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  • Is there a better way of making numpy.argmin() ignore NaN values

    - by Dragan Chupacabrovic
    Hello Everybody, I want to get the index of the min value of a numpy array that contains NaNs and I want them ignored >>> a = array([ nan, 2.5, 3., nan, 4., 5.]) >>> a array([ NaN, 2.5, 3. , NaN, 4. , 5. ]) if I run argmin, it returns the index of the first NaN >>> a.argmin() 0 I substitute NaNs with Infs and then run argmin >>> a[isnan(a)] = Inf >>> a array([ Inf, 2.5, 3. , Inf, 4. , 5. ]) >>> a.argmin() 1 My dilemma is the following: I'd rather not change NaNs to Infs and then back after I'm done with argmin (since NaNs have a meaning later on in the code). Is there a better way to do this? There is also a question of what should the result be if all of the original values of a are NaN? In my implementation the answer is 0

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  • How to obtain the root of a tree without parsing the entire file?

    - by Matt.
    I'm making an xml parser to parse xml reports from different tools, and each tool generates different reports with different tags. For example: Arachni generates an xml report with <arachni_report></arachni_report> as tree root tag. nmap generates an xml report with <nmaprun></nmaprun> as tree root tag. I'm trying not to parse the entire file unless it's a valid report from any of the tools I want. First thing I thought to use was ElementTree, parse the entire xml file (supposing it contains valid xml), and then check based on the tree root if the report belongs to Arachni or nmap. I'm currently using cElementTree, and as far as I know getroot() is not an option here, but my goal is to make this parser to operate with recognized files only, without parsing unnecessary files. By the way, I'm Still learning about xml parsing, thanks in advance.

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  • The dictionary need to add every word in SpellingMistakes and the line number but it only adds the l

    - by Will Boomsight
    modules import sys import string Importing and reading the files form the Command Prompt Document = open(sys.argv[1],"r") Document = open('Wc.txt', 'r') Document = Document.read().lower() Dictionary = open(sys.argv[2],"r") Dictionary = open('Dict.txt', 'r') Dictionary = Dictionary.read() def Format(Infile): for ch in string.punctuation: Infile = Infile.replace(ch, "") for no in string.digits: Infile = Infile.replace(no, " ") Infile = Infile.lower() return(Infile) def Corrections(Infile, DictWords): Misspelled = set([]) Infile = Infile.split() DictWords = DictWords.splitlines() for word in Infile: if word not in DictWords: Misspelled.add(word) Misspelled = sorted(Misspelled) return (Misspelled) def Linecheck(Infile,ErrorWords): Infile = Infile.split() lineno = 0 Noset = list() for line in Infile: lineno += 1 line = line.split() for word in line: if word == ErrorWords: Noset.append(lineno) sorted(Noset) return(Noset) def addkey(error,linenum): Nodict = {} for line in linenum: Nodict.setdefault(error,[]).append(linenum) return Nodict FormatDoc = Format(Document) SpellingMistakes = Corrections(FormatDoc,Dictionary) alp = str(SpellingMistakes) for word in SpellingMistakes: nSet = str(Linecheck(FormatDoc,word)) nSet = nSet.split() linelist = addkey(word, nSet) print(linelist) # # for word in Nodict.keys(): # Nodict[word].append(line) Prints each incorrect word on a new line

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  • How to get progress bar to time Class exectution

    - by chrissygormley
    Hello, I am trying to use progress bar to show the progress of a script. I want it increase progress after every function in a class is executed. The code I have tried is below: import progressbar from time import sleep class hello(): def no(self): print 'hello!' def yes(self): print 'No!!!!!!' def pro(): bar = progressbar.ProgressBar(widgets=[progressbar.Bar('=', '[', ']'), ' ', progressbar.Percentage()]) for i in Yep(): bar.update(Yep.i()) sleep(0.1) bar.finish() if __name__ == "__main__": Yep = hello() pro() Does anyone know how to get this working. Thanks

