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• Searching in graphs trees with Depth/Breadth first/A* algorithms

  - by devoured elysium

  I have a couple of questions about searching in graphs/trees: Let's assume I have an empty chess board and I want to move a pawn around from point A to B. A. When using depth first search or breadth first search must we use open and closed lists ? This is, a list that has all the elements to check, and other with all other elements that were already checked? Is it even possible to do it without having those lists? What about A*, does it need it? B. When using lists, after having found a solution, how can you get the sequence of states from A to B? I assume when you have items in the open and closed list, instead of just having the (x, y) states, you have an "extended state" formed with (x, y, parent_of_this_node) ? C. State A has 4 possible moves (right, left, up, down). If I do as first move left, should I let it in the next state come back to the original state? This, is, do the "right" move? If not, must I transverse the search tree every time to check which states I've been to? D. When I see a state in the tree where I've already been, should I just ignore it, as I know it's a dead end? I guess to do this I'd have to always keep the list of visited states, right? E. Is there any difference between search trees and graphs? Are they just different ways to look at the same thing?

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• Big-O for calculating all routes from GPS data

  - by HH

  A non-critical GPS module use lists because it needs to be modifiable, new routes added, new distances calculated, continuos comparisons. Well so I thought but my team member wrote something I am very hard to get into. His pseudo code int k =0; a[][] <- create mapModuleNearbyDotList -array //CPU O(n) for(j = 1 to n) // O(nlog(m)) for(i =1 to n) for(k = 1 to n) if(dot is nearby) adj[i][j]=min(adj[i][j], adj[i][k] + adj[k][j]); His ideas transformations of lists to tables His worst case time complexity is O(n^3), where n is number of elements in his so-called table. Exception to the last point with Finite structure: O(mlog(n)) where n is number of vertices and m is the amount of neighbour vertices. Questions about his ideas why to waste resources to transform constantly-modified lists to table? Fast? only point where I to some extent agree but cannot understand the same upper limits n for each for-loops -- perhaps he supposed it circular why does the code take O(mlog(n)) to proceed in time as finite structure? The term finite may be wrong, explicit?

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• What *is* an IPM.DistList?

  - by Jeremy

  I'm trying to get the recipient addresses within an IPM.DistList that is stored in a public folder (of type contacts) in Exchange 2003. The typeName of the object (once I get hold of it) is a Message (with a parent object being a Messages collection) and the messageType is "IPM.DistList". I can find all sorts of things about IPM.DistListItems, which you would think an IPM.DistList would contain, but there apparently isn't any documentation on the DistList (that I can find) and DistListItems documentation lists no parent possibilities in MSDN. I'll state it another way in case I've left you confused: We have an Exchange 2003 info store with Public Folders. Within those Public Folders is a [sub]folder (that holds items of type "Contact") that has a bunch of distribution lists (IPM.DistList's) that have contact entries, members of the list essentially. I need to get the addresses of the members of the lists in the Public Folder sub-folder using any VB language, because the company I work for hired me as a VB guy and expects me to write VB solutions, even though I could do it in C++... alas, I digress. VB is the language I'm supposed to figure this out in. (.net, script, vba, vb6, it doesn't matter which one. Yes, I know vb.net is not really related to those that came before, but they don't know that.) Anyone ran into anything like this? Am I just not finding the IPM.DistList documentation but it does actually exist somewhere? This isn't a Message.MAPIOBJECT (iUnknown) problem is it? Thanks.... Jeremy

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• Why does this Haskell code produce the "infinite type" error?

  - by Charlie Flowers

  I am new to Haskell and facing a "cannot construct infinite type" error that I cannot make sense of. In fact, beyond that, I have not been able to find a good explanation of what this error even means, so if you could go beyond my basic question and explain the "infinite type" error, I'd really appreciate it. Here's the code: intersperse :: a -> [[a]] -> [a] -- intersperse '*' ["foo","bar","baz","quux"] -- should produce the following: -- "foo*bar*baz*quux" -- intersperse -99 [ [1,2,3],[4,5,6],[7,8,9]] -- should produce the following: -- [1,2,3,-99,4,5,6,-99,7,8,9] intersperse _ [] = [] intersperse _ [x] = x intersperse s (x:y:xs) = x:s:y:intersperse s xs And here's the error trying to load it into the interpreter: Prelude :load ./chapter.3.ending.real.world.haskell.exercises.hs [1 of 1] Compiling Main ( chapter.3.ending.real.world.haskell.exercises.hs, interpreted ) chapter.3.ending.real.world.haskell.exercises.hs:147:0: Occurs check: cannot construct the infinite type: a = [a] When generalising the type(s) for `intersperse' Failed, modules loaded: none. Thanks. EDIT: Thanks to the responses, I have corrected the code and I also have a general guideline for dealing with the "infinite type" error in Haskell: Corrected code intersperse _ [] = [] intersperse _ [x] = x intersperse s (x:xs) = x ++ s:intersperse s xs What the problem was: My type signature states that the second parameter to intersperse is a list of lists. Therefore, when I pattern matched against "s (x:y:xs)", x and y became lists. And yet I was treating x and y as elements, not lists. Guideline for dealing with the "infinite type" error: Most of the time, when you get this error, you have forgotten the types of the various variables you're dealing with, and you have attempted to use a variable as if it were some other type than what it is. Look carefully at what type everything is versus how you're using it, and this will usually uncover the problem.

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• Big-O for GPS data

  - by HH

  A non-critical GPS module use lists because it needs to be modifiable, new routes added, new distances calculated, continuos comparisons. Well so I thought but my team member wrote something I am very hard to get into. His pseudo code int k =0; a[][] <- create mapModuleNearbyDotList -array //CPU O(n) for(j = 1 to n) // O(nlog(m)) for(i =1 to n) for(k = 1 to n) if(dot is nearby) adj[i][j]=min(adj[i][j], adj[i][k] + adj[k][j]); His ideas transformations of lists to tables His worst case time complexity is O(n^3), where n is number of elements in his so-called table. Exception to the last point with Finite structure: O(mlog(n)) where n is number of vertices and m is an arbitrary constants Questions about his ideas why to waste resources to transform constantly-modified lists to table? Fast? only point where I to some extent agree but cannot understand the same upper limits n for each for-loops -- perhaps he supposed it circular why does the code take O(mlog(n)) to proceed in time as finite structure? The term finite may be wrong, explicit?

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• Modify passed, nested dict/list

  - by Gerenuk

  I was thinking of writing a function to normalize some data. A simple approach is def normalize(l, aggregate=sum, norm_by=operator.truediv): aggregated=aggregate(l) for i in range(len(l)): l[i]=norm_by(l[i], aggregated) l=[1,2,3,4] normalize(l) l -> [0.1, 0.2, 0.3, 0.4] However for nested lists and dicts where I want to normalize over an inner index this doesnt work. I mean I'd like to get l=[[1,100],[2,100],[3,100],[4,100]] normalize(l, ?? ) l -> [[0.1,100],[0.2,100],[0.3,100],[0.4,100]] Any ideas how I could implement such a normalize function? Maybe it would be crazy cool to write normalize(l[...][0]) Is it possible to make this work?? Or any other ideas? Also not only lists but also dict could be nested. Hmm... EDIT: I just found out that numpy offers such a syntax (for lists however). Anyone know how I would implement the ellipsis trick myself?

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• Avoiding duplicate objects in Java deserialization

  - by YGL

  I have two lists (list1 and list2) containing references to some objects, where some of the list entries may point to the same object. Then, for various reasons, I am serializing these lists to two separate files. Finally, when I deserialize the lists, I would like to ensure that I am not re-creating more objects than needed. In other words, it should still be possible for some entry of List1 to point to the same object as some entry in List2. MyObject obj = new MyObject(); List<MyObject> list1 = new ArrayList<MyObject>(); List<MyObject> list2 = new ArrayList<MyObject>(); list1.add(obj); list2.add(obj); // serialize to file1.ser ObjectOutputStream oos = new ObjectOutputStream(...); oos.writeObject(list1); oos.close(); // serialize to file2.ser oos = new ObjectOutputStream(...); oos.writeObject(list2); oos.close(); I think that sections 3.4 and A.2 of the spec say that deserialization strictly results in the creation of new objects, but I'm not sure. If so, some possible solutions might involve: Implementing equals() and hashCode() and checking references manually. Creating a "container class" to hold everything and then serializing the container class. Is there an easy way to ensure that objects are not duplicated upon deserialization? Thanks.

