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  • Is there a Pair-Wise PostHoc Comparisons for the Chi-Square Test in R?

    - by Tal Galili
    Hi all, I am wondering if there exists in R a package/function to perform the: "Post Hoc Pair-Wise Comparisons for the Chi-Square Test of Homogeneity of Proportions" (or an equivalent of it) Which is described here: http://epm.sagepub.com/cgi/content/abstract/53/4/951 My situation is of just making a chi test, on a 2 by X matrix. I found a difference, but I want to know which of the columns is "responsible" for the difference. Thanks, Tal

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  • selecting the pixels from an image in opencv

    - by ajith
    hi everyone, this is refined version of my previous question http://stackoverflow.com/questions/2602628/computing-matting-laplacian-matrix-of-an-image actually i want to do following operation... summation for all k|(i,j)?wk [(Ii-µk)*(Ij-µk)]...where wk is 3X3 window & µk is mean of wk...here i dont know how to select Ii & Ij separately from an image which is 2 dimensional[Iij]...or does the eqn means anything else??please someone help me..

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  • Creating a Colormap Legend in Matplotlib

    - by Vince
    Hi fellow Stackers! I am using imshow() in matplotlib like so: import numpy as np import matplotlib.pyplot as plt mat = '''SOME MATRIX''' plt.imshow(mat, origin="lower", cmap='gray', interpolation='nearest') plt.show() How do I add a legend showing the numeric value for the different shades of gray. Sadly, my googling has not uncovered an answer :( Thank you in advance for the help. Vince

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  • Compatibility between JBoss Cache to JBoss Server

    - by Spiderman
    Our application runs succesfully on Tomcat, Websphere and Weblogic and as part of it uses Jboss Cache version 3.1.0.G. Now we would like adjust our app to run also in Jboss server environment. Is there any Jboss server version that can co-exist working together with JBoss cache of this version (3.1)? I couldn't find a match in a compatibility matrix that Jboss publish here: http://www.jboss.org/jbosscache/compatibility.html Related issue (http://stackoverflow.com/questions/2849036/configure-jboss-cache-to-run-on-jboss-server-4-2-3-ga)

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  • Python: unable to inherit from a C extension.

    - by celil
    I am trying to add a few extra methods to a matrix type from the pysparse library. Apart from that I want the new class to behave exactly like the original, so I chose to implement the changes using inheritance. However, when I try from pysparse import spmatrix class ll_mat(spmatrix.ll_mat): pass this results in the following error TypeError: Error when calling the metaclass bases cannot create 'builtin_function_or_method' instances What is this causing this error? Is there a way to use delegation so that my new class behaves exactly the same way as the original?

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  • wrapping boost::ublas with swig

    - by leon
    I am trying to pass data around the numpy and boost::ublas layers. I have written an ultra thin wrapper because swig cannot parse ublas' header correctly. The code is shown below #include <boost/numeric/ublas/vector.hpp> #include <boost/numeric/ublas/matrix.hpp> #include <boost/lexical_cast.hpp> #include <algorithm> #include <sstream> #include <string> using std::copy; using namespace boost; typedef boost::numeric::ublas::matrix<double> dm; typedef boost::numeric::ublas::vector<double> dv; class dvector : public dv{ public: dvector(const int rhs):dv(rhs){;}; dvector(); dvector(const int size, double* ptr):dv(size){ copy(ptr, ptr+sizeof(double)*size, &(dv::data()[0])); } ~dvector(){} }; with the SWIG interface that looks something like %apply(int DIM1, double* INPLACE_ARRAY1) {(const int size, double* ptr)} class dvector{ public: dvector(const int rhs); dvector(); dvector(const int size, double* ptr); %newobject toString; char* toString(); ~dvector(); }; I have compiled them successfully via gcc 4.3 and vc++9.0. However when I simply run a = dvector(array([1.,2.,3.])) it gives me a segfault. This is the first time I use swigh with numpy and not have fully understanding between the data conversion and memory buffer passing. Does anyone see something obvious I have missed? I have tried to trace through with a debugger but it crashed within the assmeblys of python.exe. I have no clue if this is a swig problem or of my simple wrapper. Anything is appreciated.

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  • boost ublas: rotate 2d vector

    - by AndreasT
    Erm. I hope I am seriously overlooking something. I want to rotate a 2d vector (kartesian) v by a certain angle phi. I can't find a function that generates the appropriate matrix or just performs that function. I know how to do this by hand. I am looking for a ublas utility "something" that does this for me.

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  • Sliding window algorithm for activiting recognition MATLAB

    - by csc
    I want to write a sliding window algorithm for use in activity recognition. The training data is <1xN so I'm thinking I just need to take (say window_size=3) the window_size of data and train that. I also later want to use this algorithm on a matrix . I'm new to matlab so i need any advice/directions on how to implement this correctly.

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  • matlab write image into eps file

    - by Tim
    In MATLAB, how do you write a matrix into an image of eps format? It seems imwrite does not support eps? convert is not working on the Linux server I am using $ convert exploss_stumps.jpg exploss_stumps.eps convert: missing an image filename `exploss_stumps.eps' @ convert.c/ConvertImageCommand/2838 Any idea why?

