mag]; end ed_min=[ed_min MinimumValue]; theta=6.0e+03; %disp(e) z(b,:)=InImWeight; end IDX = kmeans(z,5); clustercount=accumarray(IDX, ones(size(IDX))); disp(clustercount); QUESTIONS: 1.It is working fine for M=50(i.e Training set contains 50 images) but not for M=1200(i.e Training set contains 1200 images).It is not showing any error.There is no output.I waited for 10 min still there is no output. I think it is going infinite loop.What is the problem?Where i was wrong? 2.Instead of running the training set everytime how eigen faces generated are stored so that stored eigen faces are used for future face recoginition for a new input image.So it reduces wastage of time.

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• Increasing figure size in Matplotlib

  - by Anirudh

  I am trying to plot a graph from a distance matrix. The code words fine and gives me a image in 800 * 600 pixels. The image being too small, All the nodes are packed together. I want increase the size of the image. so I added the following line to my code - figure(num=None, figsize=(10, 10), dpi=80, facecolor='w', edgecolor='k') After this all I get is a blank 1000 * 1000 image file. My overall code - import networkx as nx import pickle import matplotlib.pyplot as plt print "Reading from pickle." p_file = open('pickles/names') Names = pickle.load(p_file) p_file.close() p_file = open('pickles/distance') Dist = pickle.load(p_file) p_file.close() G = nx.Graph() print "Inserting Nodes." for n in Names: G.add_node(n) print "Inserting Edges." for i in range(601): for j in range(601): G.add_edge(Names[i],Names[j],weight=Dist[i][j]) print "Drawing Graph." nx.draw(G) print "Saving Figure." #plt.figure(num=None, figsize=(10, 10)) plt.savefig('new.png') print "Success!"

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• How to setup matlabpool for multiple processors?

  - by JohnIdol

  I just setup a Extra Large Heavy Computation EC2 instance to throw it at my Genetic Algorithms problem, hoping to speed up things. This instance has 8 Intel Xeon processors (around 2.4Ghz each) and 7 Gigs of RAM. On my machine I have an Intel Core Duo, and matlab is able to work with my two cores just fine by runinng: matlabpool open 2 On the EC2 instance though, matlab only is capable of detecting 1 out of 8 processors, and if I try running: matlabpool open 8 I get an error saying that the ClusterSize is 1 since there's only 1 core on my CPU. True, there is only 1 core on each CPU, but I have 8 CPUs on the given EC2 instance! So the difference from my machine and the ec2 instance is that I have my 2 cores on a single processor locally, while the EC2 instance has 8 distinct processors. My question is, how do I get matlab to work with those 8 processors? I found this paper, but it seems related to setting up matlab with multiple EC2 instances (not related to multiple processors on the same instance, EC2 or not), which is not my problem. Any help appreciated!

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• Parallelizing for loop

  - by vman049

  I have MATLAB code which I'm trying to parallelize with a simple change from "for" to "parfor." I'm unable to do so because of an error I'm receiving on the variable "votes" which states: Valid indices for 'votes' are restricted in PARFOR loops. Explanation: For MATLAB to execute parfor loops efficiently, the amount of data sent to the MATLAB workers must be minimal. One of the ways MATLAB achieves this is by restricting the way variables can be indexed in parfor iterations. The indicated variable is indexed in a way that is incompatible with parfor. Suggested Action: Fix the indexing. For a description of the indexing restrictions, see “Sliced Variables” in the Parallel Computing Toolbox documentation. Below is my code: votes = zeros(num_layers, size(spikes, 1), size(SVMs_layer1, 1)); predDir = zeros(size(spikes, 1), 1); chronProb = zeros([num_layers, size(chronDists)]); for i = 1:num_layers switch i case 1 B = B1; k_elem_temp = k_elem1; rest_elem_temp = rest_elem1; case 2 B = B2; k_elem_temp = k_elem2; rest_elem_temp = rest_elem2; case 3 B = B3; k_elem_temp = k_elem3; rest_elem_temp = rest_elem3; end for j = 1:length(chronPred) if chronDists(i, j, :) ~= 0 parfor k = 1:8 chronProb(i, j, k) = logistic(B{k}(1) + chronDists(i, j, k).*(B{k}(2))); votes(i, j, k_elem_temp(k, :)) = votes(i, j, k_elem_temp(k, :)) + chronProb(i, j, k)/num_k(i)/num_layers; votes(i, j, rest_elem_temp(k, :)) = votes(i, j, rest_elem_temp(k, :)) + (1 - chronProb(i, j, k))/num_rest(i)/num_layers; end end end end Do you have any suggestions as to how I could adjust my code so that it runs in parallel? Thank you!

