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  • geom_rect and NULL

    - by csgillespie
    I've been looking at the geom_rect example in section 5.10 of the ggplot2 book and don't understand the purpose of the NULL's in the aes function. For example, using the mpg data: g = ggplot(data=mpg, aes(x=displ, y=hwy)) + geom_point() #Produces a plot with a transparent filled region g + geom_rect(aes(NULL, NULL), alpha=0.1,xmin=5, xmax=7, ymin=10, ymax=45, fill="blue") #Solid filled region (v0.9) or nothing in v0.8 g + geom_rect(alpha=0.1,xmin=5, xmax=7, ymin=10, ymax=45, fill="blue") My understanding is that the NULL's are resetting the x & y mapping, but I don't see why this should affect the transparency.

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  • How can I output the fitted values?

    - by zenbomb
    Sorry if this is a novice question, but I don't understand it. I am fitting a sigmoid curve to my data with glm(). This works, I can plot the output and I see a nice sigmoid curve. However, how do I get R to return the final values it has fit? As I understand it, R fits the data to logit(y) = b0 + b1x, but when I do > summary(glm.out) I only get Call: glm(formula = e$V2 ~ e$V1, family = binomial(logit), data = e) Deviance Residuals: 1 2 3 4 5 6 7 -0.00001 -0.06612 -0.15118 -0.34237 0.20874 0.08724 -0.19557 Coefficients: Estimate Std. Error z value Pr(>|z|) (Intercept) -24.784 20.509 -1.208 0.227 e$V1 2.073 1.725 1.202 0.229 (Dispersion parameter for binomial family taken to be 1) Null deviance: 4.60338 on 6 degrees of freedom Residual deviance: 0.23388 on 5 degrees of freedom AIC: 5.8525 Number of Fisher Scoring iterations: 8 How do I get b0 and b1?

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  • two line label with expression

    - by metasequoia
    I'd like to write an axis label over two lines with an expression() statement. However, plotmath and expression won't allow this (e.g. subscript appear on the far right). I found this discussion circa 2005 of a similar issue but the work around that they offer doesn't translate to my application in ggplot2. A recent question addressed a a different permutation of multi-line expression statements, but again the work around provided doesn't apply here. Example: p <- ggplot(mtcars,aes(x=wt,y=mpg))+ geom_point()+ xlab(expression(paste("A long string of text goes here just for the purpose \n of illustrating my point Weight "[reported]))) try(ggsave(plot=p,filename=<some file>,height=4,width=6)) yields an image where subscript "reported" is kicked out to the right when I'd like it to sit next to the previous word.

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  • FFT in MATLAB: wrong 0Hz frequency

    - by roujhan
    Hello I want to use fft in MATLAB to analize some exprimental data saved as an excell file. my code: A=xlsread('Book.xls'); G=A'; x=G(2, : ); N=length(x); F=[-N/2:N/2-1]/N; X = abs(fft(x-mean(x),N)) X = fftshift(X); plot(F,X) But it plots a graph with a large 0Hz wrong component, my true frequency is about 395Hz and it is not shown in the plotted graph. Please tell me what is wrong. Any help would be appreciated.

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  • How can I load an MP3 or similar music file for display and anaysis in wxWdigets?

    - by Jon Cage
    I'm developing a GUI in wxPython which allows a user to generate sequences of colours for some toys I'm building. Part of the program needs to load an MP3 (and potentially other formats further down the line) and display it to the user. That shuold be sufficient to get started but later I'd like to add features like identifying beats and some crude frequency analysis. Is there any simple way of loading / understanding an MP3's contents to display a plot of it's amplitudes to the screen using wxWidgets? I later intend to port to C++/wxWidgets for speed and to avoid having to distribute wxPython.

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  • Combining bordering shapefiles in R

    - by Stedy
    I have five shapefiles of bordering counties in California that I am trying to combine into one large shapefile and maintain the original borders of the counties. I then want to plot points such as this so the map only needs to be a simple map of county boundaries. Is there a way to do this in R or will I have to use something like ArcGIS? There is extensive documentation about merging within a shapefile such as here where both shapefiles have the same coordinates. But no documentation on shapefiles that only partially share coordinates.

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  • How to get id vertex from name vertex in R and Igraph?