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  • matplotlib analog of R's `pairs`

    - by bgbg
    R has a useful function pairs that provides nice matrix of plots of pairwise connections between variables in a data set. The resulting plot looks similar to the following figure, copied from this blog post: Is there any ready to use function based on python's matplolib? I have searched its gallery, but couldn't find anything that resembles what I need. Technically, this should be a simple task, but proper handling of all the possible cases, labels, titles, etc is very tedious.

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  • Can't compare the norm of a vector to 1 in matlab

    - by Ian
    I'm trying to find out wether a matrix is orthonormal. I begin by checking if the vectors are normal by doing for j=1:2; if norm(S:,j) ~= 1; return; % Not normal vector end end But when norm returns 1.0000 comparing that to 1 is true and the function returns, which is not what i want. Any ideas? Thx

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  • Creating a tiled world with OpenGL

    - by Tamir
    Hello, I'm planning to create a tiled world with OpenGL, with slightly rotated tiles and houses and building in the world will be made of models. Can anybody suggest me what projection(Orthogonal, Perspective) should I use, and how to setup the View matrix(using OpenGL)? If you can't figure what style of world I'm planning to create, look at this game: http://www.youtube.com/watch?v=i6eYtLjFu-Y&feature=PlayList&p=00E63EDCF757EADF&index=2

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  • Will these optimizations to my Ruby implementation of diff improve performance in a Rails app?

    - by grg-n-sox
    <tl;dr> In source version control diff patch generation, would it be worth it to use the optimizations listed at the very bottom of this writing (see <optimizations>) in my Ruby implementation of diff for making diff patches? </tl;dr> <introduction> I am programming something I have never done before and there might already be tools out there to do the exact thing I am programming but at this point I am having too much fun to care so I am still going to do it from scratch, even if there is a tool for this. So anyways, I am working on a Ruby on Rails app and need a certain feature. Basically I want each entry in a table of mine, let's say for example a table of video games, to have a stored chunk of text that represents a review or something of the sort for that table entry. However, I want this text to be both editable by any registered user and also keep track of different submissions in a version control system. The simplest solution I could think of is just implement a solution that keeps track of the text body and the diff patch history of different versions of the text body as objects in Ruby and then serialize it, preferably in human readable form (so I'll most likely use YAML for this) for editing if needed due to corruption by a software bug or a mistake is made by an admin doing some version editing. So at first I just tried to dive in head first into this feature to find that the problem of generating a diff patch is more difficult that I thought to do efficiently. So I did some research and came across some ideas. Some I have implemented already and some I have not. However, it all pretty much revolves around the longest common subsequence problem, as you would already know if you have already done anything with diff or diff-like features, and optimization the function that solves it. Currently I have it so it truncates the compared versions of the text body from the beginning and end until non-matching lines are found. Then it solves the problem using a comparison matrix, but instead of incrementing the value stored in a cell when it finds a matching line like in most longest common subsequence algorithms I have seen examples of, I increment when I have a non-matching line so as to calculate edit distance instead of longest common subsequence. Although as far as I can tell between the two approaches, they are essentially two sides of the same coin so either could be used to derive an answer. It then back-traces through the comparison matrix and notes when there was an incrementation and in which adjacent cell (West, Northwest, or North) to determine that line's diff entry and assumes all other lines to be unchanged. Normally I would leave it at that, but since this is going into a Rails environment and not just some stand-alone Ruby script, I started getting worried about needing to optimize at least enough so if a spammer that somehow knew how I implemented the version control system and knew my worst case scenario entry still wouldn't be able to hit the server that bad. After some searching and reading of research papers and articles through the internet, I've come across several that seem decent but all seem to have pros and cons and I am having a hard time deciding how well in this situation that the pros and cons balance out. So are the ones listed here worth it? I have listed them with known pros and cons. </introduction> <optimizations> Chop the compared sequences into multiple chucks of subsequences by splitting where lines are unchanged, and then truncating each section of unchanged lines at the beginning and end of each section. Then solve the edit distance of each subsequence. Pro: Changes the time increase as the changed area gets bigger from a quadratic increase to something more similar to a linear increase. Con: Figuring out where to split already seems like you have to solve edit distance except now you don't care how it is changed. Would be fine if this was solvable by a process closer to solving hamming distance but a single insertion would throw this off. Use a cryptographic hash function to both convert all sequence elements into integers and ensure uniqueness. Then solve the edit distance comparing the hash integers instead of the sequence elements themselves. Pro: The operation of comparing two integers is faster than the operation of comparing two strings, so a slight performance gain is received after every comparison, which can be a lot overall. Con: Using a cryptographic hash function takes time to convert all the sequence elements and may end up costing more time to do the conversion that you gain back from the integer comparisons. You could use the built in hash function for a string but that will not guarantee uniqueness. Use lazy evaluation to only calculate the three center-most diagonals of the comparison matrix and then only calculate additional diagonals as needed. And then also use this approach to possibly remove the need on some comparisons to compare all three adjacent cells as desribed here. Pro: Can turn an algorithm that always takes O(n * m) time and make it so only worst case scenario is that time, best case becomes practically linear, and average case is somewhere between the two. Con: It is an algorithm I've only seen implemented in functional programming languages and I am having a difficult time comprehending how to convert this into Ruby based on how it is described at the site linked to above. Make a C module and do the hard work at the native level in C and just make a Ruby wrapper for it so Ruby can make all the calls to it that it needs. Pro: I have to imagine that evaluating something like this in could be a LOT faster. Con: I have no idea how Rails handles apps with ruby code that has C extensions and it hurts the portability of the app. This is an optimization for after the solving of edit distance, but idea is to store additional combined diffs with the ones produced by each version to make a delta-tree data structure with the most recently made diff as the root node of the tree so getting to any version takes worst case time of O(log n) instead of O(n). Pro: Would make going back to an old version a lot faster. Con: It would mean every new commit, the delta-tree would get a new root node that will cost time to reorganize the delta-tree for an operation that will be carried out a lot more often than going back a version, not to mention the unlikelihood it will be an old version. </optimizations> So are these things worth the effort?

