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  • Java Graphics not displaying on successive function calls, why?

    - by primehunter326
    Hi, I'm making a visualization for a BST implementation (I posted another question about it the other day). I've created a GUI which displays the viewing area and buttons. I've added code to the BST implementation to recursively traverse the tree, the function takes in coordinates along with the Graphics object which are initially passed in by the main GUI class. My idea was that I'd just have this function re-draw the tree after every update (add, delete, etc...), drawing a rectangle over everything first to "refresh" the viewing area. This also means I could alter the BST implementation (i.e by adding a balance operation) and it wouldn't affect the visualization. The issue I'm having is that the draw function only works the first time it is called, after that it doesn't display anything. I guess I don't fully understand how the Graphics object works since it doesn't behave the way I'd expect it to when getting passed/called from different functions. I know the getGraphics function has something to do with it. Relevant code: private void draw(){ Graphics g = vPanel.getGraphics(); tree.drawTree(g,ORIGIN,ORIGIN); } vPanel is what I'm drawing on private void drawTree(Graphics g, BinaryNode<AnyType> n, int x, int y){ if( n != null ){ drawTree(g, n.left, x-10,y+10 ); if(n.selected){ g.setColor(Color.blue); } else{ g.setColor(Color.gray); } g.fillOval(x,y,20,20); g.setColor(Color.black); g.drawString(n.element.toString(),x,y); drawTree(g,n.right, x+10,y+10); } } It is passed the root node when it is called by the public function. Do I have to have: Graphics g = vPanel.getGraphics(); ...within the drawTree function? This doesn't make sense!! Thanks for your help.

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  • Preprocessor #define vs. function pointer - best practice?

    - by Dustin
    I recently started a small personal project (RGB value to BGR value conversion program) in C, and I realised that a function that converts from RGB to BGR can not only perform the conversion but also the inversion. Obviously that means I don't really need two functions rgb2bgr and bgr2rgb. However, does it matter whether I use a function pointer instead of a macro? For example: int rgb2bgr (const int rgb); /* * Should I do this because it allows the compiler to issue * appropriate error messages using the proper function name, * not to mention possible debugging benefits? */ int (*bgr2rgb) (const int bgr) = rgb2bgr; /* * Or should I do this since it is merely a convenience * and they're really the same function anyway? */ #define bgr2rgb(bgr) (rgb2bgr (bgr)) I'm not necessarily looking for a change in execution efficiency as it's more of a subjective question out of curiosity. I am well aware of the fact that type safety is neither lost nor gained using either method. Would the function pointer merely be a convenience or are there more practical benefits to be gained of which I am unaware?

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  • C++ class derivation and superconstructor confusion

    - by LukeN
    Hey, in a tutorial C++ code, I found this particular piece of confusion: PlasmaTutorial1::PlasmaTutorial1(QObject *parent, const QVariantList &args) : Plasma::Applet(parent, args), // <- Okay, Plasma = namespace, Applet = class m_svg(this), // <- A member function of class "Applet"? m_icon("document") // <- ditto? { m_svg.setImagePath("widgets/background"); // this will get us the standard applet background, for free! setBackgroundHints(DefaultBackground); resize(200, 200); } I'm not new to object oriented programming, so class derivation and super-classes are nothing complicated, but this syntax here got me confused. The header file defines the class like this: class PlasmaTutorial1 : public Plasma::Applet { Similar to above, namespace Plasma and class Applet. But what's the public doing there? I fear that I already know the concept but don't grasp the C++ syntax/way of doing it. In this question I picked up that these are called "superconstructors", at least that's what stuck in my memory, but I don't get this to the full extend. If we glance back at the first snippet, we see Constructor::Class(...) : NS::SuperClass(...), all fine 'till here. But what are m_svg(this), m_icon("document") doing there? Is this some kind of method to make these particular functions known to the derivated class? Is this part of C++ basics or more immediate? While I'm not completly lost in C++, I feel much more at home in C :) Most of the OOP I have done so far was done in D, Ruby or Python. For example in D I would just define class MyClass : MySuperClass, override what I needed to and call the super class' constructor if I'd need to.

