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  • why is this dictionary line number count not working?

    - by jad
    i have this piece of code the last bit of the code starting from d = {} im trying to print the words with its line number located in the text but it is not working its only printing the words anyone know why ??? need help ASAP import sys import string text = [] infile = open(sys.argv[1], 'r').read() for punct in string.punctuation: infile = infile.replace(punct, "") text = infile.split() dict = open(sys.argv[2], 'r').read() dictset = [] dictset = dict.split() words = [] words = list(set(text) - set(dictset)) words = [text.lower() for text in words] words.sort() d = {} counter = 0 for lines in text: counter += 1 if word not in d: d[words] = [counter] else: d[words.append[counter] print(word, d)

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  • Can anyone tell me why these lines are not working?

    - by user343934
    I am trying to generate tree with fasta file input and Alignment with MuscleCommandline import sys,os, subprocess from Bio import AlignIO from Bio.Align.Applications import MuscleCommandline cline = MuscleCommandline(input="c:\Python26\opuntia.fasta") child= subprocess.Popen(str(cline), stdout = subprocess.PIPE, stderr=subprocess.PIPE, shell=(sys.platform!="win32")) align=AlignIO.read(child.stdout,"fasta") outfile=open('c:\Python26\opuntia.phy','w') AlignIO.write([align],outfile,'phylip') outfile.close() I always encounter with these problems Traceback (most recent call last): File "", line 244, in run_nodebug File "C:\Python26\muscleIO.py", line 11, in align=AlignIO.read(child.stdout,"fasta") File "C:\Python26\Lib\site-packages\Bio\AlignIO_init_.py", line 423, in read raise ValueError("No records found in handle") ValueError: No records found in handle

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  • Django adminsite customize search_fields query

    - by dArignac
    Howdy! In the django admin you can set the search_fields for the ModelAdmin to be able to search over the properties given there. My model class has a property that is not a real model property, means it is not within the database table. The property relates to another database table that is not tied to the current model through relations. But I want to be able to search over it, so I have to somehow customize the query the admin site creates to do the filtering when the search field was filled - is this possible and if, how? I can query the database table of my custom property and it then returns the ids of the model classes fitting the search. This then, as I said, has to flow into the admin site search query. Thanks!

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  • PyQt QAbstractListModel seems to ignore tristate flags

    - by mcieslak
    I've been trying for a couple days to figure out why my QAbstractLisModel won't allow a user to toggle a checkable item in three states. The model returns the Qt.IsTristate and Qt.ItemIsUserCheckable in the flags() method, but when the program runs only Qt.Checked and Qt.Unchecked are toggled on edit. class cboxModel(QtCore.QAbstractListModel): def __init__(self, parent=None): super(cboxModel, self).__init__(parent) self.cboxes = [ ['a',0], ['b',1], ['c',2], ['d',0] ] def rowCount(self,index=QtCore.QModelIndex()): return len(self.cboxes) def data(self,index,role): if not index.isValid: return QtCore.QVariant() myname,mystate = self.cboxes[index.row()] if role == QtCore.Qt.DisplayRole: return QtCore.QVariant(myname) if role == QtCore.Qt.CheckStateRole: if mystate == 0: return QtCore.QVariant(QtCore.Qt.Unchecked) elif mystate == 1: return QtCore.QVariant(QtCore.Qt.PartiallyChecked) elif mystate == 2: return QtCore.QVariant(QtCore.Qt.Checked) return QtCore.QVariant() def setData(self,index,value,role=QtCore.Qt.EditRole): if index.isValid(): self.cboxes[index.row()][1] = value.toInt()[0] self.emit(QtCore.SIGNAL("dataChanged(QModelIndex,QModelIndex)"), index, index) print self.cboxes return True return False def flags(self,index): if not index.isValid(): return QtCore.Qt.ItemIsEditable return QtCore.Qt.ItemIsEnabled | QtCore.Qt.ItemIsEditable | QtCore.Qt.ItemIsUserCheckable | QtCore.Qt.ItemIsTristate You can test it with this, class MainForm(QtGui.QMainWindow): def __init__(self, parent=None): super(MainForm, self).__init__(parent) model = cboxModel(self) self.view = QtGui.QListView() self.view.setModel(model) self.setCentralWidget(self.view) app = QtGui.QApplication(sys.argv) form = MainForm() form.show() app.exec_() and see that only 2 states are available. I'm assuming there's something simple I'm missing. Any ideas? Thanks!

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  • SQLAlchemy sessions - DetachedInstanceError?

