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  • Fully FOSS EMail solution

    - by Ravi
    I am looking at various FOSS options to build a robust EMail solution for a government funded university. Commercial options are to be chosen only in the worst case scenario. Here are the requirements: Approx 1000-1500 users - Postfix or Exim? (Sendmail is out;-)) Mailing lists for different groups/Need web based archive - Mailman? Sympa? Centralised identity store - OpenLDAP? Fedora 389DS? Secure IMAP only - no POP3 required - Courier? Dovecot? Cyrus?? Anti Spam - SpamAssasin? what else? Calendaring - ?? webmail - good to have, not mandatory - needs to be very secure...so squirrelmail is out;-)? Other questions: What mailbox storage format to use? where to store? database/file system? Simple and effective HA options? Is there a web proxy equivalent to squid in the mail server world? software load balancers?CARP? Monitoring and alert? Backup? The govt wants to stimulate the local economy by buying hardware locally from whitebox vendors. Also local consultants and university students will do the integration. We looked at out-of-the-box integrated solutions like Axigen, Zimbra and GMail but each was ruled out in favour of a DIY approach in the hopes of full control over the data and avoiding vendor lockin - which i though was a smart thing to do. I wish more provincial governments in the developing world think of these sort of initiatives As for OS - Debian, FreeBSD would be first preference. Commercial OS's need not apply. CentOS as second tier option...

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  • Ubuntu questions - important

    - by asdasd
    They had installed some modified edubuntu's at school... So i have some questions about setting some things up: How we can play HD videos ? They are made for windows machines and are in .wmv format but we need to play them on our multimedia class but don't know how - which player, which codecs etc. How to edit properly the /etc/apt/sources file ? Anything we try to install via apt-get it just says that E:\ is not available. Please tell me which repositories to put in there so we could be able to install some tools. Where are usually viruses/trojans put in ubuntu ? I mean in which directories ? Because our computers are behaving really slow and we need to check for some malware manually - we are not even allowed to install any kind of AV software. So tell me the usual directories and places for hiding such files, how are they hiddem, how to recognize them etc. Any others nice tricks/tips that we need to know. Thank you very much in advance.

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  • Monitoring multiple sites on a single server using OpsView

    - by Kev
    We have several web servers. On each of these servers there can be ~250 web sites. I need to add a HTTP check for each site on each server. Each site has a reserved host header that we know can always be resolved in the format of: w10000.hostchecks.mycompany.com w10020.hostchecks.mycompany.com w11992.hostchecks.mycompany.com ..and so on.. What I want is for there to be a master ping check on the web server's main IP address and then separate HTTP checks for each of the sites on the server. If the master ping test fails then I want the HTTP tests to cease until the master ping check goes OK. I had a stab at this and tried do the following: Create a parent host that does a ping check on the server's main ip address (e.g. server is named WEB0001). For each of the sites that reside on WEB0001: Create a separate Host with a Primary Hostname of wXXXXX.hostchecks.mycompany.com Make WEB0001 the parent host Add a monitor (HTTP check to a special url that is mapped into each site using a virtual directory: H- $HOSTADDRESS$ -u /__hostcheck/IsAlive.aspx -w 5 -c 10 -p 80 However I find that if I down the parent server (WEB0001) the http checks seem to continue. Am I going about this completely the wrong way?

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  • How can I recover XFS partitions from a formatted HD?

    - by giuprivite
    I deleted the partition table of my HD. I wanted to format another one, but by mistake, I formatted the wrong one. Then I also created some new partition on it. Now I would like, if possible, to recover my old data. The old configuration was this: A primary NTFS partition with Windows, and a secondary partition with four logical partitions: a swap and three XFS partitions (two for Ubuntu and OpenSuSE, and one with the home for both systems). This is the output I get when I run gpart in a terminal: ubuntu@ubuntu:~$ sudo gpart /dev/sdb Begin scan... Possible partition(Windows NT/W2K FS), size(39997mb), offset(0mb) Possible extended partition at offset(39997mb) Possible partition(Linux swap), size(8189mb), offset(39997mb) Possible partition(SGI XFS filesystem), size(40942mb), offset(48187mb) Possible partition(SGI XFS filesystem), size(40942mb), offset(89149mb) Possible partition(SGI XFS filesystem), size(175044mb), offset(130112mb) End scan. Checking partitions... Partition(OS/2 HPFS, NTFS, QNX or Advanced UNIX): primary Partition(Linux swap or Solaris/x86): logical Partition(Linux ext2 filesystem): logical Partition(Linux ext2 filesystem): orphaned logical Partition(Linux ext2 filesystem): orphaned logical Ok. Guessed primary partition table: Primary partition(1) type: 007(0x07)(OS/2 HPFS, NTFS, QNX or Advanced UNIX) size: 39997mb #s(81915360) s(63-81915422) chs: (0/1/1)-(1023/254/63)d (0/1/1)-(5098/254/51)r Primary partition(2) type: 015(0x0F)(Extended DOS, LBA) size: 265245mb #s(543221849) s(81915435-625137283) chs: (1023/254/63)-(1023/254/63)d (5099/0/1)-(38912/254/2)r Primary partition(3) type: 000(0x00)(unused) size: 0mb #s(0) s(0-0) chs: (0/0/0)-(0/0/0)d (0/0/0)-(0/0/0)r Primary partition(4) type: 000(0x00)(unused) size: 0mb #s(0) s(0-0) chs: (0/0/0)-(0/0/0)d (0/0/0)-(0/0/0)r Looking the first eight lines, it seems the data are still there... but I don't know how to recover them. I have a free second HD of about 500 GB (the formatted one is 320 GB) that I can use for the recovery process.