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• Poor home office network performance and cannot figure out where the issue is

  - by Jeff Willener

  This is the most bizarre issue. I have worked with small to mid size networks for quite a long time and can say I'm comfortable connecting hardware. Where you will start to lose me is with managed switches and firewalls. To start, let me describe my network (sigh, shouldn't but I MUST solve this). 1) Comcast Cable Internet 2) Motorola SURFboard eXtreme Cable Modem. a) Model: SB6120 b) DOCSIS 3.0 and 2.0 support c) IPv4 and IPv6 support 3-A) Cisco Small Business RV220W Wireless N Firewall a) Latest firmware b) Model: RV220W-A-K9-NA c) WAN Port to Modem (2) d) vlan 1: work e) vlan 2: everything else. 3-B) D-Link DIR-615 Draft 802.11 N Wireless Router a) Latest firmware b) WAN Port to Modem (2) 4) Servers connected directly to firewall a) If firewall 3-A, then vlan 1 b) CAT5e patch cables c) Dell PowerEdge 1400SC w/ 10/100 integrated NIC (Domain Controller, DNS, former DHCP) d) Dell PowerEdge 400SC w/ 10/100/1000 integrated NIC (VMWare Server) 4) Linksys EZXS88W unmanaged Workgroup 10/100 Switch a) If firewall 3-A, then vlan 2 b) 25' CAT5e patch cable to firewall (3-A or 3-B) c) Connects xBox 360, Blu-Ray player, PC at TV 5) Office equipment connected directly to firewall a) If firewall 3-A, then vlan 1 b) ~80' CAT6 or CAT5e patch cable to firewall (3-A or 3-B) c) Connects 1) Dell Latitude laptop 10/100/1000 2) Dell Inspiron laptop 10/100 3) Dell Workstation 10/100/1000 (Pristine host, VMWare Workstation 7.x with many bridged VM's) 4) Brother Laser Printer 10/100 5) Epson All-In-One Workforce 310 10/100 5-A) NetGear FS116 unmanaged 10/100 switch a) I've had this switch for a long time and never had issues. 5-B) NetGear GS108 unmanaged 10/100/1000 switch a) Bought new for this issue and returned. 5-C) Linksys SE2500 unmanaged 10/100/1000 switch a) Bought new for this issue and returned. 5-D) TP-Link TL-SG10008D unmanaged 10/100/1000 a) Bought new for this issue and still have. 6) VLan 1 Wireless Connections (on same subnet if 3-B) a) Any of those at 5c b) HP Laptop 7) VLan 2 Wireless Connection (on same subnet if 3-B) a) IPad, IPod b) Compaq Laptop c) Epson Wireless Printer Shew, without hosting a diagram I hope that paints a good picture. The Issue The breakdown here is at item 5. No matter what I do I cannot have a switch at 5 and have to run everything wireless regardless of router. Issues related to using a switch (point 5 above) SpeedTest is good. Poor throughput to other devices if can communicate at all. Usually cannot ping other devices even on the same switch although, when able, ping times are good. Eventual lose of connectivity and can "sometimes" be restored by unplugging everything for several days, not minutes or hours but we're talking a week if at all. Directly connect to computer gives good internet connection however throughput to other devices connected to firewall is at best horrible. Yet printing doesn't seem to be an issue as long as they are connected via wireless. I have to force the RV220W to 1000Mb on the respective port if using a Gig Switch Issues related to using wireless in place of a switch (point 5 above) Poor throughput to other devices if can communicate. SpeedTest is good. Bottom line Internet speeds are awesome. By the way, Comcast went WAY above and beyond to make sure it was not them. They rewired EVERYTHING which did solve internet drops. Computer to computer connections are garbage Cannot get switch at 5 to work, yet other at 4 has never had an issue. Direct connection, bypass switch, is good for DHCP and internet. DNS must be on server, not firewall. Cisco insists its my switches but as you can see I have used four and two different cables with the same result. My gut feeling is something is happening with routing. But I'm not smart enough to know that answer. I run a lot of VM's at 5-c-3, could that cause it? What's different compared to my previous house is I have introduced Gigabit hardware (firewall/switches/computers). Some of my computers might have IPv6 turned on if I haven't turned it off already. I'm truly at a loss and hope anyone has some crazy idea how to solve this. Bottom line, I need a switch in my office behind the firewall. I've changed everything. The real crux is I will find a working solution and, again, after days it will stop working. So this means I cannot isolate if its a computer since I have to use them. Oh and a solution is not throwing more money at this. I'm well into $1k already. Yah, lame.