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• get_bookmarks() object doesn't return link_category

  - by ninja

  I'm trying to fetch all link-categories from the built in Wordpress linklist (or bookmarks if you will). To do this, I simply stored all links in a variable like this: <?php $lists = get_bookmarks(); foreach($lists as $list) { $cats[] = $list->link_category; } ?> To my surprise even var_dump'ing $cats gave me "String(0)", so I var_dump'ed out $lists instead, and it gave me this: array(8) { [0]=> object(stdClass)#5126 (13) { ["link_id"]=> string(1) "1" ["link_url"]=> string(27) "http://codex.wordpress.org/" ["link_name"]=> string(13) "Documentation" ["link_image"]=> string(0) "" ["link_target"]=> string(0) "" ["link_description"]=> string(0) "" ["link_visible"]=> string(1) "Y" ["link_owner"]=> string(1) "1" ["link_rating"]=> string(1) "0" ["link_updated"]=> string(19) "0000-00-00 00:00:00" ["link_rel"]=> string(0) "" ["link_notes"]=> string(0) "" ["link_rss"]=> string(0) "" } Now, codex.wordpress.org is a default link that comes with wordpress, it's in a category called "Linklist", and as you can see, the object contains everything about that link, EXCEPT the categoryname. According to the codex this object should contain a field named "link_category", so I'm getting confused here. Am I missing something? Is the function broke? Regards NINJA

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• LINQ Expression - Dynamic From & Where Clause

  - by chillydk147

  I have the following list of integers that I need to extract varying lists of integers containing numbers from say 2-4 numbers in count. The code below will extract lists with only 2 numbers. var numList = new List<int> { 5, 20, 1, 7, 19, 3, 15, 60, 3, 21, 57, 9 }; var selectedNums = (from n1 in numList from n2 in numList where (n1 > 10) && (n2 > 10) select new { n1, n2 }).ToList(); Is there any way to build up this Linq expression dynamically so that if I wanted lists of 3 numbers it would be compiled as below, this would save me having to package the similar expression inside a different method. var selectedNums = (from n1 in numList from n2 in numList from n3 in numList where (n1 > 10) && (n2 > 10) && (n3 > 10) select new { n1, n2, n3 }).ToList();

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• Manipulating data in sql / asp.net / c# - how?

  - by SLC

  Not sure how to word the question... Basically, so far all my SQL stuff has been stored procedures and dumped into a gridview. The odd case where I had to perform an action based on a value (such as highlighting a row green if a certain value was true) were done as the gridview was rendering in one of the overrides. Now however I have to do something far more complicated - pull three sets of data down, run a series of checks on all three and some date related checks and stuff, then populate a gridview with some of the items. In logic terms, I want to run three queries, and store the lists of results (presumably in Lists?) then run some logic, then populate the gridview. Specifically what I don't know how to do is: Best way of pulling the data, and putting it into a List or other datastructure that lets me easily run through it, and retrieve data based on column (myList.age, or more likely, myList["Age"]). One I have compared the data, I assume I create a new list that will be put into the gridview... how do I put the contents of a list INTO a gridview? How would I add other stuff such as buttons or checkboxes at the same time? Any nudge in the right direction would be appreciated! Particularly doing cool stuff with lists and sql (if there is anything cool you can do with them)

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• find the difference between two very large list

  - by user157195

  I have two large list(could be a hundred million items), the source of each list can be either from a database table or a flat file. both lists are of comparable sizes, both unsorted. I need to find the difference between them. so I have 3 scenarios: 1. List1 is a database table(assume each row simply have one item(key) that is a string), List2 is a large file. 2. Both lists are from 2 db tables. 3. both lists are from two files. in case 2, I plan to use: select a.item from MyTable a where a.item not in (select b.item form MyTable b) this clearly is inefficient, is there a better way? Another approach is: I plan to sort each list, and then walk down both of them to find the diff. If the list is from a file, I have to read it into a db table first, then use db sorting to output the list. Is the run time complexity still O(nlogn) in db sorting? either approach is a pain and seems would be very slow when the list involved has hundreds of millions of items. any suggestions?

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• apt-get fails to upgrade, install, remove etc

