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  • Find Search Replace from landmark to landmark - including everything in between

    - by Erick Tronboll
    Appreciate some Jedi help... I have the following string: gi|374638939|gb|AEZ55452.1| myosin light chain 2, partial [Batrachoseps major] AAMGR repeating sporadically throughout my document and want to remove everything from: gi|37463 to the AAMGR sequence but, I want to keep the blocks where JQ250 appears: gi|374638936|gb|*JQ250*332.1| Batrachoseps major isolate b voucher DBW5974 myosin light chain 2 gene, partial cds GCNGCCATGGGTAAGTGAACGCGCCGGACCAGACCATTCACTGCATGCAATGGGGGCGTTTGTGGGTTGG AAGGTGTGCCAAAGATCTAGGGAACCCCAACTCCTCAGGATACGGGTGGGAGCCCTAAAATATGTCCAGC TATAAGGAGATGACCAATGGAAAAGGGGGTATCAGCAGTACTTTACCTGCTACTATAAGAGAATTGCATC CTGGGAATAGCCTCTGAAAGGTCCCATTTTAGCGACACTGGTAGATGGACACTGGCCTTTGGACAGCACC AGTAAGTAGAGCATTGCATCTTGGGATTCCTTTGCTGTTCACATGCCACTGAAAGCTCTCACCATAGCAG ATTCAAAATGCCTACCCGGCAGGTTGCCAGAAAAGCACTGCATCATGGGAGAACCACTTTTAGTGACAAT TCTAAGAGATGGGTGTCTCTCTGCCAGGCGCTATTATCCAGAGACCCCAGTATGACGTCGTCATTGCTCC CAGGTAACCATGTTCTCACCCCCTCTCCCACAGGCCGC and remove only the lines that have AEZ554 gi|374638939|gb|*AEZ554*52.1| myosin light chain 2, partial [Batrachoseps major] AAMGR ..................................... So, ideally the following block: gi|374638934|gb|JQ250331.1| Batrachoseps major isolate a voucher DBW5974 myosin light chain 2 gene, partial cds GCNGCCATGGGTAAGTGAACGCGCCGGACCAGACCATTCACTGCATGCAATGGGGGCGTTTGTGGGTTGG AAGGTGTGCCAAAGATCTAGGGAACCCCAACTCCTCAGGATACGGGTGGGAGCCCTAAAATATGTCCAGC TATAAGGAGATGACCAATGGAAAAGGGGGTATCAGCAGTACTTTACCTGCTACTATAAGAGAATTGCATC CTGGGAATAGCCTCTGAAAGGTCCCATTTTAGCGACACTGGTAGATGGACACTGGCCTTTGGACAGCACC AGTAAGTAGAGCATTGCATCTTGGGATTCCTTTGCTGTTCACATGCCACTGAAAGCTCTCACCATAGCAG ATTCAAAATGCCTACCCGGCAGGTTGCCAGAAAAGCACTGCATCATGGGAGAACCACTTTTAGTGACAAT TCTAAGAGATGGGTGTCTCTCTGCCAGGCGCTATTATCCAGAGACCCCAGTATGACGTCGTCATTGCTCC CAGGTAACCATGTTCTCACCCCCTCTCCCACAGGCCGC gi|374638935|gb|AEZ55450.1| myosin light chain 2, partial [Batrachoseps major] AAMGR gi|374638936|gb|JQ250332.1| Batrachoseps major isolate b voucher DBW5974 myosin light chain 2 gene, partial cds GCNGCCATGGGTAAGTGAACGCGCCGGACCAGACCATTCACTGCATGCAATGGGGGCGTTTGTGGGTTGG AAGGTGTGCCAAAGATCTAGGGAACCCCAACTCCTCAGGATACGGGTGGGAGCCCTAAAATATGTCCAGC TATAAGGAGATGACCAATGGAAAAGGGGGTATCAGCAGTACTTTACCTGCTACTATAAGAGAATTGCATC CTGGGAATAGCCTCTGAAAGGTCCCATTTTAGCGACACTGGTAGATGGACACTGGCCTTTGGACAGCACC AGTAAGTAGAGCATTGCATCTTGGGATTCCTTTGCTGTTCACATGCCACTGAAAGCTCTCACCATAGCAG ATTCAAAATGCCTACCCGGCAGGTTGCCAGAAAAGCACTGCATCATGGGAGAACCACTTTTAGTGACAAT TCTAAGAGATGGGTGTCTCTCTGCCAGGCGCTATTATCCAGAGACCCCAGTATGACGTCGTCATTGCTCC CAGGTAACCATGTTCTCACCCCCTCTCCCACAGGCCGC gi|374638937|gb|AEZ55451.1| myosin light chain 2, partial [Batrachoseps major] AAMGR