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• High Server Load cannot figure out why

  - by Tim Bolton

  My server is currently running CentOS 5.2, with WHM 11.34. Currently, we're at 6.43 to 12 for a load average. The sites that we're hosting are taking a lot time to respond and resolve. top doesn't show anything out of the ordinary and iftop doesn't show a lot of traffic. We have many resellers, and some not so good at writing code, how can we find the culprit? vmstat output: vmstat procs -----------memory---------- ---swap-- -----io---- --system-- -----cpu------ r b swpd free buff cache si so bi bo in cs us sy id wa st 0 2 84 78684 154916 1021080 0 0 72 274 0 14 6 3 80 12 0 top output (ordered by %CPU) top - 21:44:43 up 5 days, 10:39, 3 users, load average: 3.36, 4.18, 4.73 Tasks: 222 total, 3 running, 219 sleeping, 0 stopped, 0 zombie Cpu(s): 5.8%us, 2.3%sy, 0.2%ni, 79.6%id, 11.8%wa, 0.0%hi, 0.2%si, 0.0%st Mem: 2074580k total, 1863044k used, 211536k free, 174828k buffers Swap: 2040212k total, 84k used, 2040128k free, 987604k cached PID USER PR NI VIRT RES SHR S %CPU %MEM TIME+ COMMAND 15930 mysql 15 0 138m 46m 4380 S 4 2.3 1:45.87 mysqld 21772 igniteth 17 0 23200 7152 3932 R 4 0.3 0:00.02 php 1586 root 10 -5 0 0 0 S 2 0.0 11:45.19 kjournald 21759 root 15 0 2416 1024 732 R 2 0.0 0:00.01 top 1 root 15 0 2156 648 560 S 0 0.0 0:26.31 init 2 root RT 0 0 0 0 S 0 0.0 0:00.35 migration/0 3 root 34 19 0 0 0 S 0 0.0 0:00.32 ksoftirqd/0 4 root RT 0 0 0 0 S 0 0.0 0:00.00 watchdog/0 5 root RT 0 0 0 0 S 0 0.0 0:02.00 migration/1 6 root 34 19 0 0 0 S 0 0.0 0:00.11 ksoftirqd/1 7 root RT 0 0 0 0 S 0 0.0 0:00.00 watchdog/1 8 root RT 0 0 0 0 S 0 0.0 0:01.29 migration/2 9 root 34 19 0 0 0 S 0 0.0 0:00.26 ksoftirqd/2 10 root RT 0 0 0 0 S 0 0.0 0:00.00 watchdog/2 11 root RT 0 0 0 0 S 0 0.0 0:00.90 migration/3 12 root 34 19 0 0 0 R 0 0.0 0:00.20 ksoftirqd/3 13 root RT 0 0 0 0 S 0 0.0 0:00.00 watchdog/3 top output (ordered by CPU time) top - 21:46:12 up 5 days, 10:41, 3 users, load average: 2.88, 3.82, 4.55 Tasks: 217 total, 1 running, 216 sleeping, 0 stopped, 0 zombie Cpu(s): 3.7%us, 2.0%sy, 2.0%ni, 67.2%id, 25.0%wa, 0.0%hi, 0.1%si, 0.0%st Mem: 2074580k total, 1959516k used, 115064k free, 183116k buffers Swap: 2040212k total, 84k used, 2040128k free, 1090308k cached PID USER PR NI VIRT RES SHR S %CPU %MEM TIME+ TIME COMMAND 32367 root 16 0 215m 212m 1548 S 0 10.5 62:03.63 62:03 tailwatchd 1586 root 10 -5 0 0 0 S 0 0.0 11:45.27 11:45 kjournald 1576 root 10 -5 0 0 0 S 0 0.0 2:37.86 2:37 kjournald 27722 root 16 0 2556 1184 800 S 0 0.1 1:48.94 1:48 top 15930 mysql 15 0 138m 46m 4380 S 4 2.3 1:48.63 1:48 mysqld 2932 root 34 19 0 0 0 S 0 0.0 1:41.05 1:41 kipmi0 226 root 10 -5 0 0 0 S 0 0.0 1:34.33 1:34 kswapd0 2671 named 25 0 74688 7400 2116 S 0 0.4 1:23.58 1:23 named 3229 root 15 0 10300 3348 2724 S 0 0.2 0:40.85 0:40 