  - by Kieran Peat

  I upgraded from 11.10 to 12.04, had no issues that I noticed. Recently tried to install something via software center, but it was throwing errors. Changed to trying to sudo apt-get install instead but again no luck. I've genuinely tried as much as I know to fix this, but I can't so I figured I'd ask here. I've done sudo apt-get update successfully but sudo apt-get upgrade failed with... You might want to run ‘apt-get -f install’ to correct these. The following packages have unmet dependencies. ia32-libs-multiarch:i386 : Depends: libqtcore4:i386 but it is not installed libqt4-dbus:i386 : Depends: libqtcore4:i386 (= 4:4.8.1-0ubuntu4.1) but it is not installed libqt4-declarative:i386 : Depends: libqtcore4:i386 (= 4:4.8.1-0ubuntu4.1) but it is not installed libqt4-designer:i386 : Depends: libqtcore4:i386 (= 4:4.8.1-0ubuntu4.1) but it is not installed libqt4-network:i386 : Depends: libqtcore4:i386 (= 4:4.8.1-0ubuntu4.1) but it is not installed libqt4-opengl:i386 : Depends: libqtcore4:i386 (= 4:4.8.1-0ubuntu4.1) but it is not installed libqt4-qt3support:i386 : Depends: libqtcore4:i386 (= 4:4.8.1-0ubuntu4.1) but it is not installed libqt4-script:i386 : Depends: libqtcore4:i386 (= 4:4.8.1-0ubuntu4.1) but it is not installed libqt4-scripttools:i386 : Depends: libqtcore4:i386 (= 4:4.8.1-0ubuntu4.1) but it is not installed libqt4-sql:i386 : Depends: libqtcore4:i386 (= 4:4.8.1-0ubuntu4.1) but it is not installed libqt4-sql-mysql:i386 : Depends: libqtcore4:i386 (= 4:4.8.1-0ubuntu4.1) but it is not installed libqt4-svg:i386 : Depends: libqtcore4:i386 (= 4:4.8.1-0ubuntu4.1) but it is not installed libqt4-test:i386 : Depends: libqtcore4:i386 (= 4:4.8.1-0ubuntu4.1) but it is not installed libqt4-xml:i386 : Depends: libqtcore4:i386 (= 4:4.8.1-0ubuntu4.1) but it is not installed libqt4-xmlpatterns:i386 : Depends: libqtcore4:i386 (= 4:4.8.1-0ubuntu4.1) but it is not installed libqtgui4:i386 : Depends: libqtcore4:i386 (= 4:4.8.1-0ubuntu4.1) but it is not installed libqtwebkit4:i386 : Depends: libqtcore4:i386 (>= 4:4.8.0~) but it is not installed libssl1.0.0 : Breaks: libssl1.0.0:i386 (!= 1.0.1-4ubuntu5.2) but 1.0.0e-2ubuntu4.6 is installed libssl1.0.0:i386 : Breaks: libssl1.0.0 (!= 1.0.0e-2ubuntu4.6) but 1.0.1-4ubuntu5.2 is installed E: Unmet dependencies. Try using -f. Using sudo apt-get -f install... The following packages were automatically installed and are no longer required: libgtkmm-2.4-1c2a libgtkhtml3.14-19 libglade2-0 Use 'apt-get autoremove' to remove them. The following extra packages will be installed: libqtcore4:i386 libssl1.0.0:i386 The following NEW packages will be installed libqtcore4:i386 The following packages will be upgraded: libssl1.0.0:i386 1 upgraded, 1 newly installed, 0 to remove and 33 not upgraded. 20 not fully installed or removed. Need to get 0 B/3,063 kB of archives. After this operation, 9,044 kB of additional disk space will be used. Do you want to continue [Y/n]? y E: Internal Error, No file name for libssl1.0.0 I've tried sudo apt-get remove libssl1.0.0 and sudo apt-get remove libssl1.0.0:i386 Reading package lists... Done Building dependency tree Reading state information... Done You might want to run 'apt-get -f install' to correct these: The following packages have unmet dependencies. ia32-libs-multiarch:i386 : Depends: libqtcore4:i386 but it is not going to be installed Depends: libssl1.0.0:i386 but it is not going to be installed libcurl3:i386 : Depends: libssl1.0.0:i386 (>= 1.0.0) but it is not going to be installed libqt4-dbus:i386 : Depends: libqtcore4:i386 (= 4:4.8.1-0ubuntu4.1) but it is not going to be installed libqt4-declarative:i386 : Depends: libqtcore4:i386 (= 4:4.8.1-0ubuntu4.1) but it is not going to be installed libqt4-designer:i386 : Depends: libqtcore4:i386 (= 4:4.8.1-0ubuntu4.1) but it is not going to be installed libqt4-network:i386 : Depends: libqtcore4:i386 (= 4:4.8.1-0ubuntu4.1) but it is not going to be installed libqt4-opengl:i386 : Depends: libqtcore4:i386 (= 4:4.8.1-0ubuntu4.1) but it is not going to be installed libqt4-qt3support:i386 : Depends: libqtcore4:i386 (= 4:4.8.1-0ubuntu4.1) but it is not going to be installed libqt4-script:i386 : Depends: libqtcore4:i386 (= 4:4.8.1-0ubuntu4.1) but it is not going to be installed libqt4-scripttools:i386 : Depends: libqtcore4:i386 (= 4:4.8.1-0ubuntu4.1) but it is not going to be installed libqt4-sql:i386 : Depends: libqtcore4:i386 (= 4:4.8.1-0ubuntu4.1) but it is not going to be installed libqt4-sql-mysql:i386 : Depends: libqtcore4:i386 (= 4:4.8.1-0ubuntu4.1) but it is not going to be installed libqt4-svg:i386 : Depends: libqtcore4:i386 (= 4:4.8.1-0ubuntu4.1) but it is not going to be installed libqt4-test:i386 : Depends: libqtcore4:i386 (= 4:4.8.1-0ubuntu4.1) but it is not going to be installed libqt4-xml:i386 : Depends: libqtcore4:i386 (= 4:4.8.1-0ubuntu4.1) but it is not going to be installed libqt4-xmlpatterns:i386 : Depends: libqtcore4:i386 (= 4:4.8.1-0ubuntu4.1) but it is not going to be installed libqtgui4:i386 : Depends: libqtcore4:i386 (= 4:4.8.1-0ubuntu4.1) but it is not going to be installed libqtwebkit4:i386 : Depends: libqtcore4:i386 (>= 4:4.8.0~) but it is not going to be installed libsasl2-modules:i386 : Depends: libssl1.0.0:i386 (>= 1.0.0) but it is not going to be installed E: Unmet dependencies. Try 'apt-get -f install' with no packages (or specify a solution). I've also tried sudo apt-get dist-upgrade, sudo apt-get autoremove etc without any luck. I also tried to download the .deb and use dpkg -i, but that failed and did not fully understand the method to be honest. Edit This is in response to the comments ref: sudo apt-get install -f doesn't fix broken packages. And now? sudo dpkg --configure -a --force-all dpkg: error processing libssl1.0.0 (--configure): libssl1.0.0:amd64 1.0.1-4ubuntu5.2 cannot be configured because libssl1.0.0:i386 is in a different version (1.0.0e-2ubuntu4.6) dpkg: error processing libssl1.0.0:i386 (--configure): libssl1.0.0:i386 1.0.0e-2ubuntu4.6 cannot be configured because libssl1.0.0:amd64 is in a different version (1.0.1-4ubuntu5.2) dpkg: also configuring `libssl1.0.0:i386' (required by `ia32-libs-multiarch:i386') dpkg: error processing libssl1.0.0:i386 (--configure): libssl1.0.0:i386 1.0.0e-2ubuntu4.6 cannot be configured because libssl1.0.0:amd64 is in a different version (1.0.1-4ubuntu5.2) dpkg: also configuring `libssl1.0.0:i386' (required by `ia32-libs-multiarch:i386') dpkg: error processing libssl1.0.0:i386 (--configure): libssl1.0.0:i386 1.0.0e-2ubuntu4.6 cannot be configured because libssl1.0.0:amd64 is in a different version (1.0.1-4ubuntu5.2) dpkg: also configuring `libssl1.0.0:i386' (required by `ia32-libs-multiarch:i386') dpkg: error processing libssl1.0.0:i386 (--configure): libssl1.0.0:i386 1.0.0e-2ubuntu4.6 cannot be configured because libssl1.0.0:amd64 is in a different version (1.0.1-4ubuntu5.2) dpkg: also configuring `libssl1.0.0:i386' (required by `ia32-libs-multiarch:i386') dpkg: error processing libssl1.0.0:i386 (--configure): libssl1.0.0:i386 1.0.0e-2ubuntu4.6 cannot be configured because libssl1.0.0:amd64 is in a different version (1.0.1-4ubuntu5.2) dpkg: also configuring `libssl1.0.0:i386' (required by `ia32-libs-multiarch:i386') dpkg: error processing libssl1.0.0:i386 (--configure): libssl1.0.0:i386 1.0.0e-2ubuntu4.6 cannot be configured because libssl1.0.0:amd64 is in a different version (1.0.1-4ubuntu5.2) dpkg: also configuring `libssl1.0.0:i386' (required by `ia32-libs-multiarch:i386') dpkg: error processing libssl1.0.0:i386 (--configure): libssl1.0.0:i386 1.0.0e-2ubuntu4.6 cannot be configured because libssl1.0.0:amd64 is in a different version (1.0.1-4ubuntu5.2) dpkg: also configuring `libssl1.0.0:i386' (required by `ia32-libs-multiarch:i386') dpkg: error processing libssl1.0.0:i386 (--configure): libssl1.0.0:i386 1.0.0e-2ubuntu4.6 cannot be configured because libssl1.0.0:amd64 is in a different version (1.0.1-4ubuntu5.2) dpkg: also configuring `libssl1.0.0:i386' (required by `ia32-libs-multiarch:i386') dpkg: error processing libssl1.0.0:i386 (--configure): libssl1.0.0:i386 1.0.0e-2ubuntu4.6 cannot be configured because libssl1.0.0:amd64 is in a different version (1.0.1-4ubuntu5.2) dpkg: also configuring `libssl1.0.0:i386' (required by `ia32-libs-multiarch:i386') dpkg: error processing libssl1.0.0:i386 (--configure): libssl1.0.0:i386 1.0.0e-2ubuntu4.6 cannot be configured because libssl1.0.0:amd64 is in a different version (1.0.1-4ubuntu5.2) dpkg: also configuring `libssl1.0.0:i386' (required by `ia32-libs-multiarch:i386') dpkg: error processing libssl1.0.0:i386 (--configure): libssl1.0.0:i386 1.0.0e-2ubuntu4.6 cannot be configured because libssl1.0.0:amd64 is in a different version (1.0.1-4ubuntu5.2) dpkg: also configuring `libssl1.0.0:i386' (required by `ia32-libs-multiarch:i386') dpkg: error processing libssl1.0.0:i386 (--configure): libssl1.0.0:i386 1.0.0e-2ubuntu4.6 cannot be configured because libssl1.0.0:amd64 is in a different version (1.0.1-4ubuntu5.2) dpkg: also configuring `libssl1.0.0:i386' (required by `ia32-libs-multiarch:i386') dpkg: error processing libssl1.0.0:i386 (--configure): libssl1.0.0:i386 1.0.0e-2ubuntu4.6 cannot be configured because libssl1.0.0:amd64 is in a different version (1.0.1-4ubuntu5.2) dpkg: also configuring `libssl1.0.0:i386' (required by `ia32-libs-multiarch:i386') dpkg: error processing libssl1.0.0:i386 (--configure): libssl1.0.0:i386 1.0.0e-2ubuntu4.6 cannot be configured because libssl1.0.0:amd64 is in a different version (1.0.1-4ubuntu5.2) dpkg: also configuring `libssl1.0.0:i386' (required by `ia32-libs-multiarch:i386') dpkg: error processing libssl1.0.0:i386 (--configure): libssl1.0.0:i386 1.0.0e-2ubuntu4.6 cannot be configured because libssl1.0.0:amd64 is in a different version (1.0.1-4ubuntu5.2) dpkg: also configuring `libssl1.0.0:i386' (required by `ia32-libs-multiarch:i386') dpkg: error processing libssl1.0.0:i386 (--configure): libssl1.0.0:i386 1.0.0e-2ubuntu4.6 cannot be configured because libssl1.0.0:amd64 is in a different version (1.0.1-4ubuntu5.2) dpkg: also configuring `libssl1.0.0:i386' (required by `ia32-libs-multiarch:i386') dpkg: error processing libssl1.0.0:i386 (--configure): libssl1.0.0:i386 1.0.0e-2ubuntu4.6 cannot be configured because libssl1.0.0:amd64 is in a different version (1.0.1-4ubuntu5.2) dpkg: also configuring `libssl1.0.0:i386' (required by `ia32-libs-multiarch:i386') dpkg: error processing libssl1.0.0:i386 (--configure): libssl1.0.0:i386 1.0.0e-2ubuntu4.6 cannot be configured because libssl1.0.0:amd64 is in a different version (1.0.1-4ubuntu5.2) dpkg: also configuring `libssl1.0.0:i386' (required by `ia32-libs-multiarch:i386') dpkg: error processing libssl1.0.0:i386 (--configure): libssl1.0.0:i386 1.0.0e-2ubuntu4.6 cannot be configured because libssl1.0.0:amd64 is in a different version (1.0.1-4ubuntu5.2) dpkg: also configuring `libssl1.0.0:i386' (required by `ia32-libs-multiarch:i386') dpkg: error processing libssl1.0.0:i386 (--configure): libssl1.0.0:i386 1.0.0e-2ubuntu4.6 cannot be configured because libssl1.0.0:amd64 is in a different version (1.0.1-4ubuntu5.2) dpkg: also configuring `libssl1.0.0:i386' (required by `ia32-libs-multiarch:i386') dpkg: error processing libssl1.0.0:i386 (--configure): libssl1.0.0:i386 1.0.0e-2ubuntu4.6 cannot be configured because libssl1.0.0:amd64 is in a different version (1.0.1-4ubuntu5.2) dpkg: also configuring `libssl1.0.0:i386' (required by `ia32-libs-multiarch:i386') dpkg: error processing libssl1.0.0:i386 (--configure): libssl1.0.0:i386 1.0.0e-2ubuntu4.6 cannot be configured because libssl1.0.0:amd64 is in a different version (1.0.1-4ubuntu5.2) dpkg: also configuring `libssl1.0.0:i386' (required by `ia32-libs-multiarch:i386') dpkg: error processing libssl1.0.0:i386 (--configure): libssl1.0.0:i386 1.0.0e-2ubuntu4.6 cannot be configured because libssl1.0.0:amd64 is in a different version (1.0.1-4ubuntu5.2) dpkg: also configuring `libssl1.0.0:i386' (required by `ia32-libs-multiarch:i386') dpkg: error processing libssl1.0.0:i386 (--configure): libssl1.0.0:i386 1.0.0e-2ubuntu4.6 cannot be configured because libssl1.0.0:amd64 is in a different version (1.0.1-4ubuntu5.2) dpkg: also configuring `libssl1.0.0:i386' (required by `ia32-libs-multiarch:i386') dpkg: error processing libssl1.0.0:i386 (--configure): libssl1.0.0:i386 1.0.0e-2ubuntu4.6 cannot be configured because libssl1.0.0:amd64 is in a different version (1.0.1-4ubuntu5.2) dpkg: also configuring `libssl1.0.0:i386' (required by `ia32-libs-multiarch:i386') dpkg: error processing libssl1.0.0:i386 (--configure): libssl1.0.0:i386 1.0.0e-2ubuntu4.6 cannot be configured because libssl1.0.0:amd64 is in a different version (1.0.1-4ubuntu5.2) dpkg: also configuring `libssl1.0.0:i386' (required by `ia32-libs-multiarch:i386') dpkg: error processing libssl1.0.0:i386 (--configure): libssl1.0.0:i386 1.0.0e-2ubuntu4.6 cannot