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  • PHP sleep() excution sequence while echoeing.

    - by Babiker
    I have the following: echo time()."<br>"; sleep(1); echo time()."<br>"; sleep(1); echo time()."<br>"; I wrote the preceding code with intention to echo time()."<br>" ln 1,echo time()."<br>" ln 4, wait a final second and then echo the final time()."<br>". Altough the time bieng echoed is correct when it comes to the intervals between time(), all echo functions are echoeing after the total of the waiting period/parameters in each sleep function. This is how the script runs: Excutes. Waits 2 secons. echoes 1275540664 1275540665 1275540666 Notice the correct incrementation in time() being echoed. My question is why is it not behaving like expected to where it echoes, waits a second, echoes again, waits one final second and then echos the last parameter? I know my question is a little confusing due to my wording, but i will try my hardest to answer any comments regarding this, thanks.

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  • variables in abstract classes C++

    - by wyatt
    I have an abstract class CommandPath, and a number of derived classes as below: class CommandPath { public: virtual CommandResponse handleCommand(std::string) = 0; virtual CommandResponse execute() = 0; virtual ~CommandPath() {} }; class GetTimeCommandPath : public CommandPath { int stage; public: GetTimeCommandPath() : stage(0) {} CommandResponse handleCommand(std::string); CommandResponse execute(); }; All of the derived classes have the member variable 'stage'. I want to build a function into all of them which manipulates 'stage' in the same way, so rather than defining it many times I thought I'd build it into the parent class. I moved 'stage' from the private sections of all of the derived classes into the protected section of CommandPath, and added the function as follows: class CommandPath { protected: int stage; public: virtual CommandResponse handleCommand(std::string) = 0; virtual CommandResponse execute() = 0; std::string confirmCommand(std::string, int, int, std::string, std::string); virtual ~CommandPath() {} }; class GetTimeCommandPath : public CommandPath { public: GetTimeCommandPath() : stage(0) {} CommandResponse handleCommand(std::string); CommandResponse execute(); }; Now my compiler tells me for the constructor lines that none of the derived classes have a member 'stage'. I was under the impression that protected members are visible to derived classes? The constructor is the same in all classes, so I suppose I could move it to the parent class, but I'm more concerned about finding out why the derived classes aren't able to access the variable. Also, since previously I've only used the parent class for pure virtual functions, I wanted to confirm that this is the way to go about adding a function to be inherited by all derived classes.

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  • C++ and Dependency Injection in unit testing

    - by lhumongous
    Suppose I have a C++ class like so: class A { public: A() { } void SetNewB( const B& _b ) { m_B = _b; } private: B m_B; } In order to unit test something like this, I would have to break A's dependency on B. Since class A holds onto an actual object and not a pointer, I would have to refactor this code to take a pointer. Additionally, I would need to create a parent interface class for B so I can pass in my own fake of B when I test SetNewB. In this case, doesn't unit testing with dependency injection further complicate the existing code? If I make B a pointer, I'm now introducing heap allocation, and some piece of code is now responsible for cleaning it up (unless I use ref counted pointers). Additionally, if B is a rather trivial class with only a couple of member variables and functions, why introduce a whole new interface for it instead of just testing with an instance of B? I suppose you could make the argument that it would be easier to refactor A by using an interface. But are there some cases where two classes might need to be tightly coupled?

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  • Is there a way to receive data as unsigned char over UDP on Qt?