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  • Django db encoding

    - by realshadow
    Hey, I have a little problem with encoding. The data in db is ok, when I select the data in php its ok. Problem comes when I get the data and try to print it in the template, I get - Å port instead of Šport, etc. Everything is set to utf-8 - in settings.py, meta tags in template, db table and I even have unicode method specified for the model, but nothing seems to work. I am getting pretty hopeless here... Here is some code: class Category_info(models.Model): objtree_label_id = models.AutoField(primary_key = True) node_id = models.IntegerField(unique = True) language_id = models.IntegerField() label = models.CharField(max_length = 255) type_id = models.IntegerField() class Meta: db_table = 'objtree_labels' def __unicode__(self): return self.label I have even tried with return u"%s" % self.label. Here is the view: def categories_list(request): categories_list = Category.objects.filter(parent_id = 1, status = 1) paginator = Paginator(categories_list, 10) try: page = int(request.GET.get('page', 1)) except ValueError: page = 1 try: categories = paginator.page(page) except (EmptyPage, InvalidPage): categories = paginator.page(paginator.num_pages) return render_to_response('categories_list.html', {'categories': categories}) Maybe I am just blind and/or stupid, but it just doesnt work. So any help is appreciated, thanks in advance. Regards

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  • Selective emboldeing of text in a webpage

    - by Eknath Iyer
    while printing out utf-8 characters onto a webpage, if encapsulate them with they get emboldened, but anything else, the page turns blank. Why? def main(): print "Content-type: text/html\r\n\r\n"; print '<html>' print '<head>' print '<style type="text/css">' print '.highlight { background-color: yellow }' print '.color1 { color: green; }' print '.color2 { color: blue; }' print '.color3 { color: purple; }' print '.color4 { color: red; }' print '.color5 { color: teal; }' print '.color6 { color: yellow; }' print '.color7 { color: orange; }' print '.color8 { color: violet; }' print '</style></head>' print '<body>' form = cgi.FieldStorage() ch = form.getvalue('choice') if ch == 'English': in_sent = form.getvalue('f1') in_sent = in_sent.lower() cho=0 elif ch == 'Hindi': in_sent = trans_he(form.getvalue('transl1').decode("utf-8")).strip() cho=1 #cho = 0 for english #cho = 1 for hindi adict=[] print '<center><u> User Input Sentence ==> <b>', in_sent,'</b></u></center><br>' in_sent=in_sent.strip().split(' ') colordict={} counter=1 for word in in_sent: colordict[word]=counter counter = counter + 1 f = open('bidirectional.alignment.txt','rb').read() records=f.strip().split('\n\n\n') for record in records: el=[] el2 = [] #basic file processing is done here. record = record.strip().split('\n') source = record[cho] target = record[(cho+1)%2] source_sent = source.split(' # ')[1] target_sent = target.split(' # ')[1] source_words = source_sent.strip().split(' ') target_words = target_sent.strip().split(' ') trans_index = source.split(' # ')[2].strip().split(' ') for word in in_sent: if word in source_words: if int(trans_index[source_words.index(word)]) > 0: tword=target_words[(int(trans_index[source_words.index(word)])-1)] target_sent = target_sent.replace(tword+' ','<b>'+tword+' </b>') # When the <b> tag is used here(for the 'target_sent = ...' statement). it is fine. But when <b> is replaced by something like in the next line or even <i> or <u>, it doesn't show an output at all source_sent = source_sent.replace(word+' ','<span class="color1">'+word+' </span>') el2.append(source_sent) el2.append(target_sent) el.append(target_sent.count('<b>')) el.append(el2) if target_sent.count('<b>') > 0: adict.append(el) print '<table><tr><td><center><h1>SOURCE LANGUAGE</h1></center></td><td><center> <h1>TARGET LANGUAGE</h1></center></td></tr>' for entry in adict: print '<tr><td>',entry[1][0],'</td><td>',trans_eh(entry[1][1]).encode("utf-8"),'</td> </tr>' print '</table></body>' print '</html>' main()