    - by user1310873
    I have a graph with names from 1 to 10 library(igraph) library(Cairo) g<- graph(c(0,1,0,4,0,9,1,7,1,9,2,9,2,3,2,5,3,6,3,9,4,5,4,8,5,8,6,7,6,8,7,8),n=10,dir=FALSE) V(g)$name<-c(1:10) V(g)$label<-V(g)$name coords <- c(0,0,13.0000,0,5.9982,5.9991,7.9973,7.0009,-1.0008,11.9999,0.9993,11.0002,7.9989,13.0009,10.9989,14.0009,5.9989,14.0009,7.0000,4.0000) coords <- matrix(coords, 10,2,byrow=T) plot(g,layout=coords) listMn<-neighborhood(g,1,0:9) I'd like to do this but in opposite way m1<-V(g)[listMn[[7]]]$name the above instructions gets, 7 4 8 9 how to get listMn[[7]]=6 3 7 8 from names 7 4 8 9?

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  • Error " Index exceeds Matrix dimensions"

    - by Mola
    Hi experts, I am trying to read an excel 2003 file which consist of 62 columns and 2000 rows and then draw 2d dendrogram from 2000 pattern of 2 categories of a data as my plot in matlab. When i run the script, it gives me the above error. I don't know why. Anybody has any idea why i have the above error? My data is here: http://rapidshare.com/files/383549074/data.xls Please delete the 2001 column if you want to use the data for testing. and my code is here: % Script file: cluster_2d_data.m d=2000; n1=22; n2=40; N=62 Data=xlsread('data.xls','A1:BJ2000'); X=Data'; R=1:2000; C=1:2; clustergram(X,'Pdist','euclidean','Linkage','complete','Dimension',2,... 'ROWLABELS',R,'COLUMNLABELS',C,'Dendrogram',{'color',5})

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  • Display continious dates in Pivot Chart

    - by Douglas
    I have a set of data in a pivot table with date times and events. I've made a pivot chart with this data, and grouped the data by day and year, then display a count of events for each day. So, my horizontal axis goes from 19 March 2007 to 11 May 2010, and my vertical axis is numeric, going from zero to 140. For some days, I have zero events. These days don't seem to be shown on the horizontal axis, so 2008 is narrower than 2009. How do I display a count of zero for days with no events? I'd like my horizontal axis to be continuous, so that it does not miss any days, and every month ends up taking up the same amount of horizontal space. (This question is similar to the unanswered question here, but I'd rather not generate a table of all the days in the last x number of years just to get a smooth plot!)

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  • Assign grid.arrange to object

    - by Tyler Rinker
    I want to arrange plots with grid.arrange to make more complex coplots and then use grid.arrange to combine these complex coplots. I am using the following solution (http://stackoverflow.com/a/13295880/1000343) in this task to arrange mutliple plots and ensure they have equal widths. Here is a demo of the code: library(ggplot2); library(gridExtra) gA <- ggplotGrob(A) gB <- ggplotGrob(B) maxWidth = grid::unit.pmax(gA$widths[2:5], gB$widths[2:5]) gA$widths[2:5] <- as.list(maxWidth) gB$widths[2:5] <- as.list(maxWidth) x <- grid.arrange(gA, gB, ncol=1) y <- grid.arrange(gA, gB, ncol=1) grid.arrange(x, y, ncol=2) To be clear in my case x and y are slightly different plots with different values. I know grid.arrange isn't returning the plot as other grid based functions.

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  • Accessing loop iteration in a sub-function?

    - by DisgruntledGoat
    I'm using the Google Maps API to plot several points on a map. However, in the click event function below, i is always set to 4, i.e. its value after iterating the loop: // note these are actual addresses in the real page var addresses = new Array( "addr 1", "addr 2", "addr 3", "addr 4" ); for (var i = 0; i < addresses.length; i++) { geocoder.getLatLng(addresses[i], function(point) { if (point) { var marker = new GMarker(point); map.addOverlay(marker); map.setCenter(point, 13); GEvent.addListener(marker, "click", function() { // here, i=4 marker.openInfoWindowHtml("Address: <b>" + addresses[i] + "</b>"); }); } }); } So when the marker displays it's using addresses[4] which is undefined. How do I pass the correct value of i to the function?

