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  • Fastest way to generate delimited string from 1d numpy array

    - by Abiel
    I have a program which needs to turn many large one-dimensional numpy arrays of floats into delimited strings. I am finding this operation quite slow relative to the mathematical operations in my program and am wondering if there is a way to speed it up. For example, consider the following loop, which takes 100,000 random numbers in a numpy array and joins each array into a comma-delimited string. import numpy as np x = np.random.randn(100000) for i in range(100): ",".join(map(str, x)) This loop takes about 20 seconds to complete (total, not each cycle). In contrast, consider that 100 cycles of something like elementwise multiplication (x*x) would take than one 1/10 of a second to complete. Clearly the string join operation creates a large performance bottleneck; in my actual application it will dominate total runtime. This makes me wonder, is there a faster way than ",".join(map(str, x))? Since map() is where almost all the processing time occurs, this comes down to the question of whether there a faster to way convert a very large number of numbers to strings.

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  • Graphing a line and scatter points using Matplotlib?

    - by Patrick O'Doherty
    Hi guys I'm using matplotlib at the moment to try and visualise some data I am working on. I'm trying to plot around 6500 points and the line y = x on the same graph but am having some trouble in doing so. I can only seem to get the points to render and not the line itself. I know matplotlib doesn't plot equations as such rather just a set of points so I'm trying to use and identical set of points for x and y co-ordinates to produce the line. The following is my code from matplotlib import pyplot import numpy from pymongo import * class Store(object): """docstring for Store""" def __init__(self): super(Store, self).__init__() c = Connection() ucd = c.ucd self.tweets = ucd.tweets def fetch(self): x = [] y = [] for t in self.tweets.find(): x.append(t['positive']) y.append(t['negative']) return [x,y] if __name__ == '__main__': c = Store() array = c.fetch() t = numpy.arange(0., 0.03, 1) pyplot.plot(array[0], array[1], 'ro', t, t, 'b--') pyplot.show() Any suggestions would be appreciated, Patrick

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  • Convert list to sequence of variables

    - by wtzolt
    I was wondering if this was possible... I have a sequence of variables that have to be assigned to a do.something (a, b) a and b variables accordingly. Something like this: # # Have a list of sequenced variables. list = 2:90 , 1:140 , 3:-40 , 4:60 # # "Template" on where to assign the variables from the list. do.something (a,b) # # Assign the variables from the list in a sequence with possibility of "in between" functions like print and time.sleep() added. do.something (2,90) time.sleep(1) print "Did something (%d,%d)" % (# # vars from list?) do.something (1,140) time.sleep(1) print "Did something (%d,%d)" % (# # vars from list?) do.something (3,-40) time.sleep(1) print "Did something (%d,%d)" % (# # vars from list?) do.something (4,60) time.sleep(1) print "Did something (%d,%d)" % (# # vars from list?) Any ideas?

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  • How to make socket.listen(1) work for some time and then continue rest of code???

    - by Rami Jarrar
    I'm making server that make a tcp socket and work over port range, with each port it will listen on that port for some time, then continue the rest of the code. like this:: import socket sck = socket.socket(socket.AF_INET, socket.SOCK_STREAM) sck.setsockopt(socket.SOL_SOCKET, socket.SO_REUSEADDR, 1) msg ='' ports = [x for x in xrange(4000)] while True: try: for i in ports: sck.bind(('',i)) ## sck.listen(1) ## make it just for some time and then continue this ## if there a connection do this conn, addr = sck.accept() msg = conn.recv(2048) ## do something ##if no connection continue the for loop conn.close() except KeyboardInterrupt: exit() so how i could make sck.listen(1) work just for some time ??

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  • Google App Engine + Form Validation