sshd 1580 root 10 -5 0 0 0 S 0 0.0 0:30.62 0:30 kjournald 1 root 17 0 2156 648 560 S 0 0.0 0:26.32 0:26 init 2616 root 15 0 1816 576 480 S 0 0.0 0:23.50 0:23 syslogd 1584 root 10 -5 0 0 0 S 0 0.0 0:18.67 0:18 kjournald 4342 root 34 19 27692 11m 2116 S 0 0.5 0:18.23 0:18 yum-updatesd 8044 bollingp 15 0 3456 2036 740 S 1 0.1 0:15.56 0:15 imapd 26 root 10 -5 0 0 0 S 0 0.0 0:14.18 0:14 kblockd/1 7989 gmailsit 16 0 3196 1748 736 S 0 0.1 0:10.43 0:10 imapd iostat -xtk 1 10 output [root@server1 tmp]# iostat -xtk 1 10 Linux 2.6.18-53.el5 12/18/2012 Time: 09:51:06 PM avg-cpu: %user %nice %system %iowait %steal %idle 5.83 0.19 2.53 11.85 0.00 79.60 Device: rrqm/s wrqm/s r/s w/s rkB/s wkB/s avgrq-sz avgqu-sz await svctm %util sda 1.37 118.83 18.70 54.27 131.47 692.72 22.59 4.90 67.19 3.10 22.59 sdb 0.35 39.33 20.33 61.43 158.79 403.22 13.75 5.23 63.93 3.77 30.80 Time: 09:51:07 PM avg-cpu: %user %nice %system %iowait %steal %idle 1.50 0.00 0.50 24.00 0.00 74.00 Device: rrqm/s wrqm/s r/s w/s rkB/s wkB/s avgrq-sz avgqu-sz await svctm %util sda 0.00 25.00 2.00 2.00 128.00 108.00 118.00 0.03 7.25 4.00 1.60 sdb 0.00 16.00 41.00 145.00 200.00 668.00 9.33 107.92 272.72 5.38 100.10 Time: 09:51:08 PM avg-cpu: %user %nice %system %iowait %steal %idle 2.00 0.00 1.50 29.50 0.00 67.00 Device: rrqm/s wrqm/s r/s w/s rkB/s wkB/s avgrq-sz avgqu-sz await svctm %util sda 0.00 95.00 3.00 33.00 12.00 480.00 27.33 0.07 1.72 1.31 4.70 sdb 0.00 14.00 1.00 228.00 4.00 960.00 8.42 143.49 568.01 4.37 100.10 Time: 09:51:09 PM avg-cpu: %user %nice %system %iowait %steal %idle 13.28 0.00 2.76 21.30 0.00 62.66 Device: rrqm/s wrqm/s r/s w/s rkB/s wkB/s avgrq-sz avgqu-sz await svctm %util sda 0.00 21.00 1.00 19.00 16.00 192.00 20.80 0.06 3.55 1.30 2.60 sdb 0.00 36.00 28.00 181.00 124.00 884.00 9.65 121.16 617.31 4.79 100.10 Time: 09:51:10 PM avg-cpu: %user %nice %system %iowait %steal %idle 4.74 0.00 1.50 25.19 0.00 68.58 Device: rrqm/s wrqm/s r/s w/s rkB/s wkB/s avgrq-sz avgqu-sz await svctm %util sda 0.00 20.00 3.00 15.00 12.00 136.00 16.44 0.17 7.11 3.11 5.60 sdb 0.00 0.00 103.00 60.00 544.00 248.00 9.72 52.35 545.23 6.14 100.10 Time: 09:51:11 PM avg-cpu: %user %nice %system %iowait %steal %idle 1.24 0.00 1.24 25.31 0.00 72.21 Device: rrqm/s wrqm/s r/s w/s rkB/s wkB/s avgrq-sz avgqu-sz await svctm %util sda 0.00 75.00 4.00 28.00 16.00 416.00 27.00 0.08 3.72 2.03 6.50 sdb 2.00 9.00 124.00 17.00 616.00 104.00 10.21 3.73 213.73 7.10 100.10 Time: 09:51:12 PM avg-cpu: %user %nice %system %iowait %steal %idle 1.00 0.00 0.75 24.31 0.00 73.93 Device: rrqm/s wrqm/s r/s w/s rkB/s wkB/s avgrq-sz avgqu-sz await svctm %util sda 0.00 24.00 1.00 9.00 4.00 132.00 27.20 0.01 1.20 1.10 1.10 sdb 4.00 40.00 103.00 48.00 528.00 212.00 9.80 105.21 104.32 6.64 100.20 Time: 09:51:13 PM avg-cpu: %user %nice %system %iowait %steal %idle 2.50 0.00 1.75 23.25 0.00 72.50 