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  • making errorbars not clipped in matplotlib with Python

    - by user248237
    I am using matplotlib in Python to plot a line with errorbars as follows: plt.errorbar(xvalues, up_densities, yerr=ctl_sds, fmt='-^', lw=1.2, markersize=markersize, markeredgecolor=up_color, color=up_color, label="My label", clip_on=False) plt.xticks(xvalues) I set the ticks on the x-axis using "xticks". However, the error bars of the last point in xvalues (i.e. xvalues[-1]) are clipped on the right -- meaning only half an error bar appears. This is true even with the clip_on=False option. How can I fix this, so that the error bars appear in full, even though their right side is technically outside xvalues[-1]? thanks.

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  • Is there any way that I can draw fast a chart with too many series? [on hold]

    - by Maryam Bagheri
    I have a project that need to draw a fast chart with many series. I must change start position of drawing to a favor position when user want. .Net Chart is slow in lots of series. I wanted to use this library: http://www.codeproject.com/Articles/32836/A-simple-C-library-for-graph-plotting?msg=4109664#xx4109664xx but loading speed is too slow when count of series increases. When I plot the chart, I must invalidate the chart for updates, drawing speed will be too slow if there are too many series. I need at least 900 series in a chart for this project. I wanted to use multiple layer series to decrease invalidate rate with the idea: http://www.codeproject.com/Articles/84833/Drawing-multiple-layers-without-flicker I do not know this idea would be helpful. I tested LightningChart control but it could not help me.

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  • Java: Is it possible to take a GUI Panel and output it into a picture?

    - by user369748
    So I have this chart that's a little special. Kind of like an XY plot of points but my boss wanted to look like a bunch of boxes rather than dots connected by lines. And I basically made a chart using gridlayout and a whole bunch of cells that I'll be colouring in black or white depending on the data. Now he sorta wants it to be outputted to a image file. Is there any way to save a Panel into a picture? He wants to display not only the data but also save a visual representation of the data into an image file.

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  • Why do we need to estimate the true position in Kalman filters?

    - by Kalla
    I am following a probably well-known tutorial about Kalman filter here From these lines of code: figure; plot(t,pos, t,posmeas, t,poshat); grid; xlabel('Time (sec)'); ylabel('Position (feet)'); title('Figure 1 - Vehicle Position (True, Measured, and Estimated)') I understand that x is the true position, y is measured position, xhat is estimated position. Then, if we can compute x (this code: x = a * x + b * u + ProcessNoise;), why do we need to estimated x anymore?

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  • Subplots of multidimensional arrays in Matlab

    - by altes4ia
    I have a 10x10x10 array, z. How do I plot everything in the SAME window so that I would have the 3 plots for z(:,:,1) and below it the three plots for z(:,:,2) etc ? This is what I have so far: for i = 1:10 z=z(:,:,i); figure(i) subplot(1,2,1) surf(z) %code, obtain new array called "new1"... subplot(1,2,2) surf(new1) %code, obtain new array called "new2"... subplot(1,3,3) surf(new2) end;

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  • how to visualize (value, count) dataset with thousands data points

    - by user510040
    I have a file with 2 numeric columns: value and count. File may have 5000 rows. I do plot(value, count) to find the shape of distribution. But because there are too many data points the picture is not very clear. Do you know better visualization approach? Probably histograms or barplot with grouping close values on x axis will be the better way to look on data? I cannot figure out the syntax of using histogram or barplot for my case.

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  • A gigabit network interface is CPU-limited to 25MB/s. How can I maximize the throughput?