    - by user269037
    I need to send floating point numbers using a UDP connection to a Qt application. Now in Qt the only function available is qint64 readDatagram ( char * data, qint64 maxSize, QHostAddress * address = 0, quint16 * port = 0 ) which accepts data in the form of signed character buffer. I can convert my float into a string and send it but it will obviously not be very efficient converting a 4 byte float into a much longer sized character buffer. I got hold of these 2 functions to convert a 4 byte float into an unsinged 32 bit integer to transfer over network which works fine for a simple C++ UDP program but for Qt I need to receive the data as unsigned char. Is it possible to avoid converting the floatinf point data into a string and then sending it? uint32_t htonf(float f) { uint32_t p; uint32_t sign; if (f < 0) { sign = 1; f = -f; } else { sign = 0; } p = ((((uint32_t)f)&0x7fff)<<16) | (sign<<31); // Whole part and sign. p |= (uint32_t)(((f - (int)f) * 65536.0f))&0xffff; // Fraction. return p; } float ntohf(uint32_t p) { float f = ((p>>16)&0x7fff); // Whole part. f += (p&0xffff) / 65536.0f; // Fraction. if (((p>>31)&0x1) == 0x1) { f = -f; } // Sign bit set. return f; }

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  • Making a visual bar timer for iPhone

    - by Ohmnastrum
    I've looked up all results for progress bars and changing the width of an image but it only refers to scaling, and the progress bars aren't customizable so that they fit other functions or design schemes... unless I missed that part. I'm trying to make a bar timer that crops off of the right over a period of time. I tried using an NStimer so that it would subtract from a value each time its function is called. the Timerbar function gets called as a result of another timer invalidating and it works. What doesn't work is that the width isn't changing just the position. further more I keep getting values like Inf and 0 for power and pwrBarWidth I was sure that the changes would occur when Mult was plugged into the equation. it seems like casting mult as an int is causing problems but i'm not sure exactly how. int pwrBarMaxWidth = 137; int pwrBarWidth 0; int limit = 1; float mult; float power = 0; -(void) Timerbar:(NSTimer *)barTimer { if(!waitForPlayer) { [barTimer invalidate]; } if(mult > 0.0) { mult -= 0.001 * [colorChoices count]; if(mult < 0.0) { mult = 0.0; } } power = (mult * 10) / pwrBarMaxWidth; pwrBarWidth = (int)power % limit; // causes the bar to repeat after it reaches a certain point //At this point however the variable Power is always "inf" and PwrBarWidth is always 0. [powerBar setBounds:CGRectMake(powerBar.frame.origin.x, powerBar.frame.origin.y,pwrBarWidth,20)]; //supposed to change the crop of the bar } Any reason why I'm getting inf as a value for power, 0 as a value for pwrBarWidth, and the bar itself isn't cropping? if this question is a bit vague i'll provide more information as needed.

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  • C++ creating generic template function specialisations

    - by Fire Lancer
    I know how to specialise a template function, however what I want to do here is specialise a function for all types which have a given method, eg: template<typename T> void foo(){...} template<typename T, if_exists(T::bar)>void foo(){...}//always use this one if the method T::bar exists T::bar in my classes is static and has different return types. I tried doing this by having an empty base class ("class HasBar{};") for my classes to derive from and using boost::enable_if with boost::is_base_of on my "specialised" version. However the problem then is that for classes that do have bar, the compiler cant resolve which one to use :(. template<typename T> typename boost::enable_if<boost::is_base_of(HasBar, T>, void>::type f() {...} I know that I could use boost::disable_if on the "normal" version, however I do not control the normal version (its provided by a third party library and its expected for specialisations to be made, I just don't really want to make explicit specialisations for my 20 or so classes), nor do I have that much control over the code using these functions, just the classes implementing T::bar and the function that uses it. Is there some way to tell the compiler to "always use this version if possible no matter what" without altering the other versions?