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  • App Engine HTTP 500s

    - by pocoa
    This request caused a new process to be started for your application, and thus caused your application code to be loaded for the first time. This request may thus take longer and use more CPU than a typical request for your application. I've handled all the situations, also DeadlineExceededError too. But sometimes I see these error messages in error logs. That request took about 10k ms, so it's not exceeded the limit too. But there is no other specific message about this error. All I know is that it returned HTTP 500. Is there anyone know the reason of these error messages? Thank you.

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  • How to update the filename of a Django's FileField instance ?

    - by pierre-guillaume-degans
    Hello, Here a simple django model: class SomeModel(models.Model): title = models.CharField(max_length=100) video = models.FileField(upload_to='video') I would like to save any instance so that the video's file name would be a valid file name of the title. For example, in the admin interface, I load a new instance with title "Lorem ipsum" and a video called "video.avi". The copy of the file on the server should be "Lorem Ipsum.avi" (or "Lorem_Ipsum.avi"). Thank you :)

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  • inheritance from str or int

    - by wiso
    Why I have problem creating a class the inherite from str (or also int) class C(str): def __init__(self, a, b): str.__init__(self,a) self.b = b C("a", "B") TypeError: str() takes at most 1 argument (2 given) tha same appened if I try to use int instead of str, but it works with custom classes. I need to use __new__ instead of __init__? why?

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  • Graphics glitch when drawing to a Cairo context obtained from a gtk.DrawingArea inside a gtk.Viewport.

    - by user410023
    I am trying to redraw the part of the DrawingArea that is visible in the Viewport in the expose-event handler. However, it seems that I am doing something wrong with the coordinates that are passed to the event handler because there is garbage at the edge of the Viewport when scrolling. Can anyone tell what I am doing wrong? Here is a small example: import pygtk pygtk.require("2.0") import gtk from numpy import array from math import pi class Circle(object): def init(self, position = [0., 0.], radius = 0., edge = (0., 0., 0.), fill = None): self.position = position self.radius = radius self.edge = edge self.fill = fill def draw(self, ctx): rect = array(ctx.clip_extents()) rect[2] -= rect[0] rect[3] -= rect[1] center = rect[2:4] / 2 ctx.arc(center[0], center[1], self.radius, 0., 2. * pi) if self.fill != None: ctx.set_source_rgb(*self.fill) ctx.fill_preserve() ctx.set_source_rgb(*self.edge) ctx.stroke() class Scene(object): class Proxy(object): directory = {} def init(self, target, layers = set()): self.target = target self.layers = layers Scene.Proxy.directory[target] = self def __init__(self, viewport): self.objects = {} self.layers = [set()] self.viewport = viewport self.signals = {} def draw(self, ctx): x = self.viewport.get_hadjustment().value y = self.viewport.get_vadjustment().value ctx.set_source_rgb(1., 1., 1.) ctx.paint() ctx.translate(x, y) for obj in self: obj.draw(ctx) def add(self, item, layer = 0): item = Scene.Proxy(item, layers = set((layer,))) assert(hasattr(item.target, "draw")) assert(isinstance(layer, int)) item.layers.add(layer) while not layer < len(self.layers): self.layers.append(set()) self.layers[layer].add(item) if not item in self.objects: self.objects[item] = set() self.objects[item].add(layer) def remove(self, item, layers = None): item = Scene.Proxy.directory[item] if layers == None: layers = self.objects[item] for layer in layers: layer.remove(item) item.layers.remove(layer) if len(item.layers) == 0: self.objects.remove(item) def __iter__(self): for layer in self.layers: for item in layer: yield item.target class App(object): def init(self): signals = { "canvas_exposed": self.update_canvas, "gtk_main_quit": gtk.main_quit } self.builder = gtk.Builder() self.builder.add_from_file("graphics_glitch.glade") self.window = self.builder.get_object("window") self.viewport = self.builder.get_object("viewport") self.canvas = self.builder.get_object("canvas") self.scene = Scene(self.viewport) signals.update(self.scene.signals) self.builder.connect_signals(signals) self.window.show() def update_canvas(self, widget, event): ctx = self.canvas.window.cairo_create() self.scene.draw(ctx) ctx.clip() if name == "main": app = App() scene = app.scene scene.add(Circle((0., 0.), 10.)) gtk.main() And the Glade file "graphics_glitch.glade": <?xml version="1.0"?> <interface> <requires lib="gtk+" version="2.16"/> <!-- interface-naming-policy project-wide --> <object class="GtkWindow" id="window"> <property name="width_request">200</property> <property name="height_request">200</property> <property name="visible">True</property> <signal name="destroy" handler="gtk_main_quit"/> <child> <object class="GtkScrolledWindow" id="scrolledwindow1"> <property name="visible">True</property> <property name="can_focus">True</property> <property name="hadjustment">h_adjust</property> <property name="vadjustment">v_adjust</property> <property name="hscrollbar_policy">automatic</property> <property name="vscrollbar_policy">automatic</property> <child> <object class="GtkViewport" id="viewport"> <property name="visible">True</property> <property name="resize_mode">queue</property> <child> <object class="GtkDrawingArea" id="canvas"> <property name="width_request">640</property> <property name="height_request">480</property> <property name="visible">True</property> <signal name="expose_event" handler="canvas_exposed"/> </object> </child> </object> </child> </object> </child> </object> <object class="GtkAdjustment" id="h_adjust"> <property name="lower">-1000</property> <property name="upper">1000</property> <property name="step_increment">1</property> <property name="page_increment">25</property> <property name="page_size">25</property> </object> <object class="GtkAdjustment" id="v_adjust"> <property name="lower">-1000</property> <property name="upper">1000</property> <property name="step_increment">1</property> <property name="page_increment">25</property> <property name="page_size">25</property> </object> </interface> Thanks! --Dan