    - by netvope
    I have a Acer Aspire R1600-U910H with a nForce gigabit network adapter. The maximum TCP throughput of it is about 25MB/s, and apparently it is limited by the single core Intel Atom 230; when the maximum throughput is reached, the CPU usage is about 50%-60%, which corresponds to full utilization considering this is a Hyper-threading enabled CPU. The same problem occurs on both Windows XP and on Ubuntu 8.04. On Windows, I have installed the latest nForce chipset driver, disabled power saving features, and enabled checksum offload. On Linux, the default driver has checksum offload enabled. There is no Linux driver available on Nvidia's website. ethtool -k eth0 shows that checksum offload is enabled: Offload parameters for eth0: rx-checksumming: on tx-checksumming: on scatter-gather: on tcp segmentation offload: on udp fragmentation offload: off generic segmentation offload: off The following is the output of powertop when the network is idle: Wakeups-from-idle per second : 61.9 interval: 10.0s no ACPI power usage estimate available Top causes for wakeups: 90.9% (101.3) <interrupt> : eth0 4.5% ( 5.0) iftop : schedule_timeout (process_timeout) 1.8% ( 2.0) <kernel core> : clocksource_register (clocksource_watchdog) 0.9% ( 1.0) dhcdbd : schedule_timeout (process_timeout) 0.5% ( 0.6) <kernel core> : neigh_table_init_no_netlink (neigh_periodic_timer) And when the maximum throughput of about 25MB/s is reached: Wakeups-from-idle per second : 11175.5 interval: 10.0s no ACPI power usage estimate available Top causes for wakeups: 99.9% (22097.4) <interrupt> : eth0 0.0% ( 5.0) iftop : schedule_timeout (process_timeout) 0.0% ( 2.0) <kernel core> : clocksource_register (clocksource_watchdog) 0.0% ( 1.0) dhcdbd : schedule_timeout (process_timeout) 0.0% ( 0.6) <kernel core> : neigh_table_init_no_netlink (neigh_periodic_timer) Notice the 20000 interrupts per second. Could this be the cause for the high CPU usage and low throughput? If so, how can I improve the situation? As a reference, the other computers in the network can usually transfer at 50+MB/s without problems. A computer with a Core 2 CPU generates only 5000 interrupts per second when it's transferring at 110MB/s. The number of interrupts is about 20 times less than the Atom system (if interrupts scale linearly with throughput.) And a minor question: How can I find out what is the driver in use for eth0?

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  • How to Sync Any Folder With SkyDrive on Windows 8.1

    - by Chris Hoffman
    Before Windows 8.1, it was possible to sync any folder on your computer with SkyDrive using symbolic links. This method no longer works now that SkyDrive is baked into Windows 8.1, but there are other tricks you can use. Creating a symbolic link or directory junction inside your SkyDrive folder will give you an empty folder in your SkyDrive cloud storage. Confusingly, the files will appear inside the SkyDrive Modern app as if they were being synced, but they aren’t. The Solution With SkyDrive refusing to understand and accept symbolic links in its own folder, the best option is probably to use symbolic links anyway — but in reverse. For example, let’s say you have a program that automatically saves important data to a folder anywhere on your hard drive — whether it’s C:\Users\USER\Documents\, C:\Program\Data, or anywhere else. Rather than trying to trick SkyDrive into understanding a symbolic link, we could instead move the actual folder itself to SkyDrive and then use a symbolic link at the folder’s original location to trick the original program. This may not work for every single program out there. But it will likely work for most programs, which use standard Windows API calls to access folders and save files. We’re just flipping the old solution here — we can’t trick SkyDrive anymore, so let’s try to trick other programs instead. Moving a Folder and Creating a Symbolic Link First, ensure no program is using the external folder. For example, if it’s a program data or settings folder, close the program that’s using the folder. Next, simply move the folder to your SkyDrive folder. Right-click the external folder, select Cut, go to the SkyDrive folder, right-click and select Paste. The folder will now be located in the SkyDrive folder itself, so it will sync normally. Next, open a Command Prompt window as Administrator. Right-click the Start button on the taskbar or press Windows Key + X and select Command Prompt (Administrator) to open it. Run the following command to create a symbolic link at the original location of the folder: mklink /d “C:\Original\Folder\Location” “C:\Users\NAME\SkyDrive\FOLDERNAME\” Enter the correct paths for the exact location of the original folder and the current location of the folder in your SkyDrive. Windows will then create a symbolic link at the folder’s original location. Most programs should hopefully be tricked by this symbolic location, saving their files directly to SkyDrive. You can test this yourself. Put a file into the folder at its original location. It will be saved to SkyDrive and sync normally, appearing in your SkyDrive storage online. One downside here is that you won’t be able to save a file onto SkyDrive without it taking up space on the same hard drive SkyDrive is on. You won’t be able to scatter folders across multiple hard drives and sync them all. However, you could always change the location of the SkyDrive folder on Windows 8.1 and put it on a drive with a larger amount of free space. To do this, right-click the SkyDrive folder in File Explorer, select Properties, and use the options on the Location tab. You could even use Storage Spaces to combine the drives into one larger drive. Automatically Copy the Original Files to SkyDrive Another option would be to run a program that automatically copies files from another folder on your computer to your SkyDrive folder. For example, let’s say you want to sync copies of important log files that a program creates in a specific folder. You could use a program that allows you to schedule automatic folder-mirroring, configuring the program to regularly copy the contents of your log folder to your SkyDrive folder. This may be a useful alternative for some use cases, although it isn’t the same as standard syncing. You’ll end up with two copies of the files taking up space on your system, which won’t be ideal for large files. The files also won’t be instantly uploaded to your SkyDrive storage after they’re created, but only after the scheduled task runs. There are many options for this, including Microsoft’s own SyncToy, which continues to work on Windows 8. If you were using the symbolic link trick to automatically sync copies of PC game save files with SkyDrive, you could just install GameSave Manager. It can be configured to automatically create backup copies of your computer’s PC game save files on a schedule, saving them to SkyDrive where they’ll be synced and backed up online. SkyDrive support was completely rewritten for Windows 8.1, so it’s not surprising that this trick no longer works. The ability to use symbolic links in previous versions of SkyDrive was never officially supported, so it’s not surprising to see it break after a rewrite. None of the methods above are as convenient and quick as the old symbolic link method, but they’re the best we can do with the SkyDrive integration Microsoft has given us in Windows 8.1. It’s still possible to use symbolic links to easily sync other folders with competing cloud storage services like Dropbox and Google Drive, so you may want to consider switching away from SkyDrive if this feature is critical to you.     