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  • Libvirt / QEmu Machine Fails and Refuses Restart Because of Memory Allocation Errors

    - by Elmar Weber
    I'm having a problem with libvirt. On a system restart all virtual machines (VMs) are started without a problem and keep running. Then at some point in time a set of machines shuts down according to their log. When I try to restart the machine, I'm getting an error that the memory allocation failed, although more than enough memory is free. server ~ # free total used free shared buffers cached Mem: 16176648 16025476 151172 0 285432 950300 -/+ buffers/cache: 14789744 1386904 Swap: 0 0 0 server ~ # virsh start zimbra error: Failed to start domain zimbra error: Unable to read from monitor: Connection reset by peer server ~ # tail -n 4 /var/log/libvirt/qemu/zimbra.log LC_ALL=C PATH=/usr/local/sbin:/usr/local/bin:/usr/bin:/usr/sbin:/sbin:/bin QEMU_AUDIO_DRV=none /usr/bin/kvm -S -M pc-0.12 -enable-kvm -m 3072 -smp 2,sockets=2,cores=1,threads=1 -name zimbra -uuid d05ddb7a-83c4-a77b-d8bc-a322648520cf -nodefconfig -nodefaults -chardev socket,id=charmonitor,path=/var/lib/libvirt/qemu/zimbra.monitor,server,nowait -mon chardev=charmonitor,id=monitor,mode=control -rtc base=utc -no-shutdown -drive file=/var/lib/libvirt/images/zimbra.img,if=none,id=drive-ide0-0-0,format=raw -device ide-drive,bus=ide.0,unit=0,drive=drive-ide0-0-0,id=ide0-0-0,bootindex=1 -netdev tap,fd=19,id=hostnet0 -device rtl8139,netdev=hostnet0,id=net0,mac=52:54:00:21:a9:ad,bus=pci.0,addr=0x3 -chardev pty,id=charserial0 -device isa-serial,chardev=charserial0,id=serial0 -usb -vnc 192.168.1.2:25 -k de -vga cirrus -device virtio-balloon-pci,id=balloon0,bus=pci.0,addr=0x4 char device redirected to /dev/pts/2 Failed to allocate 3221225472 B: Cannot allocate memory 2012-07-06 08:42:56.076+0000: shutting down server ~ # uname -a Linux server 3.2.0-26-generic #41-Ubuntu SMP Thu Jun 14 17:49:24 UTC 2012 x86_64 x86_64 x86_64 GNU/Linux The system is a Ubuntu 12.04 server. The problem seems to occurs since the last restart, which was due to a number of package upgrades and a kernel upgrade. I tried booting with the previous kernel, the problem persists. I was not able to pinpoint an exact event when the machines fail, they do it at nearly the same time. The last time a duplicity job was running, this was not always the case however. Any suggestions on how to debug this? Best regards, elm

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  • ffmpeg: converting an avi to a reduced, shareable flv/mp4...

    - by meder
    I recently followed a guide and recompiled my ffmpeg so x264 is enabled. I used some generic settings to convert my 700 MB avi file to a mp4 file, the result was a 407MB mp4 file. The original avi file's settings: Codec: DX50 Resolution: 704x304 Frame rate: 23.976023 Stream 1 Codec: mpga Type: Audio Channels: 2 Sample rate: 48000 Hz Bitrate 179 kb/s Command I used: ffmpeg -i input.avi -acodec libfaac -ab 128k -ac 2 -vcodec libx264 -vpre hq -crf 22 -threads 0 output.mp4 The settings of the output file (output.mp4): Codec: avc1 Resolution: 704x304 Display resolution: 704x304 Frame rate: 11.988011 Stream 1 Codec: mp4a Type: Audio Channels: 2 Sample Rate: 48000 Hz Bits per sample: 16 Bitrate: 1536 kb/s The quality of the output mp4 is pretty nice, it seems as if it's pretty much the same as the original source. However, I'm trying to reduce the filesize and I'm not really sure whether I should go with an flv format or keep it mp4. The advantage the flv would have obviously is that it would be playable with a flash player ( I have come across some swf players which take a flash parameter to play an flv file ).. but maybe I could use the video element, as I'm only going to be displaying this video privately so I don't have to worry about supporting legacy browsers such as IE. Can someone recommend some settings to specify in order for the filesize to be around ~100-150MB or so? I don't mind a reduction in quality, nor do I mind resizing it - I was going to do it initially but I wasn't sure what the guidelines were ( if any ) for dealing with resolution.. since this video's is 704x304 would it still be ok if I forced it into one that isn't perfectly fit for the aspect ratio? I have no clue about that part. I realize that I could have probably specified 28 instead of 22 for the CRF, I'm not sure if I should do that as opposed to maybe specifying smaller resolution, which might make it smaller as well?

