How can I draw a log-normalized imshow plot with a colorbar representing the raw data in matplotlib
- by Adam Fraser
I'm using matplotlib to plot log-normalized images but I would like the original raw image data to be represented in the colorbar rather than the [0-1] interval. I get the feeling there's a more matplotlib'y way of doing this by using some sort of normalization object and not transforming the data beforehand... in any case, there could be negative values in the raw image.
import matplotlib.pyplot as plt
import numpy as np
def log_transform(im):
'''returns log(image) scaled to the interval [0,1]'''
try:
(min, max) = (im[im > 0].min(), im.max())
if (max > min) and (max > 0):
return (np.log(im.clip(min, max)) - np.log(min)) / (np.log(max) - np.log(min))
except:
pass
return im
a = np.ones((100,100))
for i in range(100): a[i] = i
f = plt.figure()
ax = f.add_subplot(111)
res = ax.imshow(log_transform(a))
# the colorbar drawn shows [0-1], but I want to see [0-99]
cb = f.colorbar(res)
I've tried using cb.set_array, but that didn't appear to do anything, and cb.set_clim, but that rescales the colors completely.
Thanks in advance for any help :)