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  • Jquery animate negative top and back to 0 - starts messing up after 3rd click

    - by Daniel Takyi
    The site in question is this one: http://www.pickmixmagazine.com/wordpress/ When you click on one of the posts (any of the boxes) an iframe will slide down from the top with the content in it. Once the "Home" button in the top left hand corner of the iframe is clicked, the iframe slides back up. This works perfectly the first 2 times, on the 3rd click on of a post, the content will slide down, but when the home button is clicked, the content slides back up normally but once it has slid all the way up to the position it should be in, the iframe drops straight back down to where it was before the home button was clicked, I click it again and then it works. Here is the code I've used for both sliding up and sliding down functions: /* slide down function */ var $div = $('iframe.primary'); var height = $div.height(); var width = parseInt($div.width()); $div.css({ height : height }); $div.css('top', -($div.width())); $('.post').click(function () { $('iframe.primary').load(function(){ $div.animate({ top: 0 }, { duration: 1000 }); }) return false; }); /* slide Up function */ var elm = parent.document.getElementsByTagName('iframe')[0]; var jelm = $(elm);//convert to jQuery Element var htmlElm = jelm[0];//convert to HTML Element $('.homebtn').click(function(){ $(elm).animate({ top: -height }, { duration: 1000 }); return false; })

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  • Tree iterator, can you optimize this any further?

    - by Ron
    As a follow up to my original question about a small piece of this code I decided to ask a follow up to see if you can do better then what we came up with so far. The code below iterates over a binary tree (left/right = child/next ). I do believe there is room for one less conditional in here (the down boolean). The fastest answer wins! The cnt statement can be multiple statements so lets make sure this appears only once The child() and next() member functions are about 30x as slow as the hasChild() and hasNext() operations. Keep it iterative <-- dropped this requirement as the recursive solution presented was faster. This is C++ code visit order of the nodes must stay as they are in the example below. ( hit parents first then the children then the 'next' nodes). BaseNodePtr is a boost::shared_ptr as thus assignments are slow, avoid any temporary BaseNodePtr variables. Currently this code takes 5897ms to visit 62200000 nodes in a test tree, calling this function 200,000 times. void processTree (BaseNodePtr current, unsigned int & cnt ) { bool down = true; while ( true ) { if ( down ) { while (true) { cnt++; // this can/will be multiple statesments if (!current->hasChild()) break; current = current->child(); } } if ( current->hasNext() ) { down = true; current = current->next(); } else { down = false; current = current->parent(); if (!current) return; // done. } } }

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  • using threads in menu options

    - by vbNewbie
    I have an app that has a console menu with 2/3 selections. One process involves uploading a file and performing a lengthy search process on its contents, whilst another process involves SQL queries and is an interactive process with the user. I wish to use threads to allow one process to run and the menu to offer the option for the second process to run. However you cannot run the first process twice. I have created threads and corrected some compilation errors but the threading options are not working correctly. Any help appreciated. main... Dim tm As Thread = New Thread(AddressOf loadFile) Dim ts As Thread = New Thread(AddressOf reports) .... While Not response.Equals("3") Try Console.Write("Enter choice: ") response = Console.ReadLine() Console.WriteLine() If response.Equals("1") Then Console.WriteLine("Thread 1 doing work") tm.SetApartmentState(ApartmentState.STA) tm.IsBackground = True tm.Start() response = String.Empty ElseIf response.Equals("2") Then Console.WriteLine("Starting a second Thread") ts.Start() response = String.Empty End If ts.Join() tm.Join() Catch ex As Exception errormessage = ex.Message End Try End While I realize that a form based will be easier to implement with perhaps just calling different forms to handle the processes.But I really dont have that option now since the console app will be added to api later. But here are my two processes from the menu functions. Also not sure what to do with the boolean variabel again as suggested below. Private Sub LoadFile() Dim dialog As New OpenFileDialog Dim response1 As String = Nothing Dim filepath As String = Environment.GetFolderPath(Environment.SpecialFolder.MyDocuments) dialog.InitialDirectory = filepath If dialog.ShowDialog() = DialogResult.OK Then fileName = dialog.FileName ElseIf DialogResult.Cancel Then Exit Sub End If Console.ResetColor() Console.Write("Begin Search -- Discovery Search, y or n? ") response1 = Console.ReadLine() If response1 = "y" Then Search() ElseIf response1 = "n" Then Console.Clear() main() End If isRunning = False End Sub and the second one Private Shared Sub report() Dim rptGen As New SearchBlogDiscovery.rptGeneration Console.WriteLine("Tread Process started") rptGen.main() Console.WriteLine("Thread Process ended") isRunning = False End Sub