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  • ESXi 4.1 host not recognising existing VMFS datastore

    - by ThatGraemeGuy
    Existing setup: host1 and host2, ESX 4.0, 2 HBAs each. lun1 and lun2, 2 LUNs belonging to the same RAID set (my terminology might be sketchy here). This has been working just fine all along. I added host3, ESXi 4.1, 2 HBAs. If I view Configuration / Storage Adapters, I can see that both HBAs see both LUNs, but if I view Configuration / Storage, I only see 1 datastore. host1/2 can see both LUNs and I have VMs running on both too. I have rescanned, refreshed and even rebooted, but host3 refuses to acknowledge 1 of the datastores. Does anyone know what's going on? Update: I re-installed the host with ESX (not i) 4.0, same version as the existing hosts and it's still not recognising the vmfs. I think I'm going to SVmotion everything off that datastore then format it. Update2: I've created the LUN from scratch and the problem gets even weirder. I've presented the LUN to all 3 hosts, and I can see the LUN in the vSphere client's Configuration / Storage Adapters section on all 3 hosts. If I create a datastore on the LUN via the Configuration / Storage section on host1, it works fine and I can create an empty folder via datastore browser, but the datastore is not seen by the host2 and host3. I can use the Add Storage wizard on host2 and it will see the LUN. At this point the "VMFS Label" column has the label I gave with "(head)" appended. If I try the Add Storage wizard's "Keep the existing signature" option, it fails with an error "Cannot change the host configuration." and a dialog box that says 'Call "HostStorageSystem.ResolveMultipleUnresolvedVmfsVolumes" for object "storageSystem-17" on vCenter Server "vcenter.company.local" failed.' If I try the Add Storage wizard's "Assign a new signature" option on host2, it will complete and the VMFS label will have "snap-(hexnumber)-" prepended. At this point its also visible on host3, but not host1. I have a similar setup in a different datacenter which didn't give me all this trouble.

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  • How to open semicolon delimited CSV-files in US-version of Excel

    - by Holgerwa
    When I double-click on a .csv file, it is opened in Excel. The csv-files have columns delimited with semicolons (not commas, but also a valid format). Using a German Windows/Excel setup, the opened file is displayed correctly, the columns are separated where the semicolons existed in the csv-file. But when I do the same on an (US-) English Windows/Excel setup, only one column is imported, showing the whole data including the semicolons in the first column. (I don't have an English setup available for tests, users have reported the behavior) I tried to change the list separator value in Windows regional settings, but that didn't change anything. What can I do to be able to double-click-open those CSV-files on an English setup? EDIT: It seems to be the best solution not to rely on CSV-files in this case. I was hoping that there is some formatting for CSV-files that makes it possible to use them internationally. The best solution seems that I'll switch to creating XLS-files. Thanks to all for your suggestions and helpful tips!

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  • Which is the fastest way to move 1Petabyte from one storage to a new one?

    - by marc.riera
    First of all, thanks for reading, and sorry for asking something related to my job. I understand that this is something that I should solve by myself but as you will see its something a bit difficult. A small description: Now Storage = 1PB using DDN S2A9900 storage for the OSTs, 4 OSS , 10 GigE network. (lustre 1.6) 100 compute nodes with 2x Infiniband 1 infiniband switch with 36 ports After Storage = Previous storage + another 1PB using DDN S2A 990 or LSI E5400 (still to decide) (lustre 2.0) 8 OSS , 10GigE network 100 compute nodes with 2x Infiniband Previous experience: transfered 120 TB in less than 3 days using following command: tar -C /old --record-size 2048 -b 2048 -cf - dir | tar -C /new --record-size 2048 -b 2048 -xvf - 2>&1 | tee /tmp/dir.log So , big problem here, using big mathematical equations I conclude that we are going to need 1 month to transfer the data from one side to the new one. During this time the researchers will need to step back, and I'm personally not happy with this. I'm telling you that we have infiniband connections because I think that may be there is a chance to use it to transfer the data using 18 compute nodes (18 * 2 IB = 36 ports) to transfer the data from one storage to the other. I'm trying to figure out if the IB switch will handle all the traffic but in case it just burn up will go faster than using 10GigE. Also, having lustre 1.6 and 2.0 agents on same server works quite well, with this there is no need to go by 1.8 to upgrade the metadata servers with two steps. Any ideas? Many thanks Note 1: Zoredache, we can divide it in two blocks (A)600Tb and (B)400Tb. The idea is to move (A) to new storage which is lustre2.0 formated, then format where (A) was with lustre2.0 and move (B) to this lustre2.0 block and extend with the space where (B) was. This way we will end with (A) and (B) on separate filesystems, with 1PB each.