gi|374638938|gb|JQ250333.1| Batrachoseps major isolate a voucher MVZ:Herp:249023 myosin light chain 2 gene, partial cds GCCGCCATGGGTAAGTGAACGCGCCGGACCAGACCATTCACTGCCTGCAATGGGGGTGTTTGTGGGTTGG AAGGTGTGCCAAAGATCTAGGGAACCCCAACTCCTCAGGATACGGGTGGGAGCCCTAAAATATGTCCAGC TATAAGGAGATGACCAATGGAAAAGGGGGTATCAGCAGTACTTTACTTGCTACTATAAGAGAATTGCATC CTGGGAATAGCCTCTGAAAGGTCCCATTTTAGCGACACTGGTAGATGGACACTGGCCTTTGGACAGCACC AGTAAGTAGAGCATTGCATCTTGGGATTCCTTTGCTGTTCACATGCCACTGAAAGCTCTCACCATAGCAG ATTCAAAATGCCTACCCGGCAGGTTGCCAGAAAAGCACTGCATCATGGGAGAACCACTTTTAGTGACAAT CCTAAGAGATGGGTGTCTCTCTGCCAGGCGCTATTATCCAAGAGACCCCAGTATGACGTCGTCATTGCTC CCAGGTAACCATGTTCTCACCCCCTCTCCCACAGGCCGC gi|374638939|gb|AEZ55452.1| myosin light chain 2, partial [Batrachoseps major] AAMGR Would be left as just: gi|374638934|gb|JQ250331.1| Batrachoseps major isolate a voucher DBW5974 myosin light chain 2 gene, partial cds GCNGCCATGGGTAAGTGAACGCGCCGGACCAGACCATTCACTGCATGCAATGGGGGCGTTTGTGGGTTGG AAGGTGTGCCAAAGATCTAGGGAACCCCAACTCCTCAGGATACGGGTGGGAGCCCTAAAATATGTCCAGC TATAAGGAGATGACCAATGGAAAAGGGGGTATCAGCAGTACTTTACCTGCTACTATAAGAGAATTGCATC CTGGGAATAGCCTCTGAAAGGTCCCATTTTAGCGACACTGGTAGATGGACACTGGCCTTTGGACAGCACC AGTAAGTAGAGCATTGCATCTTGGGATTCCTTTGCTGTTCACATGCCACTGAAAGCTCTCACCATAGCAG ATTCAAAATGCCTACCCGGCAGGTTGCCAGAAAAGCACTGCATCATGGGAGAACCACTTTTAGTGACAAT TCTAAGAGATGGGTGTCTCTCTGCCAGGCGCTATTATCCAGAGACCCCAGTATGACGTCGTCATTGCTCC CAGGTAACCATGTTCTCACCCCCTCTCCCACAGGCCGC gi|374638936|gb|JQ250332.1| Batrachoseps major isolate b voucher DBW5974 myosin light chain 2 gene, partial cds GCNGCCATGGGTAAGTGAACGCGCCGGACCAGACCATTCACTGCATGCAATGGGGGCGTTTGTGGGTTGG AAGGTGTGCCAAAGATCTAGGGAACCCCAACTCCTCAGGATACGGGTGGGAGCCCTAAAATATGTCCAGC TATAAGGAGATGACCAATGGAAAAGGGGGTATCAGCAGTACTTTACCTGCTACTATAAGAGAATTGCATC CTGGGAATAGCCTCTGAAAGGTCCCATTTTAGCGACACTGGTAGATGGACACTGGCCTTTGGACAGCACC AGTAAGTAGAGCATTGCATCTTGGGATTCCTTTGCTGTTCACATGCCACTGAAAGCTCTCACCATAGCAG ATTCAAAATGCCTACCCGGCAGGTTGCCAGAAAAGCACTGCATCATGGGAGAACCACTTTTAGTGACAAT TCTAAGAGATGGGTGTCTCTCTGCCAGGCGCTATTATCCAGAGACCCCAGTATGACGTCGTCATTGCTCC CAGGTAACCATGTTCTCACCCCCTCTCCCACAGGCCGC gi|374638938|gb|JQ250333.1| Batrachoseps major isolate a voucher MVZ:Herp:249023 myosin light chain 2 gene, partial cds GCCGCCATGGGTAAGTGAACGCGCCGGACCAGACCATTCACTGCCTGCAATGGGGGTGTTTGTGGGTTGG AAGGTGTGCCAAAGATCTAGGGAACCCCAACTCCTCAGGATACGGGTGGGAGCCCTAAAATATGTCCAGC TATAAGGAGATGACCAATGGAAAAGGGGGTATCAGCAGTACTTTACTTGCTACTATAAGAGAATTGCATC CTGGGAATAGCCTCTGAAAGGTCCCATTTTAGCGACACTGGTAGATGGACACTGGCCTTTGGACAGCACC AGTAAGTAGAGCATTGCATCTTGGGATTCCTTTGCTGTTCACATGCCACTGAAAGCTCTCACCATAGCAG ATTCAAAATGCCTACCCGGCAGGTTGCCAGAAAAGCACTGCATCATGGGAGAACCACTTTTAGTGACAAT CCTAAGAGATGGGTGTCTCTCTGCCAGGCGCTATTATCCAAGAGACCCCAGTATGACGTCGTCATTGCTC CCAGGTAACCATGTTCTCACCCCCTCTCCCACAGGCCGC ................................many thanks as I help a struggling Grad Student