be configured because libssl1.0.0:amd64 is in a different version (1.0.1-4ubuntu5.2) dpkg: also configuring `libssl1.0.0:i386' (required by `ia32-libs-multiarch:i386') dpkg: error processing libssl1.0.0:i386 (--configure): libssl1.0.0:i386 1.0.0e-2ubuntu4.6 cannot be configured because libssl1.0.0:amd64 is in a different version (1.0.1-4ubuntu5.2) dpkg: also configuring `libssl1.0.0:i386' (required by `ia32-libs-multiarch:i386') dpkg: error processing libssl1.0.0:i386 (--configure): libssl1.0.0:i386 1.0.0e-2ubuntu4.6 cannot be configured because libssl1.0.0:amd64 is in a different version (1.0.1-4ubuntu5.2) dpkg: also configuring `libssl1.0.0:i386' (required by `ia32-libs-multiarch:i386') dpkg: error processing libssl1.0.0:i386 (--configure): libssl1.0.0:i386 1.0.0e-2ubuntu4.6 cannot be configured because libssl1.0.0:amd64 is in a different version (1.0.1-4ubuntu5.2) dpkg: also configuring `libssl1.0.0:i386' (required by `ia32-libs-multiarch:i386') dpkg: error processing libssl1.0.0:i386 (--configure): libssl1.0.0:i386 1.0.0e-2ubuntu4.6 cannot be configured because libssl1.0.0:amd64 is in a different version (1.0.1-4ubuntu5.2) dpkg: also configuring `libssl1.0.0:i386' (required by `ia32-libs-multiarch:i386') dpkg: error processing libssl1.0.0:i386 (--configure): libssl1.0.0:i386 1.0.0e-2ubuntu4.6 cannot be configured because libssl1.0.0:amd64 is in a different version (1.0.1-4ubuntu5.2) dpkg: also configuring `libssl1.0.0:i386' (required by `ia32-libs-multiarch:i386') dpkg: error processing libssl1.0.0:i386 (--configure): libssl1.0.0:i386 1.0.0e-2ubuntu4.6 cannot be configured because libssl1.0.0:amd64 is in a different version (1.0.1-4ubuntu5.2) dpkg: also configuring `libssl1.0.0:i386' (required by `ia32-libs-multiarch:i386') dpkg: error processing libssl1.0.0:i386 (--configure): libssl1.0.0:i386 1.0.0e-2ubuntu4.6 cannot be configured because libssl1.0.0:amd64 is in a different version (1.0.1-4ubuntu5.2) dpkg: also configuring `libssl1.0.0:i386' (required by `ia32-libs-multiarch:i386') dpkg: error processing libssl1.0.0:i386 (--configure): libssl1.0.0:i386 1.0.0e-2ubuntu4.6 cannot be configured because libssl1.0.0:amd64 is in a different version (1.0.1-4ubuntu5.2) dpkg: also configuring `libssl1.0.0:i386' (required by `ia32-libs-multiarch:i386') dpkg: error processing libssl1.0.0:i386 (--configure): libssl1.0.0:i386 1.0.0e-2ubuntu4.6 cannot be configured because libssl1.0.0:amd64 is in a different version (1.0.1-4ubuntu5.2) dpkg: also configuring `libssl1.0.0:i386' (required by `ia32-libs-multiarch:i386') dpkg: error processing libssl1.0.0:i386 (--configure): libssl1.0.0:i386 1.0.0e-2ubuntu4.6 cannot be configured because libssl1.0.0:amd64 is in a different version (1.0.1-4ubuntu5.2) dpkg: also configuring `libssl1.0.0:i386' (required by `ia32-libs-multiarch:i386') dpkg: error processing libssl1.0.0:i386 (--configure): libssl1.0.0:i386 1.0.0e-2ubuntu4.6 cannot be configured because libssl1.0.0:amd64 is in a different version (1.0.1-4ubuntu5.2) dpkg: also configuring `libssl1.0.0:i386' (required by `ia32-libs-multiarch:i386') dpkg: error processing libssl1.0.0:i386 (--configure): libssl1.0.0:i386 1.0.0e-2ubuntu4.6 cannot be configured because libssl1.0.0:amd64 is in a different version (1.0.1-4ubuntu5.2) dpkg: also configuring `libssl1.0.0:i386' (required by `ia32-libs-multiarch:i386') dpkg: error processing libssl1.0.0:i386 (--configure): libssl1.0.0:i386 1.0.0e-2ubuntu4.6 cannot be configured because libssl1.0.0:amd64 is in a different version (1.0.1-4ubuntu5.2) dpkg: also configuring `libssl1.0.0:i386' (required by `ia32-libs-multiarch:i386') dpkg: error processing libssl1.0.0:i386 (--configure): libssl1.0.0:i386 1.0.0e-2ubuntu4.6 cannot be configured because libssl1.0.0:amd64 is in a different version (1.0.1-4ubuntu5.2) dpkg: also configuring `libssl1.0.0:i386' (required by `ia32-libs-multiarch:i386') dpkg: error processing libssl1.0.0:i386 (--configure): libssl1.0.0:i386 1.0.0e-2ubuntu4.6 cannot be configured because libssl1.0.0:amd64 is in a different version (1.0.1-4ubuntu5.2) dpkg: also configuring `libssl1.0.0:i386' (required by `ia32-libs-multiarch:i386') dpkg: error processing libssl1.0.0:i386 (--configure): libssl1.0.0:i386 1.0.0e-2ubuntu4.6 cannot be configured because libssl1.0.0:amd64 is in a different version (1.0.1-4ubuntu5.2) dpkg: also configuring `libssl1.0.0:i386' (required by `ia32-libs-multiarch:i386') dpkg: error processing libssl1.0.0:i386 (--configure): libssl1.0.0:i386 1.0.0e-2ubuntu4.6 cannot be configured because libssl1.0.0:amd64 is in a different version (1.0.1-4ubuntu5.2) dpkg: also configuring `libssl1.0.0:i386' (required by `ia32-libs-multiarch:i386') dpkg: error processing libssl1.0.0:i386 (--configure): libssl1.0.0:i386 1.0.0e-2ubuntu4.6 cannot be configured because libssl1.0.0:amd64 is in a different version (1.0.1-4ubuntu5.2) dpkg: also configuring `libssl1.0.0:i386' (required by `ia32-libs-multiarch:i386') dpkg: error processing libssl1.0.0:i386 (--configure): libssl1.0.0:i386 1.0.0e-2ubuntu4.6 cannot be configured because libssl1.0.0:amd64 is in a different version (1.0.1-4ubuntu5.2) dpkg: also configuring `libssl1.0.0:i386' (required by `ia32-libs-multiarch:i386') dpkg: error processing libssl1.0.0:i386 (--configure): libssl1.0.0:i386 1.0.0e-2ubuntu4.6 cannot be configured because libssl1.0.0:amd64 is in a different version (1.0.1-4ubuntu5.2) dpkg: also configuring `libssl1.0.0:i386' (required by `ia32-libs-multiarch:i386') dpkg: error processing libssl1.0.0:i386 (--configure): libssl1.0.0:i386 1.0.0e-2ubuntu4.6 cannot be configured because libssl1.0.0:amd64 is in a different version (1.0.1-4ubuntu5.2) dpkg: also configuring `libssl1.0.0:i386' (required by `ia32-libs-multiarch:i386') dpkg: error processing libssl1.0.0:i386 (--configure): libssl1.0.0:i386 1.0.0e-2ubuntu4.6 cannot be configured because libssl1.0.0:amd64 is in a different version (1.0.1-4ubuntu5.2) dpkg: also configuring `libssl1.0.0:i386' (required by `ia32-libs-multiarch:i386') dpkg: error processing libssl1.0.0:i386 (--configure): libssl1.0.0:i386 1.0.0e-2ubuntu4.6 cannot be configured because libssl1.0.0:amd64 is in a different version (1.0.1-4ubuntu5.2) dpkg: too many errors, stopping Errors were encountered while processing: libssl1.0.0 libssl1.0.0:i386 ... libssl1.0.0:i386 Processing was halted because there were too many errors. Ref: Package manager doesn't work anymore moving /var/lib/kpkg/info/libssl.. kieran@kieran-EX58-UD3R:~$ sudo mv /var/lib/dpkg/info/libssl1.0.0:i386.postinst /var/lib/dpkg/info/libssl1.0.0:i386.postinst.bad kieran@kieran-EX58-UD3R:~$ sudo mv /var/lib/dpkg/info/libssl1.0.0:amd64.postinst /var/lib/dpkg/info/libssl1.0.0:amd64.postinst.bad kieran@kieran-EX58-UD3R:~$ sudo apt-get --reinstall install libssl Reading package lists... Done Building dependency tree Reading state information... Done Package libssl is not available, but is referred to by another package. This may mean that the package is missing, has been obsoleted, or is only available from another source E: Package 'libssl' has no installation candidate kieran@kieran-EX58-UD3R:~$ sudo apt-get --reinstall install libssl1.0.0 Reading package lists... Done Building dependency tree Reading state information... Done You might want to run 'apt-get -f install' to correct these: The following packages have unmet dependencies. ia32-libs-multiarch:i386 : Depends: libqtcore4:i386 but it is not going to be installed libqt4-dbus:i386 : Depends: libqtcore4:i386 (= 4:4.8.1-0ubuntu4.1) but it is not going to be installed libqt4-declarative:i386 : Depends: libqtcore4:i386 (= 4:4.8.1-0ubuntu4.1) but it is not going to be installed libqt4-designer:i386 : Depends: libqtcore4:i386 (= 4:4.8.1-0ubuntu4.1) but it is not going to be installed libqt4-network:i386 : Depends: libqtcore4:i386 (= 4:4.8.1-0ubuntu4.1) but it is not going to be installed libqt4-opengl:i386 : Depends: libqtcore4:i386 (= 4:4.8.1-0ubuntu4.1) but it is not going to be installed libqt4-qt3support:i386 : Depends: libqtcore4:i386 (= 4:4.8.1-0ubuntu4.1) but it is not going to be installed libqt4-script:i386 : Depends: libqtcore4:i386 (= 4:4.8.1-0ubuntu4.1) but it is not going to be installed libqt4-scripttools:i386 : Depends: libqtcore4:i386 (= 4:4.8.1-0ubuntu4.1) but it is not going to be installed libqt4-sql:i386 : Depends: libqtcore4:i386 (= 4:4.8.1-0ubuntu4.1) but it is not going to be installed libqt4-sql-mysql:i386 : Depends: libqtcore4:i386 (= 4:4.8.1-0ubuntu4.1) but it is not going to be installed libqt4-svg:i386 : Depends: libqtcore4:i386 (= 4:4.8.1-0ubuntu4.1) but it is not going to be installed libqt4-test:i386 : Depends: libqtcore4:i386 (= 4:4.8.1-0ubuntu4.1) but it is not going to be installed libqt4-xml:i386 : Depends: libqtcore4:i386 (= 4:4.8.1-0ubuntu4.1) but it is not going to be installed libqt4-xmlpatterns:i386 : Depends: libqtcore4:i386 (= 4:4.8.1-0ubuntu4.1) but it is not going to be installed libqtgui4:i386 : Depends: libqtcore4:i386 (= 4:4.8.1-0ubuntu4.1) but it is not going to be installed libqtwebkit4:i386 : Depends: libqtcore4:i386 (>= 4:4.8.0~) but it is not going to be installed libssl1.0.0 : Breaks: libssl1.0.0:i386 (!= 1.0.1-4ubuntu5.2) but 1.0.0e-2ubuntu4.6 is to be installed libssl1.0.0:i386 : Breaks: libssl1.0.0 (!= 1.0.0e-2ubuntu4.6) but 1.0.1-4ubuntu5.2 is to be installed E: Unmet dependencies. Try 'apt-get -f install' with no packages (or specify a solution). kieran@kieran-EX58-UD3R:~$ sudo apt-get -f install Reading package lists... Done Building dependency tree Reading state information... Done Correcting dependencies... Done The following packages were automatically installed and are no longer required: libgtkmm-2.4-1c2a libgtkhtml3.14-19 libglade2-0 Use 'apt-get autoremove' to remove them. The following extra packages will be installed: libqtcore4:i386 libssl1.0.0:i386 The following NEW packages will be installed libqtcore4:i386 The following packages will be upgraded: libssl1.0.0:i386 1 upgraded, 1 newly installed, 0 to remove and 58 not upgraded. 20 not fully installed or removed. Need to get 3,063 kB of archives. After this operation, 9,044 kB of additional disk space will be used. Do you want to continue [Y/n]? y Get:1 http://gb.archive.ubuntu.com/ubuntu/ precise-updates/main libssl1.0.0 i386 1.0.1-4ubuntu5.2 [1,002 kB] Get:2 http://gb.archive.ubuntu.com/ubuntu/ precise-updates/main libqtcore4 i386 4:4.8.1-0ubuntu4.1 [2,061 kB] Fetched 3,063 kB in 4s (731 kB/s) E: Internal Error, No file name for libssl1.0.0 ref: libssl Dependencies removing libssl1.0.0:i386 kieran@kieran-EX58-UD3R:~$ sudo apt-get remove libssl1.0.0:i386 Reading package lists... Done Building dependency tree Reading state information... Done You might want to run 'apt-get -f install' to correct these: The following packages have unmet dependencies. ia32-libs-multiarch:i386 : Depends: libqtcore4:i386 but it is not going to be installed Depends: libssl1.0.0:i386 but it is not going to be installed libcurl3:i386 : Depends: libssl1.0.0:i386 (>= 1.0.0) but it is not going to be installed libqt4-dbus:i386 : Depends: libqtcore4:i386 (= 4:4.8.1-0ubuntu4.1) but it is not going to be installed libqt4-declarative:i386 : Depends: libqtcore4:i386 (= 4:4.8.1-0ubuntu4.1) but it is not going to be installed libqt4-designer:i386 : Depends: libqtcore4:i386 (= 4:4.8.1-0ubuntu4.1) but it is not going to be installed libqt4-network:i386 : Depends: libqtcore4:i386 (= 4:4.8.1-0ubuntu4.1) but it is not going to be installed libqt4-opengl:i386 : Depends: libqtcore4:i386 (= 4:4.8.1-0ubuntu4.1) but it is not going to be installed libqt4-qt3support:i386 : Depends: libqtcore4:i386 (= 4:4.8.1-0ubuntu4.1) but it is not going to be installed libqt4-script:i386 : Depends: libqtcore4:i386 (= 4:4.8.1-0ubuntu4.1) but it is not going to be installed libqt4-scripttools:i386 : Depends: libqtcore4:i386 (= 4:4.8.1-0ubuntu4.1) but it is not going to be installed libqt4-sql:i386 : Depends: libqtcore4:i386 (= 4:4.8.1-0ubuntu4.1) but it is not going to be installed libqt4-sql-mysql:i386 : Depends: libqtcore4:i386 (= 4:4.8.1-0ubuntu4.1) but it is not going to be installed libqt4-svg:i386 : Depends: libqtcore4:i386 (= 4:4.8.1-0ubuntu4.1) but it is not going to be installed libqt4-test:i386 : Depends: libqtcore4:i386 (= 4:4.8.1-0ubuntu4.1) but it is not going to be installed libqt4-xml:i386 : Depends: libqtcore4:i386 (= 4:4.8.1-0ubuntu4.1) but it is not going to be installed libqt4-xmlpatterns:i386 : Depends: libqtcore4:i386 (= 4:4.8.1-0ubuntu4.1) but it is not going to be installed libqtgui4:i386 : Depends: libqtcore4:i386 (= 4:4.8.1-0ubuntu4.1) but it is not going to be installed libqtwebkit4:i386 : Depends: libqtcore4:i386 (>= 4:4.8.0~) but it is not going to be installed libsasl2-modules:i386 : Depends: libssl1.0.0:i386 (>= 1.0.0) but it is not going to be installed E: Unmet dependencies. Try 'apt-get -f install' with no packages (or specify a solution).