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  • ESXi - change to thin - virtual disk filesize is the same

    - by sven
    running ESXi 5.5 here with a datastore on a single SSD. Now, I thought about changing to thin disks from thick and found that I could use a tool on the ESXi host to do that. However, the file size of the new created virtual disk is not changing. I run: vmkfstools -i loader.vmdk -d 'thin' thinloader.vmdk Destination disk format: VMFS thin-provisioned Cloning disk 'loader.vmdk'... Clone: 100% done. After that I compared the virtual disksizes: ls -la *.vmdk -rw------- 1 root root 32212254720 Jun 10 08:25 loader-flat.vmdk -rw------- 1 root root 467 May 21 17:04 loader.vmdk -rw------- 1 root root 32212254720 Jun 10 08:27 thinloader-flat.vmdk -rw------- 1 root root 520 Jun 10 08:33 thinloader.vmdk Stats on the original file: stat loader.vmdk File: loader.vmdk Size: 467 Blocks: 0 IO Block: 131072 regular file Device: 8bf64d175e27544ch/10085333178302026828d Inode: 419443780 Links: 1 Access: (0600/-rw-------) Uid: ( 0/ root) Gid: ( 0/ root) Access: 2014-01-25 10:17:34.000000000 Modify: 2014-05-21 17:04:06.000000000 Change: 2014-05-21 17:04:06.000000000 and on the thin file: stat thinloader.vmdk File: thinloader.vmdk Size: 520 Blocks: 0 IO Block: 131072 regular file Device: 8bf64d175e27544ch/10085333178302026828d Inode: 432026692 Links: 1 Access: (0600/-rw-------) Uid: ( 0/ root) Gid: ( 0/ root) Access: 2014-06-10 08:27:45.000000000 Modify: 2014-06-10 08:33:30.000000000 Change: 2014-06-10 08:33:30.000000000 Anyone an idea why the disk is not providing any more space (tried with multiple VM's already - all the same)? Also, I have noticed that the newly created file "autoappend" "-flat" to the disk ... Thanks Sven Update - diff of the vmdk config* --- loader.vmdk +++ thinloader.vmdk @@ -7,15 +7,17 @@ createType="vmfs" -RW 62914560 VMFS "loader-flat.vmdk" +RW 62914560 VMFS "thinloader-flat.vmdk" ddb.adapterType = "lsilogic" +ddb.deletable = "true" ddb.geometry.cylinders = "3916" ddb.geometry.heads = "255" ddb.geometry.sectors = "63" ddb.longContentID = "6d95855805dfa0079327dfee29b48dca" -ddb.uuid = "60 00 C2 98 d5 7d 17 bf-ac 54 70 b1 2d 39 43 d5" +ddb.thinProvisioned = "1" +ddb.uuid = "60 00 C2 93 c4 13 6c cf-bb 7b 34 c9 2c b4 dc 1e" ddb.virtualHWVersion = "8"

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  • Trouble cloning a Macbook Pro hard drive

    - by Mirko Froehlich
    I am trying to upgrade the 250GB hard drive in my MacBook Pro (early 2008 model) to a 750GB drive. I have connected the new drive via an external USB enclosure. The drive is recognized fine, I can format it, etc. However, every time I try to clone the drive, I am getting Input/Output errors. Before the clone operation, I have verified both the internal and the external drive using Disk Utility, and they both check out fine. After the clone operation, the external drive shows multiple "Invalid node structure" errors: I have tried two approaches for cloning the drive: Using Disk Utility, by starting from the OSX install DVD Using Carbon Copy Cloner The outcome is the same in both cases. The Carbon Copy Cloner logs show a handful of the following types of errors: rsync: mkstemp "<... an external filename ...>" failed: Input/output error (5) rsync: stat "<... an external filename ...>" failed: Input/output error (5) The actual files affected seem to be different across different runs of the application. Before the last run, I used Disk Utility to (once more) reformat the external drive and explicitly overwrite it with zeros, but this made no difference. I also tried running a surface scan in Tech Tool Pro overnight. It got about 2/3 of the way through before I had to disconnect the drive (had to take my MacBook Pro to work), but so far it didn't report any bad blocks. Assuming it scans the drive in the same order in which blocks would be allocated during actual use, it seems like if bad blocks were to blame for the clone failures, they should have been found already (given that the source drive is only 250GB). As a last attempt, I may try SuperDuper as well, although my understanding is that it uses the same underlying rsync approach as Carbon Copy Cloner, so it's unlikely to perform any better. Are there any other things I should try before I send the drive in for a replacement? Could these problems be caused by my internal drive, even though it works fine and checks out fine in Disk Utility?

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  • Cross OS data recover question, USB drive involved.