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  • I need a regex to return true for 01.mp4

    - by Umair
    I want to sort out specific files depending on their names, i want a regex that returns true for file names like : 01.mp4, 99.avi, 05.mpg. the file extensions must match exactly to the ones that i want and the filename must start with characters which can not be longer than 2 characters. the first part is done but the file extensions aren't working. need some help the regex that I have is /^[0-9]{1,2}\.[mp4|mpg|avi]*/ but it also returns true for 01.4mp4, 01.4mp4m.

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  • Regular expression

    - by atno
    Hi I have an array that its first element might contains something like [some text, here. That's some text] I'm trying to figure out a pattern to check if such string exists and if not create it but having problem with making the pattern. Here's what I've done so far $pattern = '/^\[*\]$/'; if(preg_match($pattern,$exploded[0])){ $name = array_shift($exploded); }else{ $name = "[Unnamed import] - " .gmdate("His"); } But I always get [Unnamed import] - 032758 even when I'm sure that pattern match

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  • PHP regular expression for positive number with 0 or 2 decimal places

    - by Peter
    Hi I am trying to use the following regular expression to check whether a string is a positive number with either zero decimal places, or 2: ^\d+(\.(\d{2}))?$ When I try to match this using preg_match, I get the error: Warning: preg_match(): No ending delimiter '^' found in /Library/WebServer/Documents/lib/forms.php on line 862 What am I doing wrong?