    - by Iwona
    Hi, I would like to do google app engine form validation but I dont know how to do it? I tried like this: from google.appengine.ext.db import djangoforms from django import newforms as forms class SurveyForm(forms.Form): occupations_choices = ( ('1', ""), ('2', "Undergraduate student"), ('3', "Postgraduate student (MSc)"), ('4', "Postgraduate student (PhD)"), ('5', "Lab assistant"), ('6', "Technician"), ('7', "Lecturer"), ('8', "Other" ) ) howreach_choices = ( ('1', ""), ('2', "Typed the URL directly"), ('3', "Site is bookmarked"), ('4', "A search engine"), ('5', "A link from another site"), ('6', "From a book"), ('7', "Other") ) boxes_choices = ( ("des", "Website Design"), ("svr", "Web Server Administration"), ("com", "Electronic Commerce"), ("mkt", "Web Marketing/Advertising"), ("edu", "Web-Related Education") ) name = forms.CharField(label='Name', max_length=100, required=True) email = forms.EmailField(label='Your Email Address:') occupations = forms.ChoiceField(choices=occupations_choices, label='What is your occupation?') howreach = forms.ChoiceField(choices=howreach_choices, label='How did you reach this site?') # radio buttons 1-5 rating = forms.ChoiceField(choices=range(1,6), label='What is your occupation?', widget=forms.RadioSelect) boxes = forms.ChoiceField(choices=boxes_choices, label='Are you involved in any of the following? (check all that apply):', widget=forms.CheckboxInput) comment = forms.CharField(widget=forms.Textarea, required=False) And I wanted to display it like this: template_values = { 'url' : url, 'url_linktext' : url_linktext, 'userName' : userName, 'item1' : SurveyForm() } And I have this error message: Traceback (most recent call last): File "C:\Program Files\Google\google_appengine\google\appengine\ext\webapp_init_.py", line 515, in call handler.get(*groups) File "C:\Program Files\Google\google_appengine\demos\b00213576\main.py", line 144, in get self.response.out.write(template.render(path, template_values)) File "C:\Program Files\Google\google_appengine\google\appengine\ext\webapp\template.py", line 143, in render return t.render(Context(template_dict)) File "C:\Program Files\Google\google_appengine\google\appengine\ext\webapp\template.py", line 183, in wrap_render return orig_render(context) File "C:\Program Files\Google\google_appengine\lib\django\django\template_init_.py", line 168, in render return self.nodelist.render(context) File "C:\Program Files\Google\google_appengine\lib\django\django\template_init_.py", line 705, in render bits.append(self.render_node(node, context)) File "C:\Program Files\Google\google_appengine\lib\django\django\template_init_.py", line 718, in render_node return(node.render(context)) File "C:\Program Files\Google\google_appengine\lib\django\django\template\defaulttags.py", line 209, in render return self.nodelist_true.render(context) File "C:\Program Files\Google\google_appengine\lib\django\django\template_init_.py", line 705, in render bits.append(self.render_node(node, context)) File "C:\Program Files\Google\google_appengine\lib\django\django\template_init_.py", line 718, in render_node return(node.render(context)) File "C:\Program Files\Google\google_appengine\lib\django\django\template_init_.py", line 768, in render return self.encode_output(output) File "C:\Program Files\Google\google_appengine\lib\django\django\template_init_.py", line 757, in encode_output return str(output) File "C:\Program Files\Google\google_appengine\lib\django\django\newforms\util.py", line 26, in str return self.unicode().encode(settings.DEFAULT_CHARSET) File "C:\Program Files\Google\google_appengine\lib\django\django\newforms\forms.py", line 73, in unicode return self.as_table() File "C:\Program Files\Google\google_appengine\lib\django\django\newforms\forms.py", line 144, in as_table return self._html_output(u'%(label)s%(errors)s%(field)s%(help_text)s', u'%s', '', u'%s', False) File "C:\Program Files\Google\google_appengine\lib\django\django\newforms\forms.py", line 129, in _html_output output.append(normal_row % {'errors': bf_errors, 'label': label, 'field': unicode(bf), 'help_text': help_text}) File "C:\Program Files\Google\google_appengine\lib\django\django\newforms\forms.py", line 232, in unicode value = value.str() File "C:\Program Files\Google\google_appengine\lib\django\django\newforms\util.py", line 26, in str return self.unicode().encode(settings.DEFAULT_CHARSET) File "C:\Program Files\Google\google_appengine\lib\django\django\newforms\widgets.py", line 246, in unicode return u'\n%s\n' % u'\n'.join([u'%s' % w for w in self]) File "C:\Program Files\Google\google_appengine\lib\django\django\newforms\widgets.py", line 238, in iter yield RadioInput(self.name, self.value, self.attrs.copy(), choice, i) File "C:\Program Files\Google\google_appengine\lib\django\django\newforms\widgets.py", line 212, in init self.choice_value = smart_unicode(choice[0]) TypeError: 'int' object is unsubscriptable Do You have any idea how I can do this validation in different case? I have tried to do it using this kind of: class ItemUserAnswer(djangoforms.ModelForm): class Meta: model = UserAnswer But I dont know how to add extra labels to this form and it is displayed in one line. Do You have any suggestions? Thanks a lot as it making me crazy why it is still not working:/

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  • Using PyLab to create a 2D graph from two separate lists

    - by user324333
    Hey Guys, This seems like a basic problem with an easy answer but I simply cannot figure it out no matter how much I try. I am trying to create a line graph based on two lists. For my x-axis, I want my list to be a set of strings. x_axis_list = ["Jan-06","Jul-06","Jan-07","Jul-07","Jan-08"] y_axis_list = [5,7,6,8,9] Any suggestions on how to best graph these items?