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  • GCC ABI compatibility

    - by Fredrik Ullner
    As far as I've understood, it is not possible to link libraries that use different versions of GCC's Application Binary Interface (ABI). Are there ABI changes to every version of GCC? Is it possible to link a library built with 4.3.1 if I use, say, GCC 4.3.2? Is there a matrix of some sort that lists all the ways I can combine GCC versions?

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  • How to interpret weka classification?

    - by gargi2010
    How can we interpret the classification result in weka using naive bayes? How is mean, std deviation, weight sum and precision calculated? How is kappa statistic, mean absolute error, root mean squared error etc calculated? What is the interpretation of the confusion matrix?

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  • difference equations in MATLAB - why the need to switch signs?

    - by jefflovejapan
    Perhaps this is more of a math question than a MATLAB one, not really sure. I'm using MATLAB to compute an economic model - the New Hybrid ISLM model - and there's a confusing step where the author switches the sign of the solution. First, the author declares symbolic variables and sets up a system of difference equations. Note that the suffixes "a" and "2t" both mean "time t+1", "2a" means "time t+2" and "t" means "time t": %% --------------------------[2] MODEL proc-----------------------------%% % Define endogenous vars ('a' denotes t+1 values) syms y2a pi2a ya pia va y2t pi2t yt pit vt ; % Monetary policy rule ia = q1*ya+q2*pia; % ia = q1*(ya-yt)+q2*pia; %%option speed limit policy % Model equations IS = rho*y2a+(1-rho)yt-sigma(ia-pi2a)-ya; AS = beta*pi2a+(1-beta)*pit+alpha*ya-pia+va; dum1 = ya-y2t; dum2 = pia-pi2t; MPs = phi*vt-va; optcon = [IS ; AS ; dum1 ; dum2; MPs]; He then computes the matrix A: %% ------------------ [3] Linearization proc ------------------------%% % Differentiation xx = [y2a pi2a ya pia va y2t pi2t yt pit vt] ; % define vars jopt = jacobian(optcon,xx); % Define Linear Coefficients coef = eval(jopt); B = [ -coef(:,1:5) ] ; C = [ coef(:,6:10) ] ; % B[c(t+1) l(t+1) k(t+1) z(t+1)] = C[c(t) l(t) k(t) z(t)] A = inv(C)*B ; %(Linearized reduced form ) As far as I understand, this A is the solution to the system. It's the matrix that turns time t+1 and t+2 variables into t and t+1 variables (it's a forward-looking model). My question is essentially why is it necessary to reverse the signs of all the partial derivatives in B in order to get this solution? I'm talking about this step: B = [ -coef(:,1:5) ] ; Reversing the sign here obviously reverses the sign of every component of A, but I don't have a clear understanding of why it's necessary. My apologies if the question is unclear or if this isn't the best place to ask.

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  • OpenGL ES 2.0 and glPushMatrix, glPopMatrix

    - by MrDatabase
    Does OpenGL ES 2.0 still support glPushMatrix and glPopMatrix? I'm currently using these in the following way: glPushMatrix(); glTranslatef(xLoc, yLoc, 0); [myTexturePointer drawAtPoint:CGPointZero]; glPopMatrix(); I'm asking because I've read a few things about 2.0 "removing the matrix stack from the spec". Since I'm relatively new to OpenGL I'm not sure where to find a definitive answer.

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  • ASP.NET TABLE + INSIDE A Scrollable DIV, + Table Cell Position:Relative : ModalPopupExtender

    - by Manoj Turumella
    I have a asp.net table inside a scrollable div. I have created a matrix table in which the leftmost table cell acts as a fixed column by using css Position:relative. Now i have a ModalPopupExtender Over that table. When I am trying to open that on the left most cell(the cell which is relative) by clicking on it, the left cell disappears. How can I click the cell keeping it relative? I sincerely appreciate the Help - Manoj

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