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  • How can story and gameplay be artfully merged?

    - by NauticalMile
    Let me give some context. Three of my friends and I have a pretty good game idea cooking. It's based off of a prototype I made that's evolving into a cool game mechanic. The mechanic itself is a toy that's fun on its own, but we haven't designed any puzzles around it yet. We have a design document going, and we are answering a lot of questions about what's in the game. It's become clear early on that everyone (including myself) likes the characters and the story a lot. Considering what our favorite games are, this is unsurprising. A story driven game makes sense to me. I like the emphasis that Paper Mario: The Thousand-Year-Door, Portal 2, and Tomb Raider place on story, and I imagine our game will have a similar feel (lots of dialogue, plot twists, lovable characters). However, one team member raised this point in the design doc: I am feeling like [fleshing out the story] is our biggest hurdle right now for making more design decisions - like more specific decisions about levels etc. Is this true? I am uncertain about working on the story extensively before gameplay, and my uneasiness was reinforced when I read this question about story vs. gameplay. What I want to say is: "Let's continue to work on the story, but also start brainstorming and prototyping abstract puzzles and combat sequences, and we'll creatively match them together later." Is this a reasonable approach? If so, how much of the development of these elements should be done independently? Should I try and create a whole bunch of puzzles while my other teammates focus on story and aesthetics? Then when we have a lot of story and game 'chunks' we can match them with eachother to build something meaningful. Or should we focus on iterating individual levels as distinct units where puzzles, story, etc... are designed together? Or maybe we need to put our excitement about the story on hold and just focus on gameplay. Is there another approach to design that we can take? Am I missing something crucial? I have discussed story and gameplay because they seem the most likely to be at odds with each other, but we also have to consider user interface, music, art direction, etc... Can we design these independently as well?

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  • How to remove a plain text protecting single quote from all the selected cells in LibreOffice Calc?

    - by Ivan
    I've imported a CSV file having the first column to be date-time values in ISO 8601 format like 2012-01-01T00:00:00.000Z for the first moment of the year 2012. Then, willing to make LibreOffice to recognize the format (as I was looking forward to plot a diagram), I've selected the column, chosen Format Cells... and entered the custom time format as YYYY-MM-DDTHH:MM:SS.000Z And this seems to work if... I edit a cell to remove a hidden single-quote from its beginning (which serves to protect a cell content from being interpreted) as all the newly formatted cells now store values like '2012-01-01T00:00:00.000Z (note the single quote - it is only visible when you edit a particular cell). And I am to do so for all the cells in the column. How can I automate this? UPDATE: I've already found a solution for the particular case of mine: it helps to set a column format to "time" in the CSV import dialogue. But I am still curious how could this be done in case I wouldn't have the original .csv data file to import but only the .ods file with the data already imported without the format specified at the import time.