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  • preg_match_all image source

    - by David
    I have the following regex expression which is to extract the source of any img tag in HTML. /(<img).*(src\s*=\s*"([a-zA-Z0-9\.;:\/\?&=\-_|\r|\n]{1,})")/isxmU However, it doesn't appear to be matching the following: <IMG SRC='http://www.mysite.com/pix/lens/mtf/CAEF8512L.gif'> How can I build it to match this as well?

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  • Count number of occurrences of a pattern in a file (even on same line)

    - by jrdioko
    When searching for number of occurrences of a string in a file, I generally use: grep pattern file | wc -l However, this only finds one occurrence per line, because of the way grep works. How can I search for the number of times a string appears in a file, regardless of whether they are on the same or different lines? Also, what if I'm searching for a regex pattern, not a simple string? How can I count those, or, even better, print each match on a new line?

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  • Python matching some characters into a string

    - by roaksoax
    Hi All I'm trying to extract/match data from a string using regular expression but I don't seem to get it. I wan't to extract the highlighted characters from the following string: /xubuntu/daily/current/lucid-alternate-**i386**.iso This should also work in case of: /xubuntu/daily/current/lucid-alternate-**amd64**.iso Thanks a lot for your help.

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  • PHP preg_match, need some help

    - by SoLoGHoST
    Can someone please help me with this preg_match if (preg_match('~[^A-Za-z0-9_\./\]~', $filepath)) // Show Error message. I need to match a possible filepath. So I need to check for double slashes, etc. Valid file path strings should look like this only: mydir/aFile.php or mydir/another_dir/anyfile.js So a slash at the beginning of this string should be checked also. Please help. Thanks :)

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  • C#:Photo matching

    - by Meko
    Hi.I created app that searches via blue tooth mac addresses and compare match them with data base. But I want to try not matching Mac Addresses , I want to make it like taking photo and matching with in database. For this what should I do? Where to start? I have an DB that includes all value for students with an Mac addresses I thing instead of Mac addresses I will add only photos.But Matching Two photo is hard way?It don`t have to be like FBI using :)

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  • Will making players pay a virtual currency before entering a match discourage them from playing?

    - by Bane
    I'm making a multiplayer match-making game, and by my current design, people will need to pay a small fee before joining a match. At the end of the match, the team that won will get the money. That will be a virtual currency, but still, will it discourage people to enter matches? I introduced it to make the matches matter more, because there's always a fear that you will loose your investments. I'm not talking about anything big here, but even a small amount might have a similar psychological effect as a bigger one.

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  • Code Sign error: The identity 'iPhone Developer: x Xxxxx' doesn't match any identity in any profile

    - by Cal
    I get this build error when I build my iPhone project to run on my device: Code Sign error: The identity 'iPhone Developer: x Xxxxx' doesn't match any identity in any profile My development code signing certificate expired so I got a new one. On my first attempt I created a new CSR and got the message above. The second time I reused my original CSR and got the same result. Another strange thing is the new certificate has an extra string with brackets after my name in the "common name" when I look at it using Keychain Access like this: iPhone Developer: x Xxxxx (3BDUAJYC9Q) My original certificate didn't have that. I have Xcode Version 3.1.3 Component versions Xcode IDE: 1191.0 Xcode Core: 1192.0 ToolSupport: 1186.0 Does anyone know how to solve this?

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  • RegEx match open tags except XHTML self-contained tags

    - by Jeff
    I need to match all of these opening tags: <p> <a href="foo"> But not these: <br /> <hr class="foo" /> I came up with this and wanted to make sure I've got it right. I am only capturing the a-z. <([a-z]+) *[^/]*?> I believe it says: Find a less-than, then Find (and capture) a-z one or more times, then Find zero or more spaces, then Find any character zero or more times, greedy, except /, then Find a greater-than Do I have that right? And more importantly, what do you think? =) EDIT: Hmm, which answer to mark as correct? For the record, ALL the answers are appreciated. Many thanks!