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  • Simple jQuery syntax help, don't know where I've gone wrong

    - by Jascination
    I'm having trouble with a jQuery code at the moment, I know WHERE the problem lies, but I don't know what the problem is exactly. Probably very basic, but I'm new to this. You can see a (non)working fiddle here: http://www.jsfiddle.net/CvZeQ/ Basically I want to set different .click function based on whatever is selected (I have 5 image maps, each with a different #mapname, and want each to pertain to a different variable (answer1, answer2, answer3...) so as to store the selected 'answer' for each map.) Here is the code I'm using for one of the maps: $(window).load(function(){ //Get cookies when page loaded var useranswers=$.cookie('survery'); useranswers= JSON.parse (useranswers); // do something with previous answers //#shape functions $('#shape area').hover( function(e){ $('#'+ this.alt).addClass('hover'); }, function(e){ $('#'+ this.alt).removeClass('hover'); } ).click( function(e){ $('img.selected-region').removeClass('selected-region'); }, function(e){ $('#'+ this.alt).addClass('selected-region'); }, function(e){ var answer1 = $(this).attr("class"); }); }); I know the problem lies somewhere with the .click function, but I'm not entirely sure what I've done wrong. Any help would be greatly appreciated.

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  • PHP: Extract direct sub directory from path string

    - by Nebs
    I need to extract the name of the direct sub directory from a full path string. For example, say we have: $str = "dir1/dir2/dir3/dir4/filename.ext"; $dir = "dir1/dir2"; Then the name of the sub-directory in the $str path relative to $dir would be "dir3". Note that $dir never has '/' at the ends. So the function should be: $subdir = getsubdir($str,$dir); echo $subdir; // Outputs "dir3" If $dir="dir1" then the output would be "dir2". If $dir="dir1/dir2/dir3/dir4" then the output would be "" (empty). If $dir="" then the output would be "dir1". Etc.. Currently this is what I have, and it works (as far as I've tested it). I'm just wondering if there's a simpler way since I find I'm using a lot of string functions. Maybe there's some magic regexp to do this in one line? (I'm not too good with regexp unfortunately). function getsubdir($str,$dir) { // Remove the filename $str = dirname($str); // Remove the $dir if(!empty($dir)){ $str = str_replace($dir,"",$str); } // Remove the leading '/' if there is one $si = stripos($str,"/"); if($si == 0){ $str = substr($str,1); } // Remove everything after the subdir (if there is anything) $lastpart = strchr($str,"/"); $str = str_replace($lastpart,"",$str); return $str; } As you can see, it's a little hacky in order to handle some odd cases (no '/' in input, empty input, etc). I hope all that made sense. Any help/suggestions are welcome.

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  • Complicated API issue with calling assemblies dynamically?

    - by Stefanos Tses
    I have an interesting challenge that I'm wondering if anyone here can give me some direction. I'm writing a .Net windows forms application that runs on a network and uses an SQL Server to save and pull data. I want to offer a mini "plugin" API, where developers can build their own assemblies and implement a specific interface (IDataManipulate). These assemblies then can be used by my application to call the interface functions and do something. I can create assemblies using my API, copy the file to a folder in my local hard drive and configure my application to use Reflection to call a specific function from the implemented interface (IDataManipulate.Execute). The problem: Since the application will be installed in multiple workstations in the network, is impossible to copy the plugin dlls the users will create to each machine. Solutions I tried: Solution 1 Copy the API dll to a network share. Problem: Requires AllowPartiallyTrustedCallersAttribute, which requires .Net singing, which I can't force from my users. Solution 2 (preferred) Serialize the dll object, save it to the database, deserialize it and call IDataManipulate.Execute. Problem: After deserialization, I try cast it to a IDataManipulate object but returns an error looking for the actual dll file. Solution 3 Save the dll bytes as byte[] to the database and recreate the dll at the local PC every time the user starts my application. Problem: Dll may have dependencies, which I don't know if I can detect. Any suggestions will be greatly appreciated. Thanks