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  • USB question (how durable is it, how should I workaround this)

    - by Shiki
    The plot is quite simple. Got a Razer mouse. If I plug it in, it works. After a shutdown/hibernation, I have to replug it entirely at the back of the PC. (It works in my laptop even after severel shutdown, etc, so yes I guess it's my motherboard.. but it still got 2 years of warranty and it comes with quad SLI, its not an old motherboard at all. (MSI P7N SLI FI (bought it after a hungarian guy's recommendation)). So. I only could come up with one "solution". Get 3 USB cable (you know, USB-USB). If its possible the shortest ones (don't know if the responsibility/anything will worsen), AND replug only the middle+closest to the USB port junction, since those are replaceable. What do you think? Any other idea? (BIOS is updated, mouse driver ... doesn't really matter, the mouse won't even blink a bit after this happens. It lights up and goes totally dead.)

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  • What does this example bash startup script do?

    - by Dimitri
    I am trying to set up GNU Octave on my computer (Mac OS X 10.7.4). I am newbie in using Terminal and I need help to understand what the following script actually does: if [ -f ~/.bashrc ];then<br> &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;. ~/.bashrc<br> fi<br> PATH=$PATH:/usr/local/bin<br> BASH_ENV=~/.bashrc<br> export BASH_ENV PATH<br> export GNUTERM=aqua<br> alias octave="/Applications/Octave.app/Contents/Resources/bin/octave"<br> alias gnuplot="/Applications/Gnuplot.app/Contents/Resources/bin/gnuplot"<br> (taken from here: http://wikibox.stanford.edu/me112/index.php/Main/OctaveMatlabNotes) So this script begins with the simple conditional if statement. I don't understand the conditional expression - what is -f and .bashrc? What the statement . ~/.bashrc actually does? Then 2 variables are defined PATH and BASH_ENV. Why are they exported? Why GNUTERM=aqua is exported even if it's not defined anywhere? All I need is a script that would allow me to run Octave by simply typing octave in the terminal. I don't need an alias for the gnu plot. Thanks

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  • Measuring performance indicators on a cluster

    - by Aditya Singh
    My architecture is based on Amazon. A ELB load balancer balances POST requests among m1.large instances. Every instance has a nginx server on port 80 which distributes the requests to 4 python-tornado servers on backend which handle the request. These tornado servers are taking about 5 - 10ms to respond to one request but this is the internal compute time of every request. I want to put this thing on test and i want to measure the response time from ELB to upstream and back and how does it vary when the QPS throughput is increased and plot a graph of Time vs. QPS vs. Latency and other factors like CPU and Memory. Is there a software to do that or should i log everything somewhere with latency checks and then analyze the whole log to get the stuff out. I would also need to write a self-monitor which keeps checking the whole response time. Is it possible to do it with a script from within the server. If so, will it be accurate ?

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  • File upload folder permission fastCGI - How to make it writeable?

    - by user6595
    I am using centos 5.7 with cPanel WHM running fastcgi/suEXEC I am trying to make a particular folder writable to allow a script to upload files but seem to be having problems. The folder (and all recursive folders) I want to be writable is: /home/mydomain/public_html/uploads And I want only scripts run by the user "songbanc" to be able to write to this directory. I have tried the following: chown -R songbanc /home/mydomain/public_html/uploads chmod -R 755 /home/mydomain/public_html/uploads But it still doesn't seem to work. The script will only upload files if I set the permissions manually via FTP client to 777. I assume I am misunderstanding how to set permission for users with fastcgi and hopefully someone can help me. Thanks in advance EDIT: Running getfacl on one of the scripts or folders gives the following: # file: home/mydomain/public_html/ripples/1.jpg # owner: songbanc # group: songbanc So it appears that the owner is correct? I'm now totally confused! EDIT 2: The plot thickens... lsattr and chattr are returning Inappropriate ioctl for device While reading flags on...

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