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  • Euclidian Distances between points

    - by R S
    I have an array of points in numpy: points = rand(dim, n_points) And I want to: Calculate all the l2 norm (euclidian distance) between a certain point and all other points Calculate all pairwise distances. and preferably all numpy and no for's.

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  • Inexpensive ways to add seek to a filetype object

    - by becomingGuru
    PdfFileReader reads the content from a pdf file to create an object. I am querying the pdf from a cdn via urllib.urlopen(), this provides me a file like object, which has no seek. PdfFileReader, however uses seek. What is the simple way to create a PdfFileReader object from a pdf downloaded via url. Now, what can I do to avoid writing to disk and reading it again via file(). Thanks in advance.

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  • creating message box as sheets for mac in PyQt

    - by user971306
    I used message box as seperate dialog instead of sheets for mac OS, now i m working on it to spawn a sheet as message box instead of seperate one. I have tried setting the message box as a modal one: (messagebox.setWindowModality(QtCore.Qt.WindoModal)) and setting message box, parent dialog window flags as sheet (parentDialog.setWindowFlags(QtCore.Qt.Sheet) messagebox.setWindowFlags(QtCore.Qt.Sheet)) But the above commands are not working to create a sheet instead of seperate dialog. Does anyone have an idea of how to solve?

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  • How do you efficiently bulk index lookups?