  Read the article

• R Package Installation with Oracle R Enterprise

  - by Sherry LaMonica-Oracle

  Normal 0 false false false EN-US X-NONE X-NONE Programming languages give developers the opportunity to write reusable functions and to bundle those functions into logical deployable entities. In R, these are called packages. R has thousands of such packages provided by an almost equally large group of third-party contributors. To allow others to benefit from these packages, users can share packages on the CRAN system for use by the vast R development community worldwide. R's package system along with the CRAN framework provides a process for authoring, documenting and distributing packages to millions of users. In this post, we'll illustrate the various ways in which such R packages can be installed for use with R and together with Oracle R Enterprise. In the following, the same instructions apply when using either open source R or Oracle R Distribution. In this post, we cover the following package installation scenarios for: R command line Linux shell command line Use with Oracle R Enterprise Installation on Exadata or RAC Installing all packages in a CRAN Task View Troubleshooting common errors 1. R Package Installation BasicsR package installation basics are outlined in Chapter 6 of the R Installation and Administration Guide. There are two ways to install packages from the command line: from the R command line and from the shell command line. For this first example on Oracle Linux using Oracle R Distribution, we’ll install the arules package as root so that packages will be installed in the default R system-wide location where all users can access it, /usr/lib64/R/library.Within R, using the install.packages function always attempts to install the latest version of the requested package available on CRAN:R> install.packages("arules")If the arules package depends upon other packages that are not already installed locally, the R installer automatically downloads and installs those required packages. This is a huge benefit that frees users from the task of identifying and resolving those dependencies.You can also install R from the shell command line. This is useful for some packages when an internet connection is not available or for installing packages not uploaded to CRAN. To install packages this way, first locate the package on CRAN and then download the package source to your local machine. For example:$ wget http://cran.r-project.org/src/contrib/arules_1.1-2.tar.gz Then, install the package using the command R CMD INSTALL:$ R CMD INSTALL arules_1.1-2.tar.gzA major difference between installing R packages using the R package installer at the R command line and shell command line is that package dependencies must be resolved manually at the shell command line. Package dependencies are listed in the Depends section of the package’s CRAN site. If dependencies are not identified and installed prior to the package’s installation, you will see an error similar to:ERROR: dependency ‘xxx’ is not available for package ‘yyy’As a best practice and to save time, always refer to the package’s CRAN site to understand the package dependencies prior to attempting an installation. If you don’t run R as root, you won’t have permission to write packages into the default system-wide location and you will be prompted to create a personal library accessible by your userid. You can accept the personal library path chosen by R, or specify the library location by passing parameters to the install.packages function. For example, to create an R package repository in your home directory: R> install.packages("arules", lib="/home/username/Rpackages")or$ R CMD INSTALL arules_1.1-2.tar.gz --library=/home/username/RpackagesRefer to the install.packages help file in R or execute R CMD INSTALL --help at the shell command line for a full list of command line options.To set the library location and avoid having to specify this at every package install, simply create the R startup environment file .Renviron in your home area if it does not already exist, and add the following piece of code to it:R_LIBS_USER = "/home/username/Rpackages" 2. Setting the RepositoryEach time you install an R package from the R command line, you are asked which CRAN mirror, or server, R should use. To set the repository and avoid having to specify this during every package installation, create the R startup command file .Rprofile in your home directory and add the following R code to it:cat("Setting Seattle repository")r = getOption("repos") r["CRAN"] = "http://cran.fhcrc.org/"options(repos = r)rm(r) This code snippet sets the R package repository to the Seattle CRAN mirror at the start of each R session. 3. Installing R Packages for use with Oracle R EnterpriseEmbedded R execution with Oracle R Enterprise allows the use of CRAN or other third-party R packages in user-defined R functions executed on the Oracle Database server. The steps for installing and configuring packages for use with Oracle R Enterprise are the same as for open source R. The database-side R engine just needs to know where to find the R packages.The Oracle R Enterprise installation is performed by user oracle, which typically does not have write permission to the default site-wide library, /usr/lib64/R/library. On Linux and UNIX platforms, the Oracle R Enterprise Server installation provides the ORE script, which is executed from the operating system shell to install R packages and to start R. The ORE script is a wrapper for the default R script, a shell wrapper for the R executable. It can be used to start R, run batch scripts, and build or install R packages. Unlike the default R script, the ORE script installs packages to a location writable by user oracle and accessible by all ORE users - $ORACLE_HOME/R/library.To install a package on the database server so that it can be used by any R user and for use in embedded R execution, an Oracle DBA would typically download the package source from CRAN using wget. If the package depends on any packages that are not in the R distribution in use, download the sources for those packages, also.  For a single Oracle Database instance, replace the R script with ORE to install the packages in the same location as the Oracle R Enterprise packages. $ wget http://cran.r-project.org/src/contrib/arules_1.1-2.tar.gz$ ORE CMD INSTALL arules_1.1-2.tar.gzBehind the scenes, the ORE script performs the equivalent of setting R_LIBS_USER to the value of $ORACLE_HOME/R/library, and all R packages installed with the ORE script are installed to this location. For installing a package on multiple database servers, such as those in an Oracle Real Application Clusters (Oracle RAC) or a multinode Oracle Exadata Database Machine environment, use the ORE script in conjunction with the Exadata Distributed Command Line Interface (DCLI) utility.$ dcli -g nodes -l oracle ORE CMD INSTALL arules_1.1-1.tar.gz The DCLI -g flag designates a file containing a list of nodes to install on, and the -l flag specifies the user id to use when executing the commands. For more information on using DCLI with Oracle R Enterprise, see Chapter 5 in the Oracle R Enterprise Installation Guide.If you are using an Oracle R Enterprise client, install the package the same as any R package, bearing in mind that you must install the same version of the package on both the client and server machines to avoid incompatibilities. 4. CRAN Task ViewsCRAN also maintains a set of Task Views that identify packages associated with a particular task or methodology. Task Views are helpful in guiding users through the huge set of available R packages. They are actively maintained by volunteers who include detailed annotations for routines and packages. If you find one of the task views is a perfect match, you can install every package in that view using the ctv package - an R package for automating package installation. To use the ctv package to install a task view, first, install and load the ctv package.R> install.packages("ctv")R> library(ctv)Then query the names of the available task views and install the view you choose.R> available.views() R> install.views("TimeSeries") 5. Using and Managing R packages To use a package, start up R and load packages one at a time with the library command.Load the arules package in your R session. R> library(arules)Verify the version of arules installed.R> packageVersion("arules")[1] '1.1.2'Verify the version of arules installed on the database server using embedded R execution.R> ore.doEval(function() packageVersion("arules"))View the help file for the apropos function in the arules packageR> ?aproposOver time, your package repository will contain more and more packages, especially if you are using the system-wide repository where others are adding additional packages. It’s good to know the entire set of R packages accessible in your environment. To list all available packages in your local R session, use the installed.packages command:R> myLocalPackages <- row.names(installed.packages())R> myLocalPackagesTo access the list of available packages on the ORE database server from the ORE client, use the following embedded R syntax: R> myServerPackages <- ore.doEval(function() row.names(installed.packages()) R> myServerPackages 6. Troubleshooting Common ProblemsInstalling Older Versions of R packagesIf you immediately upgrade to the latest version of R, you will have no problem installing the most recent versions of R packages. However, if your version of R is older, some of the more recent package releases will not work and install.packages will generate a message such as: Warning message: In install.packages("arules") : package ‘arules’ is not availableThis is when you have to go to the Old sources link on the CRAN page for the arules package and determine which version is compatible with your version of R.Begin by determining what version of R you are using:$ R --versionOracle Distribution of R version 3.0.1 (--) -- "Good Sport" Copyright (C) The R Foundation for Statistical Computing Platform: x86_64-unknown-linux-gnu (64-bit)Given that R-3.0.1 was released May 16, 2013, any version of the arules package released after this date may work. Scanning the arules archive, we might try installing version 0.1.1-1, released in January of 2014:$ wget http://cran.r-project.org/src/contrib/Archive/arules/arules_1.1-1.tar.gz$ R CMD INSTALL arules_1.1-1.tar.gzFor use with ORE:$ ORE CMD INSTALL arules_1.1-1.tar.gzThe "package not available" error can also be thrown if the package you’re trying to install lives elsewhere, either another R package site, or it’s been removed from CRAN. A quick Google search usually leads to more information on the package’s location and status.Oracle R Enterprise is not in the R library pathOn Linux hosts, after installing the ORE server components, starting R, and attempting to load the ORE packages, you may receive the error:R> library(ORE)Error in library(ORE) : there is no package called ‘ORE’If you know the ORE packages have been installed and you receive this error, this is the result of not starting R with the ORE script. To resolve this problem, exit R and restart using the ORE script. After restarting R and ">running the command to load the ORE packages, you should not receive any errors.$ ORER> library(ORE)On Windows servers, the solution is to make the location of the ORE packages visible to R by adding them to the R library paths. To accomplish this, exit R, then add the following lines to the .Rprofile file. On Windows, the .Rprofile file is located in R\etc directory C:\Program Files\R\R-<version>\etc. Add the following lines:.libPaths("<path to $ORACLE_HOME>/R/library")The above line will tell R to include the R directory in the Oracle home as part of its search path. When you start R, the path above will be included, and future R package installations will also be saved to $ORACLE_HOME/R/library. This path should be writable by the user oracle, or the userid for the DBA tasked with installing R packages.Binary package compiled with different version of RBy default, R will install pre-compiled versions of packages if they are found. If the version of R under which the package was compiled does not match your installed version of R you will get an error message:Warning message: package ‘xxx’ was built under R version 3.0.0The solution is to download the package source and build it for your version of R.$ wget http://cran.r-project.org/src/contrib/Archive/arules/arules_1.1-1.tar.gz$ R CMD INSTALL arules_1.1-1.tar.gzFor use with ORE:$ ORE CMD INSTALL arules_1.1-1.tar.gzUnable to execute files in /tmp directoryBy default, R uses the /tmp directory to install packages. On security conscious machines, the /tmp directory is often marked as "noexec" in the /etc/fstab file. This means that no file under /tmp can ever be executed, and users who attempt to install R package will receive an error:ERROR: 'configure' exists but is not executable -- see the 'R Installation and Administration Manual’The solution is to set the TMP and TMPDIR environment variables to a location which R will use as the compilation directory. For example:$ mkdir <some path>/tmp$ export TMPDIR= <some path>/tmp$ export TMP= <some path>/tmpThis error typically appears on Linux client machines and not database servers, as Oracle Database writes to the value of the TMP environment variable for several tasks, including holding temporary files during database installation. 7. Creating your own R packageCreating your own package and submitting to CRAN is for advanced users, but it is not difficult. The procedure to follow, along with details of R's package system, is detailed in the Writing R Extensions manual.