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  • calling constructor of the class in the destructor of the same class

    - by dicaprio
    Experts !! I know this question is one of the lousy one , but still I dared to open my mind , hoping I would learn from all. I was trying some examples as part of my routine and did this horrible thing, I called the constructor of the class from destructor of the same class. I don't really know if this is ever required in real programming , I cant think of any real time scenarios where we really need to call functions/CTOR in our destructor. Usually , destructor is meant for cleaning up. If my understanding is correct, why the compiler doesn't complain ? Is this because it is valid for some good reasons ? If so what are they ? I tried on Sun Forte, g++ and VC++ compiler and none of them complain about it. using namespace std; class test{ public: test(){ cout<<"CTOR"<<endl; } ~test() {cout<<"DTOR"<<endl; test(); }};

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  • C++: Constructor/destructor unresolved when not inline?

    - by Anamon
    In a plugin-based C++ project, I have a TmpClass that is used to exchange data between the main application and the plugins. Therefore the respective TmpClass.h is included in the abstract plugin interface class that is included by the main application project, and implemented by each plugin. As the plugins work on STL vectors of TmpClass instances, there needs to be a default constructor and destructor for the TmpClass. I had declared these in TmpClass.h: class TmpClass { TmpClass(); ~TmpClass(); } and implemented them in TmpClass.cpp. TmpClass::~TmpClass() {} TmpClass::TmpClass() {} However, when compiling plugins this leads to the linker complaining about two unresolved externals - the default constructor and destructor of TmpClass as required by the std::vector<TmpClass> template instantiation - even though all other functions I declare in TmpClass.h and implement in TmpClass.cpp work. As soon as I remove the (empty) default constructor and destructor from the .cpp file and inline them into the class declaration in the .h file, the plugins compile and work. Why is it that the default constructor and destructor have to be inline for this code to compile? Why does it even maatter? (I'm using MSVC++8).

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  • Recommended approach for error handling with PHP and MYSQL

    - by iama
    I am trying to capture database (MYSQL) errors in my PHP web application. Currently, I see that there are functions like mysqli_error(), mysqli_errno() for capturing the last occurred error. However, this still requires me to check for error occurrence using repeated if/else statements in my php code. You may check my code below to see what I mean. Is there a better approach to doing this? (or) Should I write my own code to raise exceptions and catch them in one single place? What is the recommended approach? Also, does PDO raise exceptions? Thanks. function db_userexists($name, $pwd, &$dbErr) { $bUserExists = false; $uid = 0; $dbErr = ''; $db = new mysqli(SERVER, USER, PASSWORD, DB); if (!mysqli_connect_errno()) { $query = "select uid from user where uname = ? and pwd = ?"; $stmt = $db->prepare($query); if ($stmt) { if ($stmt->bind_param("ss", $name, $pwd)) { if ($stmt->bind_result($uid)) { if ($stmt->execute()) { if ($stmt->fetch()) { if ($uid) $bUserExists = true; } } } } if (!$bUserExists) $dbErr = $db->error(); $stmt->close(); } if (!$bUserExists) $dbErr = $db->error(); $db->close(); } else { $dbErr = mysqli_connect_error(); } return $bUserExists; }

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  • Why should I abstract my data layer?

    - by Gazillion
    OOP principles were difficult for me to grasp because for some reason I could never apply them to web development. As I developed more and more projects I started understanding how some parts of my code could use certain design patterns to make them easier to read, reuse, and maintain so I started to use it more and more. The one thing I still can't quite comprehend is why I should abstract my data layer. Basically if I need to print a list of items stored in my DB to the browser I do something along the lines of: $sql = 'SELECT * FROM table WHERE type = "type1"';' $result = mysql_query($sql); while($row = mysql_fetch_assoc($result)) { echo '<li>'.$row['name'].'</li>'; } I'm reading all these How-Tos or articles preaching about the greatness of PDO but I don't understand why. I don't seem to be saving any LoCs and I don't see how it would be more reusable because all the functions that I call above just seem to be encapsulated in a class but do the exact same thing. The only advantage I'm seeing to PDO are prepared statements. I'm not saying data abstraction is a bad thing, I'm asking these questions because I'm trying to design my current classes correctly and they need to connect to a DB so I figured I'd do this the right way. Maybe I'm just reading bad articles on the subject :) I would really appreciate any advice, links, or concrete real-life examples on the subject!