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  • How to write program to do file transfer based on based omniORBpy

    - by cofthew7
    I'm now writing a Corba project to do file transfering between client and server. But I face trouble when I want to upload file from the client to the server. The IDL I defined is: interface SecretMessage { string send_file(in string file_name, in string file_obj); }; And I implemented the uploading function in the client code: f = open('SB.docx', 'rb') data = '' for piece in read_in_chunks(f): data += piece result = mo.send_file('2.docx', data) If the file is a plain txt file, there is no problem. But if the file is a, like jpg, doc, or others except txt, then it does work. It gives me the error: omniORB.CORBA.BAD_PARAM: CORBA.BAD_PARAM(omniORB.BAD_PARAM_WrongPythonType, CORBA.COMPLETED_NO) Where is the problem?

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  • Custom pyGTK button

    - by Wallter
    I would like to create a button that I can control the look of the button using pyGTK. How would I go about doing this? I would like to be able to point to a new image for each 'state' the button is in (i.e. Pressed, mouse over, normal...etc.)

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  • Can someone help me with m Django localization?

    - by alex
    I have a template with has text in it. It's located in /templates under my project directory. I'm trying to do Japanese now. I create a directory called "locale" in my project directory. Then, I set up this in my settings: gettext = lambda s: s LANGUAGES = ( ('de', gettext('German')), ('en', gettext('English')), ('ja', gettext('Japanese')), ) After that, I run this command: django-admin.py makemessages -l ja The only problem is, this doesn't work! In my locale/ja/LC_MESSAGES/django.po: Isn't it supposed to scan my templates with .html extension and grab all the strings? # SOME DESCRIPTIVE TITLE. # Copyright (C) YEAR THE PACKAGE'S COPYRIGHT HOLDER # This file is distributed under the same license as the PACKAGE package. # FIRST AUTHOR <EMAIL@ADDRESS>, YEAR. # #, fuzzy msgid "" msgstr "" "Project-Id-Version: PACKAGE VERSION\n" "Report-Msgid-Bugs-To: \n" "POT-Creation-Date: 2010-05-20 22:45+0000\n" "PO-Revision-Date: YEAR-MO-DA HO:MI+ZONE\n" "Last-Translator: FULL NAME <EMAIL@ADDRESS>\n" "Language-Team: LANGUAGE <[email protected]>\n" "MIME-Version: 1.0\n" "Content-Type: text/plain; charset=UTF-8\n" "Content-Transfer-Encoding: 8bit\n" #: settings.py:101 msgid "German" msgstr "" #: settings.py:102 msgid "English" msgstr "" #: settings.py:103 msgid "Japanese" msgstr ""

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  • NumPy: how to quickly normalize many vectors?

    - by EOL
    How can a list of vectors be elegantly normalized, in NumPy? Here is an example that does not work: from numpy import * vectors = array([arange(10), arange(10)]) # All x's, then all y's norms = apply_along_axis(linalg.norm, 0, vectors) # Now, what I was expecting would work: print vectors.T / norms # vectors.T has 10 elements, as does norms, but this does not work The last operation yields "shape mismatch: objects cannot be broadcast to a single shape". How can the normalization of the 2D vectors in vectors be elegantly done, with NumPy? Edit: Why does the above not work while adding a dimension to norms does work (as per my answer below)?

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  • wx paste image into panel

    - by Moayyad Yaghi
    hello i need to find a way to copy an image from a software .. ( microsoft paint for example ) and paste it into my own pain tool that i made using wxpython .. how do i read the image that has been loaded into memory ? so i can paste it hope idea is clear enough thanks in advance

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  • How to update the contents of a FigureCanvasTkAgg

    - by Copo
    I'm plotting some data in a Tkinter FigureCanvasTkagg using matplotlib. I need to clear the figure where i plot data and draw new data when a button is pressed. here is the plotting part of the code (there's an App class defined before..) self.fig = figure() self.ax = self.fig.add_subplot(111) self.ax.set_ylim( min(y), max(y) ) self.line, = self.ax.semilogx(x,y,'.-') #tuple of a single element self.canvas = FigureCanvasTkAgg(self.fig,master=master) self.ax.semilogx(x,y,'o-') self.canvas.show() self.canvas.get_tk_widget().pack(side='top', fill='both', expand=1) self.frame.pack() how do i update the contents of such a canvas? regards, Jacopo

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  • How can this verbose, unpythonic routine be improved?