    - by Moshe
    Here's the story: A MacBook had OS X 10.4 and Windows XP dual booting using rEFIt. Then the Windows partition gets corrupted and it won't boot. Presumably a virus. There were sensitive files there and those were successfully copied to a USB drive and then 10.5 was installed on the hard drive, formatting the drive in the process. The USB drive's contacts cracked and he data is lost from there, unless it can be resoldered. The issues is that there is too much solder there already. So, how can the data in question be recovered? The files were Microsoft Money (not the latest version) files for the Windows version of the program. Right now, only OS X is installed on the MacBook. Is there Mac based program that can recover the Windows data or am I better off trying to resolder the drive? Does anyone know how to best resolder a USB drive more than once, where the first solder is ther, but detached from the silicon? Also, what format (extension) are Microsoft Money files? In need of help!

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  • Disable the user of Internet explorer through policies when called from HTML help

    - by Stephane
    Hello, I have a locked down environment where users are prohibited from doing, well, basically anything but run the specific programs we specify. We just switched a program from using the venerable "WinHELP" help format to HTML help (CHM) but that seem to have an unwanted and rather dangerous side effect: when a user click on a hyperlink inside the HTML help, a new internet explorer window is opened and the user is free to browse and do terrible things to my server (well, not that much, but still...) I have checked the session in this case and the IE window is actually hosted within the help engine: there is no iexplore.exe process running in the user session (and it cannot: it's explicitly prohibited). We have disable all help right now until we find a solution. I'm working with the help team to have all external URLs removed from the help file but that is going to be a long and error-prone task. Meanwhile, I've checked all the group policies option but I have to say that I was unable to find anything that would prevent a standalone IE window hosted in a random process from running. I don't want to disable WinHTTP or the IE rendering engine or anything of the sort. But I need to prevent all users members of a specific AD user group from ever having an IE window displayed to them. The servers are running Windows 2003 and Citrix metaframe 4.5. Thanks in advance

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  • cannot commit svn with dav on ubuntu

    - by hiddenkirby
    So there are several similar questions on serverfault ... but the solution is still eluding me. I am running subversion on ubuntu 9.04 .. through apache2.2.x .... i get Commit failed (details follow): Can't make directory '/home/kirb/svn/dav/activities.d': Permission denied when i attempt to commit. It is deffinitely a permissions issue... but how to fix it is still eluding me. my repository is in /home/kirb/svn. http://serverfault.com/questions/61573/svn-commit-error says to chgrp .. but i dont seem to be able to. all the apache dav stuff seems to be working though. I can access my repository just fine through a browser. apologies if i am missing something simple here. Thanks in advance, Kirb additional edit: i am not able to sudo chgrp on the directory at all sudo chgrp -R www-data /home/kirb/svn; chmod -R g+rwx /home/kirb/svn [sudo] password for kirb: chmod: changing permissions of/home/kirb/svn': Operation not permitted chmod: changing permissions of /home/kirb/svn/format': Operation not permitted chmod: changing permissions of/home/kirb/svn/conf': Operation not permitted chmod: cannot read directory /home/kirb/svn/conf': Permission denied chmod: changing permissions of/home/kirb/svn/locks': Operation not permitted chmod: cannot read directory /home/kirb/svn/locks': Permission denied chmod: changing permissions of/home/kirb/svn/db': Operation not permitted chmod: cannot read directory /home/kirb/svn/db': Permission denied chmod: changing permissions of/home/kirb/svn/README.txt': Operation not permitted chmod: changing permissions of /home/kirb/svn/hooks': Operation not permitted chmod: cannot read directory/home/kirb/svn/hooks': Permission denied`

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  • Postfix won't pipe to PHP file through aliases file

    - by jfreak53
    I'm trying to pipe from postfix to a command. According to Postfix logs it worked, but when I check the command it didn't. This is a fresh postfix install. This is my alias file: # See man 5 aliases for format postmaster: root support: "| /usr/bin/php -q /var/www/pipe/pipe.php" I run sendmail [email protected] then type it and then on a separate line type . and it goes. I check the postfix log /var/log/mail.log and this is what it states: Nov 2 15:32:33 server3 postfix/local[13284]: 42C429E0B5: to=<[email protected]>, relay=local, delay=156, delays=156/0.01/0/0.05, dsn=2.0.0, status=sent (delivered to command: /usr/bin/php -q /var/www/pipe/pipe.php) So according to that it worked, but it doesn't. If I run echo 'text' | /usr/bin/php -q /var/www/pipe/pipe.php it does work just fine. Any ideas what I did wrong? I know piping is working, I originally checked it by running that command above WITHOUT the quotes, so just support: | /usr/bin/php -q /var/www/pipe/pipe.php What it did there was append my email header and all to the file pipe.php. So I know postfix was piping it, but when I put in the quotes it says it's going but it's not according to my script.