    - by Liron Shapira
    I have these entity kinds: Molecule Atom MoleculeAtom Given a list(molecule_ids) whose lengths is in the hundreds, I need to get a dict of the form {molecule_id: list(atom_ids)}. Likewise, given a list(atom_ids) whose length is in the hunreds, I need to get a dict of the form {atom_id: list(molecule_ids)}. Both of these bulk lookups need to happen really fast. Right now I'm doing something like: atom_ids_by_molecule_id = {} for molecule_id in molecule_ids: moleculeatoms = MoleculeAtom.all().filter('molecule =', db.Key.from_path('molecule', molecule_id)).fetch(1000) atom_ids_by_molecule_id[molecule_id] = [ MoleculeAtom.atom.get_value_for_datastore(ma).id() for ma in moleculeatoms ] Like I said, len(molecule_ids) is in the hundreds. I need to do this kind of bulk index lookup on almost every single request, and I need it to be FAST, and right now it's too slow. Ideas: Will using a Molecule.atoms ListProperty do what I need? Consider that I am storing additional data on the MoleculeAtom node, and remember it's equally important for me to do the lookup in the molecule-atom and atom-molecule directions. Caching? I tried memcaching lists of atom IDs keyed by molecule ID, but I have tons of atoms and molecules, and the cache can't fit it. How about denormalizing the data by creating a new entity kind whose key name is a molecule ID and whose value is a list of atom IDs? The idea is, calling db.get on 500 keys is probably faster than looping through 500 fetches with filters, right?

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  • How to get the original variable name of variable passed to a function

    - by Acorn
    Is it possible to get the original variable name of a variable passed to a function? E.g. foobar = "foo" def func(var): print var.origname So that: func(foobar) Returns: >>foobar EDIT: All I was trying to do was make a function like: def log(soup): f = open(varname+'.html', 'w') print >>f, soup.prettify() f.close() .. and have the function generate the filename from the name of the variable passed to it. I suppose if it's not possible I'll just have to pass the variable and the variable's name as a string each time.

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  • Regex for Matching First Alphanumeric Character skipping (The |An? )

    - by TheLizardKing
    I have a list of artists, albums and tracks that I want to sort using the first letter of their respective name. The issue arrives when I want to ignore "The ", "A ", "An " and other various non-alphanumeric characters (Talking to you "Weird Al" Yankovic and [dialog]). Django has a nice start '^(An?|The) +' but I want to ignore those and a few others of my choice. I am doing this in Django, using a MySQL db with utf8_bin collation.

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  • Which webserver to use with bottle?

    - by luc
    Bottle can use several webservers: Build-in HTTP development server and support for paste, fapws3, flup, cherrypy or any other WSGI capable server. I am using bottle for a desktop-app and I guess that the development server is enough in this case. I would like to know if some of you have experience with one of the alternative server. Which server for which purpose? Thanks in advance

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  • Tokenize a command string

    - by pocoa
    I have string like this: command "http://www.mysite.com" some_param="string param" some_param2=50 I want to tokenize this string into: command "http://www.mysite.com" some_param="string param" some_param2=50 I know it's possible to split with spaces but these parameters can also be seperated by commas, like: command "http://www.mysite.com", some_param="string param", some_param2=50 I tried to do it like this: \w+\=?\"?.+\"? but it didn't work.

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  • Reducing size of a character array in Numpy

    - by Morgoth
    Given a character array: In [21]: x = np.array(['a ','bb ','cccc ']) One can remove the whitespace using: In [22]: np.char.strip(x) Out[22]: array(['a', 'bb', 'cccc'], dtype='|S8') but is there a way to also shrink the width of the column to the minimum required size, in the above case |S4?

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  • Chipmunk warning still present with --release

    - by Kaliber64
    I'm using Python27 on Windows 7 64-bit. I downloaded the source for Chipmunk 6.2.x and compiled Pymunk with --release and -c ming32. Almost zero problems. Lots of path not found cause I'm bad. All prints seem to have disappeared but I get spammed with EPA iteration warnings. I've seen a couple discussions but no solutions. Possible chipmunk betas to fix the float errors causing the double truths causing the warning. I picked the latest stable version I think. My program is seriously bogged down with all the prints. class NullDevice(): def write(self, s): pass sys.stdout=NullDevice() Does not disable the C prints .< Any help?

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