    - by fmark
    Is there a more pythonic way of doing this? I am trying to find the eight neighbours of an integer coordinate lying within an extent. I am interested in reducing its verbosity without sacrificing execution speed. def fringe8((px, py), (x1, y1, x2, xy)): f = [(px - 1, py - 1), (px - 1, py), (px - 1, py + 1), (px, py - 1), (px, py + 1), (px + 1, py - 1), (px + 1, py), (px + 1, py + 1)] f_inrange = [] for fx, fy in f: if fx < x1: continue if fx >= x2: continue if fy < y1: continue if fy >= y2: continue f_inrange.append((fx, fy)) return f_inrange

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  • who can help me install osqa on bluehost?

    - by rutger
    hi all, i've tried to install osqa on bluehost but i simply have to admit that my skills and knowledge are not sufficient. I'm not getting anywhere. Is there anyone that would consider helping me install osqa on my bluehost account. I'm willing to offer a fair compensation for it. kind regards, Rutger

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  • How do I pass a lot of parameters to views in Dango?

    - by Mark
    I'm very new to Django and I'm trying to build an application to present my data in tables and charts. Till now my learning process went very smooth, but now I'm a bit stuck. My pageview retrieves large amounts of data from a database and puts it in the context. The template then generates different html-tables. So far so good. Now I want to add different charts to the template. I manage to do this by defining <img src=".../> tags. The Matplotlib chart is generate in my chartview an returned via: response=HttpResponse(content_type='image/png') canvas.print_png(response) return response Now I have different questions: the data is retrieved twice from the database. Once in the pageview to render the tables, and again in the chartview for making the charts. What is the best way to pass the data, already in the context of the page to the chartview? I need a lot of charts, each with different datasets. I could make a chartview for each chart, but probably there is a better way. How do I pass the different dataset names to the chartview? Some charts have 20 datasets, so I don't think that passing these dataset parameters via the url (like: <imgm src="chart/dataset1/dataset2/.../dataset20/chart.png />) is the right way. Any advice?

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  • Refining data stored in SQLite - how to join several contacts?

    - by Krab
    Problem background Imagine this problem. You have a water molecule which is in contact with other molecules (if the contact is a hydrogen bond, there can be 4 other molecules around my water). Like in the following picture (A, B, C, D are some other atoms and dots mean the contact). A B . . O / \ H H . . C D I have the information about all the dots and I need to eliminate the water in the center and create records describing contacts of A-C, A-D, A-B, B-C, B-D, and C-D. Database structure Currently, I have the following structure in the database: Table atoms: "id" integer PRIMARY KEY, "amino" char(3) NOT NULL, (HOH for water or other value) other columns identifying the atom Table contacts: "acceptor_id" integer NOT NULL, (the atom near to my hydrogen, here C or D) "donor_id" integer NOT NULL, (here A or B) "directness" char(1) NOT NULL, (this should be D for direct and W for water-mediated) other columns about the contact, such as the distance Current solution (insufficient) Now, I'm going through all the contacts which have donor.amino = "HOH". In this sample case, this would select contacts from C and D. For each of these selected contacts, I look up contacts having the same acceptor_id as is the donor_id in the currently selected contact. From this information, I create the new contact. At the end, I delete all contacts to or from HOH. This way, I am obviously unable to create C-D and A-B contacts (the other 4 are OK). If I try a similar approach - trying to find two contacts having the same donor_id, I end up with duplicate contacts (C-D and D-C). Is there a simple way to retrieve all six contacts without duplicates? I'm dreaming about some one page long SQL query which retrievs just these six wanted rows. :-) It is preferable to conserve information about who is donor where possible, but not strictly necessary. Big thanks to all of you who read this question to this point.

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  • What is going on with the "return fibonacci( number-1 ) + fibonacci( number-2 )"?