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  • Interactive console based CSV editor

    - by Penguin Nurse
    Although spreadsheet applications for editing CSV files on the console used to be one of the earliest killer applications for personal computers, only few of them and even less documentation about them is still actively maintained. After having done extensive search on the web, manpages and source code, I ended up with the following three applications that all have fundamental drawbacks: sc: abbrev. for spreadsheet calculator; nice tool with vi keybings, but it does not put strings containing the delimiter into quotas when exporting to delimiter separated format and can't import csv files correctly, i.e. all numbers are interpreted as strings GNU oleo: doesn't seem to be actively maintained any longer since 2001 and there are therefore no packages for major linux distributions teapot: offers packages for various operating systems, but uses for example counter-intuitive naming for cells (numbers for row and column, i.e. 11 seems to be intended to be row 1, column 1) and superfluous code for FLTK GUI Various Emacs modes also do not quote strings containing the delimiter well or are require much more typing for entering the scaffold of a table. Therefore I would be very grateful for overcoming one of theses drawbacks or any hints towards another console based CSV editor. It actually needn't do any calculations just editing cells or column- and rowise.

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  • calculate AUC (GAM) in R [migrated]

    - by ahmad
    I used the following script to calculate AUC in R: library(mgcv) library(ROCR) library(AUC) data1=read.table("d:\\2005.txt", header=T) GAM<-gam(tuna ~ s(chla)+s(sst)+s(ssha),family=binomial, data=data1) gampred<- predict(GAM, type="response") rp <- prediction(gampred, data1$tuna) auc <- performance( rp, "auc")@y.values[[1]] auc roc <- performance( rp, "tpr", "fpr") plot( roc ) But when I was running the script, the result is: **rp <- prediction(gampred, data1$tuna) Error in prediction(gampred, data1$tuna) : Format of predictions is invalid. > > auc <- performance( rp, "auc")@y.values[[1]] Error in performance(rp, "auc") : object 'rp' not found > auc function (x, min = 0, max = 1) { if (any(class(x) == "roc")) { if (min != 0 || max != 1) { x$fpr <- x$fpr[x$cutoffs >= min & x$cutoffs <= max] x$tpr <- x$tpr[x$cutoffs >= min & x$cutoffs <= max] } ans <- 0 for (i in 2:length(x$fpr)) { ans <- ans + 0.5 * abs(x$fpr[i] - x$fpr[i - 1]) * (x$tpr[i] + x$tpr[i - 1]) } } else if (any(class(x) %in% c("accuracy", "sensitivity", "specificity"))) { if (min != 0 || max != 1) { x$cutoffs <- x$cutoffs[x$cutoffs >= min & x$cutoffs <= max] x$measure <- x$measure[x$cutoffs >= min & x$cutoffs <= max] } ans <- 0 for (i in 2:(length(x$cutoffs))) { ans <- ans + 0.5 * abs(x$cutoffs[i - 1] - x$cutoffs[i]) * (x$measure[i] + x$measure[i - 1]) } } return(as.numeric(ans)) } <bytecode: 0x03012f10> <environment: namespace:AUC> > > roc <- performance( rp, "tpr", "fpr") Error in performance(rp, "tpr", "fpr") : object 'rp' not found > plot( roc ) Error in levels(labels) : argument "labels" is missing, with no default** Can anybody help me to solve this problem? Thank you in advance.

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  • Hotmail marking messages as junk

    - by Canadaka
    I was having problems with emails sent from my server being blocked completely by Hotmail, but I found out Hotmail had blocked my IP and by contacting Hotmail I had the block removed. See this question for more info: Email sent from server with rDNS & SPF being blocked by Hotmail But now all emails from my server are going directly to recipients "Junk" folder on hotmail and I can't figure out why. Hotmail says "Microsoft SmartScreen marked this message as junk and we'll delete it after ten days." I tried contacting the same people at Hotmail who had my IP block removed, but I haven't received any reply and its been almost a week. Here are some details: I have a valid SPF record for my domain "v=spf1 a include:_spf.google.com ~all" I have reverse DNS setup I have a Sender Score of 100 https://www.senderscore.org/lookup.php?lookup=66.199.162.177&ipLookup.x=55&ipLookup.y=14 I have signed up for Microsoft's SNDS and was approved. My ip says "All of the specified IPs have normal status." Microsoft added my IP to the JMRP Database My IP is not on any credible spam lists http://www.anti-abuse.org/multi-rbl-check-results/?host=66.199.162.177 my FROM header is being sent in proper format "From: CKA <[email protected]>" Here is a test email source:

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  • How can I recover XFS partitions from a formatted HD?