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  • regex to match trailing whitespace, but not lines which are entirely whitespace (indent placeholders

    - by Tim
    I've been trying to construct a ruby regex which matches trailing spaces - but not indentation placeholders - so I can gsub them out. I had this /\b[\t ]+$/ and it was working a treat until I realised it only works when the line ends are [a-zA-Z]. :-( So I evolved it into this /(?!^[\t ]+)[\t ]+$/ and it seems like it's getting better, but it still doesn't work properly. I've spent hours trying to get this to work to no avail. Please help. Here's some text test so it's easy to throw into Rubular, but the indent lines are getting stripped so it'll need a few spaces and/or tabs. Once lines 3 & 4 have spaces back in, it shouldn't match on lines 3-5, 7, 9. some test test some test test some other test (text) some other test (text) likely here{ dfdf } likely here{ dfdf } and this ; and this ; Alternatively, is there an simpler / more elegant way to do this?

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  • Regex to match the first file in a rar archive file set in Python

    - by mridang
    I need to uncompress all the files in a directory and for this I need to find the first file in the set. I'm currently doing this using a bunch of if statements and loops. Can i do this this using regex? Here's a list of files that i need to match: yes.rar yes.part1.rar yes.part01.rar yes.part001.rar yes.r01 yes.r001 These should NOT be matched: no.part2.rar no.part02.rar no.part002.rar no.part011.rar no.r002 no.r02 I found a similar regex on this thread but it seems that Python doesn't support varible length lookarounds. A single line regex would be complicated but I'll document it well and it's not a problem. It's just one of those problems you beat your heap up, over. Thanks in advance guys. :)

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  • case-insensitive regexp match on non-english text in perl cgi script

    - by jonny
    ok. I have list of catalog paths and need to filter out some of them. Match pattern comes in non-Unicode encoding. Tried following: require 5.004; use POSIX qw(locale_h); my $old_locale = setlocale(LC_ALL); setlocale(LC_ALL, "ru_RU.cp1251"); @{$data -> {doc_folder_rights}} = grep { $_->{doc_folder} =~/$_REQUEST{q}/i; # catalog path pattern in $_REQUEST{q} } @{$data -> {doc_folder_rights}}; setlocale(LC_ALL, $old_locale); What I need is case-insensitive regexp pattern matching when pattern contains russsian letters.

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  • Prepared statement help, Number of variables doesn't match number of parameters in prepared statement

    - by Sam Gabriel
    I'm getting this error : Number of variables doesn't match number of parameters in prepared statement every time I run this code: $dbh = new mysqli("localhost", "***", "***", "pics"); $stmt = $dbh->prepare("INSERT INTO comments (username, picture, comment) VALUES (?, ?, ?)"); $stmt->bind_Param('s', $username); $stmt->bind_Param('d', $picture); $stmt->bind_Param('s', $comment); $username=$_SESSION['username']; $picture=$_GET['id']; $comment=$_POST['comment']; $stmt->execute(); What's the problem?

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  • RegEx - Match optional groups

    - by Maurizio
    I know RE is not the best way to scrape HTMLs, but this is it... I have some something like: <td> Writing: <a href="creator.php?c=CCh">Carlo Chendi</a> Art: <a href="creator.php?c=LBo">Luciano Bottaro</a> </td> And I need to match the Writing and Art parts. But it is not said they're there and there could be other parts like Ink and Pencils... How do i do this ? I need to use pure Regex, no additional Python libs... Thanks !