    - by benjaminhkaiser
    I have a function that attempts to take a list of usernames, look each one up in a user table, and then add them to a membership table. If even one username is invalid, I want the entire list to be rolled back, including any users that have already been processed. I thought that using sessions was the best way to do this but I'm running into a DetachedInstanceError: DetachedInstanceError: Instance <Organization at 0x7fc35cb5df90> is not bound to a Session; attribute refresh operation cannot proceed Full stack trace is here. The error seems to trigger when I attempt to access the user (model) object that is returned by the query. From my reading I understand that it has something to do with there being multiple sessions, but none of the suggestions I saw on other threads worked for me. Code is below: def add_members_in_bulk(organization_eid, users): """Add users to an organization in bulk - helper function for add_member()""" """Returns "success" on success and id of first failed student on failure""" session = query_session.get_session() session.begin_nested() users = users.split('\n') for u in users: try: user = user_lookup.by_student_id(u) except ObjectNotFoundError: session.rollback() return u if user: membership.add_user_to_organization( user.entity_id, organization_eid, '', [] ) session.flush() session.commit() return 'success' here's the membership.add_user_to_organization: def add_user_to_organization(user_eid, organization_eid, title, tag_ids): """Add a User to an Organization with the given title""" user = user_lookup.by_eid(user_eid) organization = organization_lookup.by_eid(organization_eid) new_membership = OrganizationMembership( organization_eid=organization.entity_id, user_eid=user.entity_id, title=title) new_membership.tags = [get_tag_by_id(tag_id) for tag_id in tag_ids] crud.add(new_membership) and here is the lookup by ID query: def by_student_id(student_id, include_disabled=False): """Get User by RIN""" try: return get_query_set(include_disabled).filter(User.student_id == student_id).one() except NoResultFound: raise ObjectNotFoundError("User with RIN %s does not exist." % student_id)

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  • beautifulsoup can't find exist href in file

    - by young001
    I have a html file like following: <form action="/2811457/follow?gsid=3_5bce9b871484d3af90c89f37" method="post"> <div> <a href="/2811457/follow?page=2&amp;gsid=3_5bce9b871484d3af90c89f37">next_page</a> &nbsp;<input name="mp" type="hidden" value="3" /> <input type="text" name="page" size="2" style='-wap-input-format: "*N"' /> <input type="submit" value="jump" />&nbsp;1/3 </div> </form> how to extract the "1/3" from the file? It is a part of html,I intend to make it clear. When I use beautifulsoup, I'm new to beautifulsoup,and I have look the document,but still confused. how to extract"1/3" from the html file? total_urls_num = soup.find(re.compile('.*/d\//d.*')) doesn't work As JBernardo said,\d should be a number,When I change to .*\d/\d.*,it doesn't work too. my code: from BeautifulSoup import BeautifulSoup import re with open("html.txt","r") as f: response = f.read() print response soup = BeautifulSoup(response) delete_urls = soup.findAll('a', href=re.compile('follow\?page')) #works print delete_urls #total_urls_num = soup.find(re.compile('.*\d/\d.*')) total_urls_num = soup.find('input',style='submit') #can't work print total_urls_num

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  • add a decorate function to a class

    - by wiso
    I have a decorated function (simplified version): class Memoize: def __init__(self, function): self.function = function self.memoized = {} def __call__(self, *args, **kwds): hash = args try: return self.memoized[hash] except KeyError: self.memoized[hash] = self.function(*args) return self.memoized[hash] @Memoize def _DrawPlot(self, options): do something... now I want to add this method to a pre-esisting class. ROOT.TChain.DrawPlot = _DrawPlot when I call this method: chain = TChain() chain.DrawPlot(opts) I got: self.memoized[hash] = self.function(*args) TypeError: _DrawPlot() takes exactly 2 arguments (1 given) why doesn't it propagate self?

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  • Connecting slots and events in PyQt4 in a loop

    - by LukaD
    Im trying to build a calculator with PyQt4 and connecting the 'clicked()' signals from the buttons doesn't as expected. Im creating my buttons for the numbers inside a for loop where i try to connect them afterwards. def __init__(self): for i in range(0,10): self._numberButtons += [QPushButton(str(i), self)] self.connect(self._numberButtons[i], SIGNAL('clicked()'), lambda : self._number(i)) def _number(self, x): print(x) When I click on the buttons all of them print out '9'. Why is that so and how can i fix this?

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  • Append to list of lists

    - by Joel
    Hello, I am trying to build a list of lists using the following code: list=3*[[]] Now I am trying to append a string to the list in position 0: list[0].append("hello") However, instead of receiving the list [ ["hello"] , [], [] ] I am receiving the list: [ ["hello"] ,["hello"] , ["hello"] ] Am I missing something? Thanks, Joel

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  • differences between "d.clear()" and "d={}"

    - by Tshepang
    On my machine, the execution speed between "d.clear()" and "d={}" is over 100ns so am curious why one would use one over the other. import timeit def timing(): d = dict() if __name__=='__main__': t = timeit.Timer('timing()', 'from __main__ import timing') print t.repeat()

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  • passing self data into a recursive function

    - by user272689
    I'm trying to set a function to do something like this def __binaryTreeInsert(self, toInsert, currentNode=getRoot(), parentNode=None): where current node starts as root, and then we change it to a different node in the method and recursivly call it again. However, i cannot get the 'currentNode=getRoot()' to work. If i try calling the funcion getRoot() (as above) it says im not giving it all the required variables, but if i try to call self.getRoot() it complains that self is an undefined variable. Is there a way i can do this without having to specify the root while calling this method?