    - by giuprivite
    I deleted the partition table of my HD. I wanted to format another one, but by mistake, I formatted the wrong one. Then I also created some new partition on it. Now I would like, if possible, to recover my old data. The old configuration was this: A primary NTFS partition with Windows, and a secondary partition with four logical partitions: a swap and three XFS partitions (two for Ubuntu and OpenSuSE, and one with the home for both systems). This is the output I get when I run gpart in a terminal: ubuntu@ubuntu:~$ sudo gpart /dev/sdb Begin scan... Possible partition(Windows NT/W2K FS), size(39997mb), offset(0mb) Possible extended partition at offset(39997mb) Possible partition(Linux swap), size(8189mb), offset(39997mb) Possible partition(SGI XFS filesystem), size(40942mb), offset(48187mb) Possible partition(SGI XFS filesystem), size(40942mb), offset(89149mb) Possible partition(SGI XFS filesystem), size(175044mb), offset(130112mb) End scan. Checking partitions... Partition(OS/2 HPFS, NTFS, QNX or Advanced UNIX): primary Partition(Linux swap or Solaris/x86): logical Partition(Linux ext2 filesystem): logical Partition(Linux ext2 filesystem): orphaned logical Partition(Linux ext2 filesystem): orphaned logical Ok. Guessed primary partition table: Primary partition(1) type: 007(0x07)(OS/2 HPFS, NTFS, QNX or Advanced UNIX) size: 39997mb #s(81915360) s(63-81915422) chs: (0/1/1)-(1023/254/63)d (0/1/1)-(5098/254/51)r Primary partition(2) type: 015(0x0F)(Extended DOS, LBA) size: 265245mb #s(543221849) s(81915435-625137283) chs: (1023/254/63)-(1023/254/63)d (5099/0/1)-(38912/254/2)r Primary partition(3) type: 000(0x00)(unused) size: 0mb #s(0) s(0-0) chs: (0/0/0)-(0/0/0)d (0/0/0)-(0/0/0)r Primary partition(4) type: 000(0x00)(unused) size: 0mb #s(0) s(0-0) chs: (0/0/0)-(0/0/0)d (0/0/0)-(0/0/0)r Looking the first eight lines, it seems the data are still there... but I don't know how to recover them. I have a free second HD of about 500 GB (the formatted one is 320 GB) that I can use for the recovery process.

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  • How to discover true identity of hard disk?

    - by F21
    I have 2 fake external hard drives that claim to have a storage capacity of 2TB. I pulled the enclosure apart and the hard drives seems to be refurbished ones with their labels replaced as Barracuda LP 2000 GB labels (the serial numbers on both labels are the same). Interestingly, one of the drives have 160G written on it with pencil. However, the counterfeiters seem to have done something to the firmware, because CrystalDiskInfo reports them as 2TB ST2000DL003 drives. I then delete the 1.81 TB partition in Windows disk management and tried to create a new one and format it. Once I get to this point, the drives would make some noise that is common to dying drives. I am not interested in using these drives for production, but I am interested in finding the true identity (manufacturer/serial number/model number, etc) and restoring it to their factory defaults with the right capacity. Can this be done without any special equipment? This would be an interesting learning exercise. Some pictures of the drives in question: Here are the screens from CrystalDiskInfo: Note the serial numbers are the same (these are 2 different drives!). How is this done? Did they have to tamper with the controller board? I would assume that changing the firmware doesn't change the serial number at all.

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  • How to disable irritating Office File Validation security alert?

    - by Rabarberski
    I have Microsoft Office 2007 running on Windows 7. Yesterday I updated Office to the latest service pack, i.e. SP3. This morning, when opening an MS Word document (.doc format, and a document I created myself some months ago) I was greeted with a new dialog box saying: Security Alert - Office File Validation WARNING: Office File Validation detected a problem while trying to open this file. Opening this is probably dangerous, and may allow a malicious user to take over your computer. Contact the sender and ask them to re-save and re-send the file. For more security, verify in person or via the phone that they sent the file. Including two links to some microsoft blabla webpage. Obviously the document is safe as I created it myself some months ago. How to disable this irritating dialog box? (On a sidenote, a rethorical question: Will Microsoft never learn? I consider myself a power user in Word, but I have no clue what could be wrong with my document so that it is considered dangerous. Let alone more basic users of Word. Sigh....)

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  • Can I tell if crashplan has backed up a particular file in a particular state?

    - by Chris Cogdon
    I would like to be able to tell, programmatically, if CrashPlan has backed-up a particular file, including the current updates to that file. I.e., that the current contents of a file are backed up. It's relatively easy to tell when CrashPlan last backed up a file: its file name appears in /usr/local/crashplan/log/backup_files.log.0, and with some accuracy, I could compare the backup time with the last modification time to the file, but that method appears to be somewhat dubious. A couple of methods I could think of, but I don't know how: Compare the current file to CrashPlan's metadata about that file. This needs knowledge about the format of CrashPlan's "cache" files as well as the hashing system used. This might be achievable through the CLI, but the CLI is just a portal into the GUI, and I need something that's scriptable. Restore the file to a temporary directory, and compare it. Unfortunately, there is no CLI to do restores; the GUI is the only way. I'll describe what I'm trying to achieve. It would be nice to know how to do the above, even if there are alternative methods for the following: I'm using CrashPlan for continuous backups to my PostgreSQL database, using WAL archives. In the current configuration, the archive command copies the files to an archive directory, which is backed up by CrashPlan. Every so often I manually confirm (or just trust) a group of WALs are backed up, and remove them from the archive directory, and occasionally do a restore through the GUI to ensure I can retrieve current and "deleted" WALs. The xlog directory is backed-up, too, so I have a good chance of doing a near-full restore even if a particular xlog hasn't been archived by PostgreSQL yet. I'd like to be able to automate this process, which necessitates either confirming the backup status and recency, or automating a restore for comparison purposes. (As a bonus, if the method is trustworthy, I could turn the "archive_command" from "copy to archive directory" into "confirm CrashPlan has backed up the current version", and do away with the archive directory completely). (And, yes, I'm doing regular pg_dumpall's, in addition to the above.)