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  • Database source control with Oracle

    - by borjab
    I have been looking during hours for a way to check in a database into source control. My first idea was a program for calculating database diffs and ask all the developers to imlement their changes as new diff scripts. Now, I find that if I can dump a database into a file I cound check it in and use it as just antother type of file. The main conditions are: Works for Oracle 9R2 Human readable so we can use diff to see the diferences. (.dmp files doesn't seem readable) All tables in a batch. We have more than 200 tables. It stores BOTH STRUCTURE AND DATA It supports CLOB and RAW Types. It stores Procedures, Packages and its bodies, functions, tables, views, indexes, contraints, Secuences and synonims. It can be turned into an executable script to rebuild the database into a clean machine. Not limitated to really small databases (Supports least 200.000 rows) It is not easy. I have downloaded a lot of demos that does fail in one way or another. EDIT: I wouldn't mind alternatives aproaches provided that they allows us to check a working system against our release DATABASE STRUCTURE AND OBJECTS + DATA in a bath mode. By the way. Our project has been developed for years. Some aproaches can be easily implemented when you make a fresh start but seem hard at this point. EDIT: To understand better the problem let's say that some users can sometimes do changes to the config data in the production eviroment. Or developers might create a new field or alter a view without notice in the realease branch. I need to be aware of this changes or it will be complicated to merge the changes into production.

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  • R optimization: How can I avoid a for loop in this situation?

    - by chrisamiller
    I'm trying to do a simple genomic track intersection in R, and running into major performance problems, probably related to my use of for loops. In this situation, I have pre-defined windows at intervals of 100bp and I'm trying to calculate how much of each window is covered by the annotations in mylist. Graphically, it looks something like this: 0 100 200 300 400 500 600 windows: |-----|-----|-----|-----|-----|-----| mylist: |-| |-----------| So I wrote some code to do just that, but it's fairly slow and has become a bottleneck in my code: ##window for each 100-bp segment windows <- numeric(6) ##second track mylist = vector("list") mylist[[1]] = c(1,20) mylist[[2]] = c(120,320) ##do the intersection for(i in 1:length(mylist)){ st <- floor(mylist[[i]][1]/100)+1 sp <- floor(mylist[[i]][2]/100)+1 for(j in st:sp){ b <- max((j-1)*100, mylist[[i]][1]) e <- min(j*100, mylist[[i]][2]) windows[j] <- windows[j] + e - b + 1 } } print(windows) [1] 20 81 101 21 0 0 Naturally, this is being used on data sets that are much larger than the example I provide here. Through some profiling, I can see that the bottleneck is in the for loops, but my clumsy attempt to vectorize it using *apply functions resulted in code that runs an order of magnitude more slowly. I suppose I could write something in C, but I'd like to avoid that if possible. Can anyone suggest another approach that will speed this calculation up?