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  • pyInotify performance

    - by tranimatronic
    I have a very large directory tree I am wanting pyInotify to watch. Is it better to have pyInotify watch the entire tree or is it better to have a number of watches reporting changes to specific files ? Thanks

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  • What does "str indices must be integers" mean?

    - by digitala
    I'm working with dicts in jython which are created from importing/parsing JSON. Working with certain sections I see the following message: TypeError: str indices must be integers This occurs when I do something like: if jsondata['foo']['bar'].lower() = 'baz': ... Where jsondata looks like: {'foo': {'bar':'baz'} } What does this mean, and how do I fix it?

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  • Where do files included in MANIFEST.in end up?

    - by Brian Hicks
    I'm not sure if I can't find this or if my google-fu is just lacking at the moment: I've got some HTML template files included in a package, with the following MANIFEST.in: recursive-include flockdoc/templates *.html In development, I'm including these (for Jinja) by doing path calculations, assuming that the "templates" directory is next to a certain file. When the package is installed with setup.py (using setuptools) the templates aren't copied into site-packages with the code. I understand that they're supposed to be somewhere like dist-packages, but none of the documentation I can find is pointing me to where the actual files are. It's also not giving me "best practice" for including these in my code. Any suggestions would be welcome there. the setup.py in question So: where are my files?

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  • Django: Update order attribute for objects in a queryset

    - by lazerscience
    I'm having a attribute on my model to allow the user to order the objects. I have to update the element's order depending on a list, that contains the object's ids in the new order; right now I'm iterating over the whole queryset and set one objects after the other. What would be the easiest/fastest way to do the same with the whole queryset? def update_ordering(model, order): """ order is in the form [id,id,id,id] for example: [8,4,5,1,3] """ id_to_order = dict((order[i], i) for i in range(len(order))) for x in model.objects.all(): x.order = id_to_order[x.id] x.save()

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  • What did I do wrong with this function?

    - by Felipe Galdino Campos
    I don't know what I did - it's wrong . Can someone help me? def insert_sequence(dna1, dna2, number): '''(str, str, int) -> str Return the DNA sequence obtained by inserting the second DNA sequence at the given index. (You can assume that the index is valid.) >>> insert_sequence('CCGG', 'AT', 2) 'CCATGG' >>> insert_sequence('TTGC', 'GG', 2) 'TTGGGC' ''' index = 0 result = ''; for string in dna1: if index == number: result = result + dna2 result = result + string index += 1 print(result)

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  • Does this introduce security vulnerabilities?

    - by mcmt
    I don't think I'm missing anything. Then again I'm kind of a newbie. def GET(self, filename): name = urllib.unquote(filename) full = path.abspath(path.join(STATIC_PATH, filename)) #Make sure request is not tricksy and tries to get out of #the directory, e.g. filename = "../.ssh/id_rsa". GET OUTTA HERE assert full[:len(STATIC_PATH)] == STATIC_PATH, "bad path" return open(full).read()

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  • Reading path in templates

    - by DJPython
    Hello, is it any way to read path to current page? For example, I am at www.example.com/foo/bar/ - and I want to read '/foo/bar/'. But, all have to be done in template file without modyficating views. I have to many view files to edit each one. Sorry for my english, hope everyone understand. Cheers.

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  • How do I upload a files to google app engine app when field name is not known

    - by Michael Neale
    I have tried a few options, none of which seem to work (if I have a simple multipart form with a named field, it works well, but when I don't know the name I can't just grab all files in the request...). I have looked at http://stackoverflow.com/questions/81451/upload-files-in-google-app-engine and it doesn't seem suitable (or to actually work, as someone mentioned the code snipped it untested).

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  • App Engine Bulkloader

    - by gurkan
    Hi all, I am trying to use Bulkloader of google app engine but unfortunately could not understand what to do from documentation. It says add this part to app.yaml builtins: - remote_api: on ok i have added. Then says that i have to execute this command appcfg.py update but i don't have any appcfg.py file. And also what is the command which executes this line? Please somebody tell me what i am missing I use AppEngineLauncher to upload my project to server.. I have naver used a command to update or upload it. Thanks in advance..

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  • Pyqt - QMenu dynamically populated and clicked

    - by mleep
    I need to be able to know what item I've clicked in a dynamically generated menu system. I only want to know what I've clicked on, even if it's simply a string representation. def populateShotInfoMenus(self): self.menuFilms = QMenu() films = self.getList() for film in films: menuItem_Film = self.menuFilms.addAction(film) self.connect(menuItem_Film, SIGNAL('triggered()'), self.onFilmSet) self.menuFilms.addAction(menuItem_Film) def onFilmRightClick(self, value): self.menuFilms.exec_(self.group1_inputFilm.mapToGlobal(value)) def onFilmSet(self, value): print 'Menu Clicked ', value

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  • Test assertions for tuples with floats

    - by Space_C0wb0y
    I have a function that returns a tuple that, among others, contains a float value. Usually I use assertAlmostEquals to compare those, but this does not work with tuples. Also, the tuple contains other data-types as well. Currently I am asserting every element of the tuple individually, but that gets too much for a list of such tuples. Is there any good way to write assertions for such cases?

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