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  • Recover NTFS data from a ZFS pool that was exposed as an iSCSI target

    - by David
    This was me being stupid and the data is by no means critical and is now a learning experience first, time saver second. I set up a 100GB iSCSI target via the bare bone instructions in napp-it. It's a volume LU. I then had my Windows 7 machine connect to the iSCSI target, formatted it to NTFS, and tested the performance of it with some large iso file transfers. I then unmapped the drive, reconnected to the target, and was forced to format to NTFS again. It was then I realized the files I had transferred only existed on the iSCSI target. I threw a little fit and then went about my business. When I was cleaning up my experiment I noticed in this screen: http://imgur.com/1xlcu.jpg That is my experimental target tank/iSCSI and it still has a lot of data in it. Assuming my isos are still in this pool how would I go about recovering them? While writing this I used GetDataBackup for NTFS from www.runtime.org. And while it found two previous NTFS partitions there was no data.

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  • Adding third disk as a single disk in a server with an existing RAID1

    - by slowhandsolo
    I've got a ProLiant DL360 G5 server (Fedora 13) with two SAS disks in a hardware RAID 1, working fine. Now I hot plugged another SAS disk. I'd like to configure this new hard disk out of my RAID, as a single non-RAID disk (ex. /dev/sdb). Even after rebooting the server, I can't see the new disk with "fdisk -l". It displays only my hardware RAID, but not the new disk. [root@myserver]# fdisk -l Disco /dev/cciss/c0d0: 300.0 GB, 299966445568 bytes Disposit. Inicio Comienzo Fin Bloques Id Sistema /dev/cciss/c0d0p1 * 1 126 512000 83 Linux /dev/cciss/c0d0p2 126 71798 292422656 8e Linux LVM Disco /dev/dm-0: 234.9 GB, 234881024000 bytes Disco /dev/dm-1: 10.5 GB, 10536091648 bytes Disco /dev/dm-2: 21.0 GB, 20971520000 bytes Disco /dev/dm-3: 31.5 GB, 31474057216 bytes Disco /dev/dm-4: 1577 MB, 1577058304 bytes However, I can see the new disk using the HP Array Configuration Utility CLI for Linux "hpacucli": [root@myserver]# hpacucli => controller slot=0 physicaldrive all show status physicaldrive 1I:1:1 (port 1I:box 1:bay 1, 300 GB): OK physicaldrive 1I:1:2 (port 1I:box 1:bay 2, 300 GB): OK physicaldrive 1I:1:3 (port 1I:box 1:bay 3, 300 GB): OK => controller slot=0 pd all show detail Smart Array P400i in Slot 0 (Embedded) array A physicaldrive 1I:1:1 Port: 1I Box: 1 Bay: 1 physicaldrive 1I:1:2 Port: 1I Box: 1 Bay: 2 **unassigned** physicaldrive 1I:1:3 Port: 1I Box: 1 Bay: 3 Status: OK Drive Type: **Unassigned Drive** As you can see, I've got two SAS disks in a RAID 1 and the new disk as "unassigned". Is there any way to work with the new disk as another non-RAID single disk? If relevant, I want to create a new partition in my new disk, format it with mkfs and mount it, but as I can't see it with fdisk, I don't know how to do it. Thanks!

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  • HTTP Error: 413 Request Entity Too Large

    - by Torben Gundtofte-Bruun
    What I have: I have an iPhone app that sends HTTP POST requests (XML format) to a web service written in PHP. This is on a hosted virtual private server so I can edit httpd.conf and other files on the server, and restart Apache. The problem: The web service works perfectly as long as the request is not too large, but around 1MB is the limit. After that, the server responds with: <!DOCTYPE HTML PUBLIC "-//IETF//DTD HTML 2.0//EN"> <html><head> <title>413 Request Entity Too Large</title> </head><body> <h1>Request Entity Too Large</h1> The requested resource<br />/<br /> does not allow request data with POST requests, or the amount of data provided in the request exceeds the capacity limit. </body></html> The web service writes its own log file, and I can see that small messages are processed fine. Larger messages are not logged at all so I guess that something in Apache rejects them before they even reach the web service? Things I've tried without success: (I've restarted Apache after every change. These steps are incremental.) hosting provider's web-based configuration panel: disable mod_security httpd.conf: LimitXMLRequestBody 0 and LimitRequestBody 0 httpd.conf: LimitXMLRequestBody 100000000 and LimitRequestBody 100000000 httpd.conf: SecRequestBodyLimit 100000000 At this stage, Apache's error.log contains a message: ModSecurity: Request body no files data length is larger than the configured limit (1048576) It looks like my step #4 didn't really take, which is consistent with step #1 but does not explain why mod_security appears to be active after all. What more can I try, to get the web service to receive large messages?

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