Device: rrqm/s wrqm/s r/s w/s rkB/s wkB/s avgrq-sz avgqu-sz await svctm %util sda 0.00 125.74 3.96 46.53 15.84 689.11 27.92 0.20 4.06 2.41 12.18 sdb 2.97 0.00 91.09 84.16 419.80 471.29 10.17 85.85 590.78 5.66 99.11 Time: 09:51:14 PM avg-cpu: %user %nice %system %iowait %steal %idle 0.75 0.00 0.50 24.94 0.00 73.82 Device: rrqm/s wrqm/s r/s w/s rkB/s wkB/s avgrq-sz avgqu-sz await svctm %util sda 0.00 88.00 1.00 7.00 4.00 380.00 96.00 0.04 4.38 3.00 2.40 sdb 3.00 7.00 111.00 44.00 540.00 208.00 9.65 18.58 581.79 6.46 100.10 Time: 09:51:15 PM avg-cpu: %user %nice %system %iowait %steal %idle 11.03 0.00 3.26 26.57 0.00 59.15 Device: rrqm/s wrqm/s r/s w/s rkB/s wkB/s avgrq-sz avgqu-sz await svctm %util sda 0.00 145.00 7.00 53.00 28.00 792.00 27.33 0.15 2.50 1.55 9.30 sdb 1.00 0.00 155.00 0.00 800.00 0.00 10.32 2.85 18.63 6.46 100.10 [root@server1 tmp]# MySQL Show Full Processlist mysql> show full processlist; +------+---------------+-----------+-----------------------+----------------+------+----------------------------+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+ | Id | User | Host | db | Command | Time | State | Info | +------+---------------+-----------+-----------------------+----------------+------+----------------------------+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+ | 1 | DB_USER_ONE | localhost | DB_ONE | Query | 3 | waiting for handler insert | INSERT DELAYED INTO defers (mailtime,msgid,email,transport_method,message,host,ip,router,deliveryuser,deliverydomain) VALUES(FROM_UNIXTIME('1355879748'),'1TivwL-0003y8-8l','[email protected]','remote_smtp','SMTP error from remote mail server after initial connection: host mx1.mail.tw.yahoo.com [203.188.197.119]: 421 4.7.0 [TS01] Messages from 75.125.90.146 temporarily deferred due to user complaints - 4.16.55.1; see http://postmaster.yahoo.com/421-ts01.html','mx1.mail.tw.yahoo.com','203.188.197.119','lookuphost','','') | | 2 | DELAYED | localhost | DB_ONE | Delayed insert | 52 | insert | | | 3 | DELAYED | localhost | DB_ONE | Delayed insert | 68 | insert | | | 911 | DELAYED | localhost | DB_ONE | Delayed insert | 99 | Waiting for INSERT | | | 993 | DB_USER_TWO | localhost | DB_TWO | Sleep | 832 | | NULL | | 994 | DB_USER_ONE | localhost | DB_ONE | Query | 185 | Locked | delete from failures where FROM_UNIXTIME(UNIX_TIMESTAMP(NOW())-1296000) > mailtime | | 1102 | DB_USER_THREE | localhost | DB_THREE | Query | 29 | NULL | commit | | 1249 | DB_USER_FOUR | localhost | DB_FOUR | Query | 13 | NULL | commit | | 1263 | root | localhost | DB_FIVE | Query | 0 | NULL | show full processlist | | 1264 | DB_USER_SIX | localhost | DB_SIX | Query | 3 | NULL | commit | +------+---------------+-----------+-----------------------+----------------+------+----------------------------+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+ 10 rows in set (0.00 sec)