    - by user1478598
    I have problem understanding what the return fibonacci( number-1 ) + fibonacci( number-2 ) does in the following program: import sys def fibonacci( number ): if( number <= 2 ): return 1 else: return fibonacci( number-1 ) + fibonacci( number-2 ) The problem is that I can't imagine how this line works: return fibonacci( number-1 ) + fibonacci( number-2 ) Does the both of the "fibonacci( number-1 )" and "fibonacci( number-2 )" being processed at the same time? or the "fibonacci( number-1 )" is the first to be processed and then the second one? I only see that processing both of them would eventually return '1' so the last result I expect to see it is a '1 + 1' = '2' I would appreciate a lot, If someone can elaborately explain the process of its calculation. I think this is a very newb question but I can't really get a picture of its process.

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  • How to share memory buffer across sessions in Django?

    - by afriza
    I want to have one party (or more) sends a stream of data via HTTP request(s). Other parties will be able to receive the same stream of data in almost real-time. The data stream should be accessible across sessions (according to access control list). How can I do this in Django? If possible I would like to avoid database access and use in memory buffer (along with some synchronization mechanism)

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  • Silence output from SimpleXMLRPCServer

    - by Corey Goldberg
    I am running an xml-rpc server using SimpleXMLRPCServer from the stdlib. My code looks something like this: import SimpleXMLRPCServer import socket class RemoteStarter: def start(self): return 'foo' rs = RemoteStarter() host = socket.gethostbyaddr(socket.gethostname())[0] port = 9000 server = SimpleXMLRPCServer.SimpleXMLRPCServer((host, port)) server.register_instance(rs) server.serve_forever() every time the 'start' method gets called remotely, the server prints an access line like this: <server_name> - - [10/Mar/2010 13:06:20] "POST /RPC2 HTTP/1.0" 200 - I can't figure out a way to silence the output so it doesn't print these access lines to stdout. anyone?

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  • A web framework where AJAX was not an after thought

    - by Pirate for Profit
    AJAX is a pain in the ass because it essentially means you'll have to write two sets of similarish code: one for browsers with JavaScript enabled and those without. Not only this, but you have to connect JavaScript events to hook into your models and display the results. And if all that weren't bad enough, you need to send an address change with the request, otherwise the user won't be able to "click back" correctly (if confused look at what happens to the address bar when you click links in GMail). We're searching for something that had the foresight and design goals with all these concerns in mind. Performance and security are also obvious major concerns. We love config-based systems as well, where you don't have to write a lot of code you just drop it into an easily read config format. It's like asking for the holy grail right?

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  • Extracting attribute data from a raster

    - by user308827
    Hi, I have a raster file (basically 2D array) with close to a million points. I am trying to extract a circle from the raster (and all the points that lie within the circle. Using ArcGIS is exceedingly slow for this. Can anyone suggest any image processing library that is both easy to learn and powerful and quick enough for something like this? Thanks!

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  • load a pickle file from a zipfile

    - by eric.frederich
    For some reason I cannot get cPickle.load to work on the file-type object returned by ZipFile.open(). If I call read() on the file-type object returned by ZipFile.open() I can use cPickle.loads though. Example .... import zipfile import cPickle # the data we want to store some_data = {1: 'one', 2: 'two', 3: 'three'} # # create a zipped pickle file # zf = zipfile.ZipFile('zipped_pickle.zip', 'w', zipfile.ZIP_DEFLATED) zf.writestr('data.pkl', cPickle.dumps(some_data)) zf.close() # # cPickle.loads works # zf = zipfile.ZipFile('zipped_pickle.zip', 'r') sd1 = cPickle.loads(zf.open('data.pkl').read()) zf.close() # # cPickle.load doesn't work # zf = zipfile.ZipFile('zipped_pickle.zip', 'r') sd2 = cPickle.load(zf.open('data.pkl')) zf.close() Note: I don't want to zip just the pickle file but many files of other types. This is just an example.

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  • In Django : How to serialize dict object to json ?

    - by Rohit
    I have this very basic problem, >>> serializers.serialize("json", {'a':1}) Traceback (most recent call last): File "<console>", line 1, in <module> File "/usr/lib/pymodules/python2.6/django/core/serializers/__init__.py", line 87, in serialize s.serialize(queryset, **options) File "/usr/lib/pymodules/python2.6/django/core/serializers/base.py", line 40, in serialize for field in obj._meta.local_fields: AttributeError: 'str' object has no attribute '_meta' >>> How can this be done ? Thanks in advance !

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