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  • How to convert a lambda to an std::function using templates

    - by retep998
    Basically, what I want to be able to do is take a lambda with any number of any type of parameters and convert it to an std::function. I've tried the following and neither method works. std::function([](){});//Complains that std::function is missing template parameters template <typename T> void foo(function<T> f){} foo([](){});//Complains that it cannot find a matching candidate The following code does work however, but it is not what I want because it requires explicitly stating the template parameters which does not work for generic code. std::function<void()>([](){}); I've been mucking around with functions and templates all evening and I just can't figure this out, so any help would be much appreciated. As mentioned in a comment, the reason I'm trying to do this is because I'm trying to implement currying in C++ using variadic templates. Unfortunately, this fails horribly when using lambdas. For example, I can pass a standard function using a function pointer. template <typename R, typename...A> void foo(R (*f)(A...)) {} void bar() {} int main() { foo(bar); } However, I can't figure out how to pass a lambda to such a variadic function. Why I'm interested in converting a generic lambda into an std::function is because I can do the following, but it ends up requiring that I explicitly state the template parameters to std::function which is what I am trying to avoid. template <typename R, typename...A> void foo(std::function<R(A...)>) {} int main() { foo(std::function<void()>([](){})); }

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  • LINQ to SQL: NOTing a prebuilt expression

    - by ck
    I'm building a library of functions for one of my core L2S classes, all of which return a bool to allow checking for certain situations. Example: Expression<Func<Account, bool>> IsSomethingX = a => a.AccountSupplementary != null && a.AccountSupplementary.SomethingXFlag != null && a.AccountSupplementary.SomethingXFlag.Value; Now to query where this is not true, I CAN'T do this: var myAccounts= context.Accounts .Where(!IsSomethingX); // does not compile However, using the syntax from the PredicateBuilder class, I've come up with this: public static IQueryable<T> WhereNot<T>(this IQueryable<T> items, Expression<Func<T, bool>> expr1) { var invokedExpr = Expression.Invoke(expr1, expr1.Parameters.Cast<Expression>()); return items.Where(Expression.Lambda<Func<T, bool>> (Expression.Not(invokedExpr), expr1.Parameters)); } var myAccounts= context.Accounts .WhereNot(IsSomethingX); // does compile which actually produces the correct SQL. Does this look like a good solution, and is there anything I need to be aware of that might cause me problems in future?

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  • Can Drupal Taxonomy module be used to categorize court records and briefs?

    - by DKinzer
    I'm currently working on project that involves moving a database of documents for court records and briefs over to a Drupal environment. One of the problems that we are faced with is how to index these documents. In our court district, records and briefs all have a docket number which is assigned to a case. The interesting thing is that when multiple cases merge the docket numbers associated to the case become synonymous: Case 1, documents have Doceket No. A Case 2, documents have Docket No. B If case Cases 1 and Case 2 merge, then Docket No. A = Docket No. B My first inclination is to create Docket Vocabulary and have the terms of this Taxonomy be the docket numbers. I am hoping to take advantage of the fact that terms can be synonymous. I understand that there are several functions in the Taxonomy module that I may be able to take advantage, of including: taxonomy_get_synonyms taxonomy_get_related But I'm having problems convincing my collegues that this is the way to go, and frankly I'm not certain it's the right solution either. If anyone has had a similar issue and can offer some guidance as to how to move forward, I would greatly appreciate it. Thanks! D I've asked a related question (which I would also need to answer in order to move forward with this solution): http://stackoverflow.com/questions/2656247/can-drupal-terms-in-different-taxonomies-be-synonymous

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  • Flowcharting functional programming languages

    - by Sadface
    Flowcharting. This ancient old practice that's been in use for over 1000 years now, being forced upon us poor students, without any usefulness (or so do I think). It might work well with imperative, sequentially running languages, but what about my beloved functional programming? Sadly, I'm forced to create a flow chart for my programm (that is written in Haskell). I imagine it being easy for something like this: main :: IO () main = do someInput <- getLine let upped = map toUpper someInput putStrLn upped Which is just 3 sequenced steps, fetching data, uppercasing it, outputting it. Things look worse this time: main :: IO () main = do someInput <- fmap toUpper getLine putStrLn someInput Or like this: main :: IO () main = interact (map toUpper) Okay, that was IO, you can handle that like an imperative language. What about pure functions? An actual example: onlyMatching :: String -> [FilePath] -> [FilePath] onlyMatching ext = filter f where f name = lower ('.' : ext) == (lower . takeExtension $ name) lower = map toLower How would you flowchart that last one?

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