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• can't figure out why apache LDAP auth fails

  - by SethG

  Suddenly, yesterday, one of my apache servers became unable to connect to my LDAP (AD) server. I have two sites running on that server, both of which use LDAP to auth against my AD server when a user logs in to either site. It had been working fine two days ago. For reasons unknown, as of yesterday, it stopped working. The error log only says this: auth_ldap authenticate: user foo authentication failed; URI /FrontPage [LDAP: ldap_simple_bind_s() failed][Can't contact LDAP server], referer: http://mysite.com/ I thought perhaps my self-signed SSL cert had expired, so I created a new one for mysite.com, but not for the server hostname itself, and the problem persisted. I enabled debug-level logging. It shows the full SSL transaction with the LDAP server, and it appears to complete without errors until the very end when I get the "Can't contact LDAP server" message. I can run ldapsearch from the commandline on this server, and I can login to it, which also uses LDAP, so I know that the server can connect to and query the LDAP/AD server. It is only apache that cannot connect. Googling for an answer has turned up nothing, so I'm asking here. Can anybody provide insight to this problem? Here's the LDAP section from the apache config: <Directory "/web/wiki/"> Order allow,deny Allow from all AuthType Basic AuthName "Login" AuthBasicProvider ldap AuthzLDAPAuthoritative off #AuthBasicAuthoritative off AuthLDAPUrl ldaps://domain.server.ip/dc=full,dc=context,dc=server,dc=name?sAMAccountName?sub AuthLDAPBindDN cn=ldapbinduser,cn=Users,dc=full,dc=context,dc=server,dc=name AuthLDAPBindPassword password require valid-user </Directory>

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• Users in ubuntu; Cant figure it out

  - by Camran

  I am the only one who will have access to my website. Just installed my VPS and managed to get most stuff working. However, stuck on the "members" part. Currently, everything has been done as "root". I have read posts that I should create a user, because root isn't ideal. I have found thousand guides on how to create a user, but now what to do next. 1- Should I create a user with adduser username and then add the user to a group? But which group? 2- And will the user then be able to do everything as I have done logged on as "root"? 3- And somebody plz explain what "sudo" has to do with this? (if anything at all) Thanks

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• gparted dont figure any partition

  - by radi

  hi all , i am trying to install ununtu 10.04 lts on my laptop , first i installed it inside windows and when it boot for first time i got the error message "dont find root file system , try partition table to fix the problem " . and when i want to install it on a single partition (normally) and when it told me to chose a partition i dont find any partition (entire disk) . i have 2 primary partitions and 3 logical partitions . please help me thanks .