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  • Vim syntax highlighting: make region only match on one line

    - by sixtyfootersdude
    Hello I have defined a custom file type with these lines: syn region SubSubtitle start=+=+ end=+=+ highlight SubSubtitle ctermbg=black ctermfg=DarkGrey syn region Subtitle start=+==+ end=+==+ highlight Subtitle ctermbg=black ctermfg=DarkMagenta syn region Title start=+===+ end=+===+ highlight Title ctermbg=black ctermfg=yellow syn region MasterTitle start=+====+ end=+====+ highlight MasterTitle cterm=bold term=bold ctermbg=black ctermfg=LightBlue I enclose all of my headings in this kind of document like this: ==== Biggest Heading ==== // this will be bold and light blue ===Sub heading === // this will be yellow bla bla bla // this will be normally formatted However right now when ever I use an equals sign in my code it thinks that it is a title. Is there anyway that I can force a match to be only on one line?

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  • no match for operator= using a std::vector

    - by Max
    I've got a class declared like this: class Level { private: std::vector<mapObject::MapObject> features; (...) }; and in one of its member functions I try to iterate through that vector like this: vector<mapObject::MapObject::iterator it; for(it=features.begin(); it<features.end(); it++) { /* loop code */ } This seems straightforward to me, but g++ gives me this error: src/Level.cpp:402: error: no match for ‘operator=’ in ‘it = ((const yarl::level::Level*)this)-yarl::level::Level::features.std::vector<_Tp, _Alloc::begin [with _Tp = yarl::mapObject::MapObject, _Alloc = std::allocator<yarl::mapObject::MapObject>]()’ /usr/include/c++/4.4/bits/stl_iterator.h:669: note: candidates are: __gnu_cxx::__normal_iterator<yarl::mapObject::MapObject*,std::vector & __gnu_cxx::__normal_iterator<yarl::mapObject::MapObject*,std::vector >::operator=(const __gnu_cxx::__normal_iterator<yarl::mapObject::MapObject*, ``std::vector<yarl::mapObject::MapObject, std::allocator<yarl::mapObject::MapObject> > >&) Anyone know why this is happening?

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  • Match beginning of words in Mysql for UTF8 strings

    - by ankimal
    Hi, I m trying to match beignning of words in a mysql column that stores strings as varchar. Unfortunately, REGEXP does not seem to work for UTF-8 strings as mentioned here So, select * from names where name REGEXP '[[:<:]]Aandre'; does not work if I have name like Foobar Aándreas However, select * from names where name like '%andre%' matches the row I need but does not guarantee beginning of words matches. Is it better to do the like and filter it out on the application side ? Any other solutions?

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  • Scala wont pattern match with java.lang.String and Case Class

    - by Stefan
    Hello fellow Scala Programmers I have been working with Scala for some month now, however I have a problem with some properly basic stuff, I am hoping you will help my out with it. case class PersonClass(name: String, age: Int) object CaseTester { def main(args:Array[String]) { val string = "hej" string match { case e:String => println(string) case PersonClass => println(string) } } } When I am doing like this I get error: pattern type is incompatible with expected type; found : object PersonClass required: java.lang.String case PersonClass = println(string) And if I then change the second line in the pattern matching to the following: case e:PersonClass => println(string) I then get the error: error: scrutinee is incompatible with pattern type; found : PersonClass required: java.lang.String case e:PersonClass = println(string) However if I change the string definition to the following it compiles fine in both cases. val string:AnyRef = "hej"

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  • Using Simple HTML Dom to match a string on the page

    - by Abs
    Hello all, How do I match and get the flash vars on a HTML page? I am using simple HTML dom element and I am able to narrow down to a div containing the text I need. <script type="text/javascript"> var s1 = new SWFObject("jw4.4/player.swf", "player", "400", "50", "9"); s1.addParam("allowfullscreen", "true"); s1.addParam('allowscriptaccess','always'); s1.addVariable("width","400"); s1.addVariable("height","50"); s1.addVariable("overstretch", "false"); s1.addParam('flashvars',"this_id=/tg&amp;autostart=true"); s1.write("container"); How do I get the value of this_id, so I want to return /tg? What would I put in find? Or do i have to use something else? $html = file_get_html("$url"); $file_path = $html->find('this_id=/'); Thanks all for any help

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