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• VSFTPD: Cannot figure this thing out...

  - by A Wizard Did It

  Alright, I've been giving this the best that I can, reading through various tutorials on google, but I cannot seem to get vsftpd running the way I want. For a short while I had it working with one account, but then that stopped and I haven't been able to get it to work since. I've since reformated and reinstall Ubuntu 10.04 LTS. I used apt-get install vsftpd and that's where I am now... I'd really appreciate if anyone could help me understand exactly how this is supposed to work... How do I add FTP accounts and set their home directory to something like /var/www/public_html?

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• Have a server, need to figure out a method of backup

  - by PolishHurricane

  My company has an older Dell 2650 server running ArchLinux x64: http://www.dell.com/downloads/global/products/pedge/en/2650_specs.pdf (2 x 2.4GHz Intel Xeon w/around 3287 RAM according to "free -m") We use it to host our internal company site and to post some information from our orders to and we'd like the ability to keep it up as much as possible. What we require: - It needs to always be functional from 8am to 4pm for our data entry person to use it and others to do other things required on it. - If it goes down, we need a quick way to get the machine running again. - If it goes down, we would like to have the data backed up. Some of the major problems include: - The servers old and it may have memory issues - We don't know when one of the hard drives could fail - Our power goes out here once in a while We have a battery backup, but that's pretty much it and it's not for long term. If the server does go down, we have another system in place to store order information that comes in while it's down and repost it when it's back, but we need it up during the day. So we're wondering, what should we get for options? These are the things we thought of, sort of: Setup RAID 1, but that would involve wiping everything right? If we do that, how would we transfer the data over without messing up the server? We could buy an extra server or 2 off eBay for $100, the same model, is that practical or should we get something else? Should we buy a PC or another better server and host off that because it is if anything easier to exchange parts? Should we keep extra parts handy incase it implodes? Should we buy/use backup software? We hear drobo's are cool, but suck. Perhaps there is a software solution to this problem that backs up to another machine or gets us up and running again quickly. Also, if we are to purchase hardware, what is decent? Does anybody know of one for ArchLinux/Linux? We both know a ton about computers but we're kind of unsure what step to take with this, especially with this type of server. Thanks

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• Need help to figure out iptables rule

  - by Master

  I have this iptable rule listing Chain INPUT (policy DROP) target prot opt source destination ACCEPT tcp -- 127.0.0.1 0.0.0.0/0 tcp dpt:3306 acctboth all -- 0.0.0.0/0 0.0.0.0/0 VZ_INPUT all -- 0.0.0.0/0 0.0.0.0/0 ACCEPT tcp -- 0.0.0.0/0 0.0.0.0/0 tcp dpt:3306 ACCEPT tcp -- 0.0.0.0/0 0.0.0.0/0 tcp dpt:3306 ACCEPT tcp -- 0.0.0.0/0 0.0.0.0/0 tcp dpt:3306 ACCEPT tcp -- 94.101.25.40 0.0.0.0/0 state NEW tcp dpt:3306 Chain FORWARD (policy DROP) target prot opt source destination VZ_FORWARD all -- 0.0.0.0/0 0.0.0.0/0 Chain OUTPUT (policy DROP) target prot opt source destination acctboth all -- 0.0.0.0/0 0.0.0.0/0 VZ_OUTPUT all -- 0.0.0.0/0 0.0.0.0/0 ACCEPT tcp -- 94.101.25.40 0.0.0.0/0 state NEW tcp dpt:3306 I want only localhost and my ip to access tcp 3306. Can i deleted all other rules as shown above. I don't know if i nned to keep any of them or not

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• Google App Engine - Figure out the time the current request reached the app engine

  - by Spines

  Is there a way I can figure out the time the current request reached the app engine? For example a user might make a request to my app, but due to app engine latencies my code might not start handling the request until one second later, is there a way I can figure out that the user has already had to wait one second? The reason I want to know how to do this is because I want to do different things based on if the user already had to wait. If the user already had to wait a significant amount of time I will just serve them a page out of the cache, if the user hasn't had to wait yet then I will serve them a page which takes a while to render.

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• Can you figure out the password hashing scheme?

  - by Adal

  I have two passwords and two resulting hashes. I can't figure out how the hash is derived from the password. I don't know if salting is used. I don't know if the password is hashed as a integer value or as a string (possibly Unicode). Password: 6770 Hash: c12114b91a3841c143bbeb121693e80b Password: 9591 Hash: 25238d578b6a61c2c54bfe55742984c1 The hash length seems to suggest MD5. Anybody has any ideas what I could try? Note: This is not for hacking purposes. I'm trying to access a service through an API instead of it's desktop client, and I can't figure out how to compute the password hash. Currently instead of using my real password I'm sending directly the hash.

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• Pass data from workspace to a function

  - by Tim

  I created a GUI and used uiimport to import a dataset into matlab workspace, I would like to pass this imported data to another function in matlab...How do I pass this imported dataset into another function....I tried doing diz...but it couldnt pick diz....it doesnt pick the data on the matlab workspace....any ideas?? [file_input, pathname] = uigetfile( ... {'*.txt', 'Text (*.txt)'; ... '*.xls', 'Excel (*.xls)'; ... '*.*', 'All Files (*.*)'}, ... 'Select files'); uiimport(file_input); M = dlmread(file_input); X = freed(M);

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• Problem with input filter using doxygen 1.6.3 on windows XP

  - by Marc

  I am trying to use doxygen to generate documentation for some matlab classes I have written. I am using the doxygen-matlab package, which includes a perl script to kludge matlab .m files into c++ style commented files, so that doxygen can read them. In my doxyfile, I have set (according to the instructions) FILTER_PATTERNS = *m=C:/doxygenMatlab/m2cpp.pl However, when the code runs, rather than running the script on the input files, it appears to just open the script using whatever the default windows setting for .pl is. IE, if I associate .pl with notepad, the script is opened by notepad once for each input file doxygen is trying to parse. If I associate .pl with perl.exe, the script runs and throws the no argument error Argument must contain filename -1 at C:\doxygenMatlab\m2cpp.pl line 4. The doxygen documentation says Doxygen will invoke the filter program by executing (via popen()) the command <filter> <input-file> So I am wondering if there is some problem with popen() and windows that I could fix.

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• What do you think is the best language for Bioinformatics?

  - by Ben Fossen

  I have done a couple research jobs in Bio-informatics and I have used Matlab for them. Matlab had a lot of powerful tools and was easy to use. I did thinks with genome sequencing and predicting metabolic pathways. I am wondering what other people think is best? or there might not be one specific language but a few that lend themselves best to Bio-informatics work that is math heavy and deals with a large amount of data.

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• Does anyone use AMPL anymore

  - by steven

  I took a class on "Intelligent Decision Making" (which was mostly an Problem Optimization class). In the class we learned about AMPL and how to extend the solvers. I haven't heard much about it lately, nor have I seen job listings for it. My question is: Is AMPL still in use anymore? If so what is it being used for? Yes, I do understand that AMPL can be replaced with Matlab, however AMPL is free and Matlab isn't even close.

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• Matrix "Zigzag" Reordering

  - by fbrereto

  I have an NxM matrix in Matlab that I would like to reorder in similar fashion to the way JPEG reorders its subblock pixels: (referenced from here) I would like the algorithm to be generic such that I can pass in a 2D matrix with any dimensions. I am a C++ programmer by trade and am very tempted to write an old school loop to accomplish this, but I suspect there is a better way to do it in Matlab.

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• What is the best way to flag some elements in MATLAB? using NaN or Inf? or something else?

  - by Kamran Bigdely Shamloo

  As you may know, in many occasions, there is a need to flag some elements of a matrix. For example when we have weighted adjacency matrix, and our graph is not fully connected, we have to flag some elements to show that there is no edge between those nodes. The question is how to do that? Is it better to put NaN or Inf on that elements in the matrix? or something elese(such as -1)?

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