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• How to change the firmware of my NETGEAR WGT624 v2 to DD-WRT

  - by Lirik

  In reference to my previous question: I can't find the appropriate firmware for my NETGEAR WGT624 v2 router. I went on the dd-wrt web site and I read the wiki, but I didn't see any files or instructions on how to change the firmware. The router database lists my router, but as I said: no files. In addition the "Supported" column lists "wip", what is wip? Router Database 4 routers found Manufacturer Model Revision Supported Activation required Netgear WGT624 v1 wip no Netgear WGT624 v2 wip no ... The only thing listed for my router on the dd-wrt web site is: Router details Chipset: AR2312A RAM: 16 MB FLASH: 4 MB Additional information * OpenWRT Wiki: Netgear WGT624 * Unbrick procedure Is the router supported? Can I change the firmware? If yes, then how can I change it?

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• How can I use the Boost Graph Library to lay out verticies?

  - by Mike

  I'm trying to lay out vertices using the Boost Graph Library. However, I'm running into some compilation issues which I'm unsure about. Am I using the BGL in an improper manner? My code is: PositionVec position_vec(2); PositionMap position(position_vec.begin(), get(vertex_index, g)); int iterations = 100; double width = 100.0; double height = 100.0; minstd_rand gen; rectangle_topology<> topology(gen, 0, 0, 100, 100); fruchterman_reingold_force_directed_layout(g, position, topology); //Compile fails on this line The diagnostics produced by clang++(I've also tried GCC) are: In file included from test.cpp:2: /Volumes/Data/mike/Downloads/boost_1_43_0/boost/graph/fruchterman_reingold.hpp:95:3: error: no member named 'dimensions' in 'boost::simple_point<double>' BOOST_STATIC_ASSERT (Point::dimensions == 2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from test.cpp:2: In file included from /Volumes/Data/mike/Downloads/boost_1_43_0/boost/graph/fruchterman_reingold.hpp:13: In file included from /Volumes/Data/mike/Downloads/boost_1_43_0/boost/graph/graph_traits.hpp:15: In file included from /Volumes/Data/mike/Downloads/boost_1_43_0/boost/tuple/tuple.hpp:24: /Volumes/Data/mike/Downloads/boost_1_43_0/boost/static_assert.hpp:118:49: note: instantiated from: sizeof(::boost::STATIC_ASSERTION_FAILURE< BOOST_STATIC_ASSERT_BOOL_CAST( B ) >)>\ ^ In file included from test.cpp:2: /Volumes/Data/mike/Downloads/boost_1_43_0/boost/graph/fruchterman_reingold.hpp:95:3: note: instantiated from: BOOST_STATIC_ASSERT (Point::dimensions == 2); ^ ~~~~~~~ /Volumes/Data/mike/Downloads/boost_1_43_0/boost/graph/fruchterman_reingold.hpp:95:31: note: instantiated from: BOOST_STATIC_ASSERT (Point::dimensions == 2); ~~~~~~~^ /Volumes/Data/mike/Downloads/boost_1_43_0/boost/graph/fruchterman_reingold.hpp:417:19: note: in instantiation of template class 'boost::grid_force_pairs<boost::rectangle_topology<boost::random::linear_congruential<int, 48271, 0, 2147483647, 399268537> >, boost::iterator_property_map<__gnu_cxx::__normal_iterator<boost::simple_point<double> *, std::vector<boost::simple_point<double>, std::allocator<boost::simple_point<double> > > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_name_t, std::basic_string<char>, boost::no_property>, unsigned long>, boost::simple_point<double>, boost::simple_point<double> &> >' requested here make_grid_force_pairs(topology, position, g)), ^ /Volumes/Data/mike/Downloads/boost_1_43_0/boost/graph/fruchterman_reingold.hpp:431:3: note: in instantiation of function template specialization 'boost::fruchterman_reingold_force_directed_layout<boost::rectangle_topology<boost::random::linear_congruential<int, 48271, 0, 2147483647, 399268537> >, boost::adjacency_list<boost::listS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_name_t, std::basic_string<char>, boost::no_property>, boost::no_property, boost::no_property, boost::listS>, boost::iterator_property_map<__gnu_cxx::__normal_iterator<boost::simple_point<double> *, std::vector<boost::simple_point<double>, std::allocator<boost::simple_point<double> > > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_name_t, std::basic_string<char>, boost::no_property>, unsigned long>, boost::simple_point<double>, boost::simple_point<double> &>, boost::square_distance_attractive_force, boost::attractive_force_t, boost::no_property>' requested here fruchterman_reingold_force_directed_layout ^ test.cpp:48:3: note: in instantiation of function template specialization 'boost::fruchterman_reingold_force_directed_layout<boost::rectangle_topology<boost::random::linear_congruential<int, 48271, 0, 2147483647, 399268537> >, boost::adjacency_list<boost::listS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_name_t, std::basic_string<char>, boost::no_property>, boost::no_property, boost::no_property, boost::listS>, boost::iterator_property_map<__gnu_cxx::__normal_iterator<boost::simple_point<double> *, std::vector<boost::simple_point<double>, std::allocator<boost::simple_point<double> > > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_name_t, std::basic_string<char>, boost::no_property>, unsigned long>, boost::simple_point<double>, boost::simple_point<double> &> >' requested here fruchterman_reingold_force_directed_layout(g, position, topology); ^ 1 error generated.

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• Python - calculate multinomial probability density functions on large dataset?

  - by Seafoid

  Hi, I originally intended to use MATLAB to tackle this problem but the inbuilt functions has limitations that do not suit my goal. The same limitation occurs in NumPy. I have two tab-delimited files. The first is a file showing amino acid residue, frequency and count for an in-house database of protein structures, i.e. A 0.25 1 S 0.25 1 T 0.25 1 P 0.25 1 The second file consists of quadruplets of amino acids and the number of times they occur, i.e. ASTP 1 Note, there are 8,000 such quadruplets. Based on the background frequency of occurence of each amino acid and the count of quadruplets, I aim to calculate the multinomial probability density function for each quadruplet and subsequently use it as the expected value in a maximum likelihood calculation. The multinomial distribution is as follows: f(x|n, p) = n!/(x1!*x2!*...*xk!)*((p1^x1)*(p2^x2)*...*(pk^xk)) where x is the number of each of k outcomes in n trials with fixed probabilities p. n is 4 four in all cases in my calculation. I have created three functions to calculate this distribution. # functions for multinomial distribution def expected_quadruplets(x, y): expected = x*y return expected # calculates the probabilities of occurence raised to the number of occurrences def prod_prob(p1, a, p2, b, p3, c, p4, d): prob_prod = (pow(p1, a))*(pow(p2, b))*(pow(p3, c))*(pow(p4, d)) return prob_prod # factorial() and multinomial_coefficient() work in tandem to calculate C, the multinomial coefficient def factorial(n): if n <= 1: return 1 return n*factorial(n-1) def multinomial_coefficient(a, b, c, d): n = 24.0 multi_coeff = (n/(factorial(a) * factorial(b) * factorial(c) * factorial(d))) return multi_coeff The problem is how best to structure the data in order to tackle the calculation most efficiently, in a manner that I can read (you guys write some cryptic code :-)) and that will not create an overflow or runtime error. To data my data is represented as nested lists. amino_acids = [['A', '0.25', '1'], ['S', '0.25', '1'], ['T', '0.25', '1'], ['P', '0.25', '1']] quadruplets = [['ASTP', '1']] I initially intended calling these functions within a nested for loop but this resulted in runtime errors or overfloe errors. I know that I can reset the recursion limit but I would rather do this more elegantly. I had the following: for i in quadruplets: quad = i[0].split(' ') for j in amino_acids: for k in quadruplets: for v in k: if j[0] == v: multinomial_coefficient(int(j[2]), int(j[2]), int(j[2]), int(j[2])) I haven'te really gotten to how to incorporate the other functions yet. I think that my current nested list arrangement is sub optimal. I wish to compare the each letter within the string 'ASTP' with the first component of each sub list in amino_acids. Where a match exists, I wish to pass the appropriate numeric values to the functions using indices. Is their a better way? Can I append the appropriate numbers for each amino acid and quadruplet to a temporary data structure within a loop, pass this to the functions and clear it for the next iteration? Thanks, S :-)

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• Nothing happens when trying to upgrade from Linux Mint 12 to 13

  - by Ares

  I am trying to upgrade from Linux Mint 12 to 13 using apt-get. After running the following commands, nothing seems to happen. I am fairly new to linux, what am I doing wrong? user@olympus /etc/default $ sudo apt-get dist-upgrade Reading package lists... Done Building dependency tree Reading state information... Done Calculating upgrade... Done 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. user@olympus /etc/default $ sudo apt-get upgrade Reading package lists... Done Building dependency tree Reading state information... Done 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.

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• Sorting emails with no To: tags in Outlook

  - by user29589

  Lately people at work have been sending with mailing lists in blind copies instead of just sending to the mailing lists. I think the intent is to prevent people from accidentally replying to all, but it means that these emails aren't sorted into their proper folders when they arrive. I'd like to at least be able to sort them into a common folder, but these emails arrive with no "To:" line in the headers. I'm using Outlook 2007, and I can't figure out a way to use their built-in rule editor to create a rule that sorts these emails. Is there a plugin that will allow me to sort emails like this, or a better rule editor? Updated: I know this is very old, but this is still very annoying to me. Is there any way to sort these kinds of emails to their own folder?

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• Miktex in Ubuntu 9.10 x86-64

  - by Guido

  Hi, do you know how to install the Miktex Distribution in (K)Ubuntu 9.10 x86-64?

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• Rewind print job under Windows Server 2008

  - by FooLman

  Hello, We are in the transition from Novell NetWare to Windows server 2008. In case of the printer server we print jobs thousands of pages long. NetWare printer manager has a handy function which allows to rewind a print job to a specified page. In case of a paper jam at the 750 page on a 800 page document this is really convenient. Does anybody know if there is a solution for this? The lists printed are in plain ascii lists with printer command characters embedded, and we are using dot matrix printers. Thanks for any help or suggestion. Regards.

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• Force Windows 7 to pin a file with no extension to the Jump List for Notepad

  - by Greg Bray

  I want to add the "C:\Windows\System32\drivers\etc\hosts" file to the Jump List for notepad.exe on a Windows 7 machine, but since the file does not have an extension there is no default program associated with it. This means it never shows up in the recent list and you also cannot drag it to the task bar to manually pin it to the start list. I've had problems with jump lists before, and there are ways to use the Registry or File system to change how Jump Lists work, but I haven't seen anything to manually edit a jump list yet. Is there any way to force an item to be pinned to the jump list when that item does not have a program associated with it?

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• Apply SharePoint template to existing site?

  - by johnnyb10

  I have several similar SharePoint sites (running on WSS 3) and I have saved one of the sites as a template. I now want to make a different site (which already exists) have the same structure as this site--the same lists, document libraries, views, etc. I know I can delete the existing site and then recreate it based on this template, but is there a way to apply this template to my existing site, so that it gets rid of its existing lists, etc., and replaces them with the ones from the template? I don't have any content in the site, and I don't want to keep any of the existing structures, so I don't care if anything gets swept away. I may need to do this with a bunch of sites in the future, so being able to apply the template rather than recreating from scratch might be very helpful.

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• To Do list for multiple users using MySQL, Need some advice regarding Projectwork?

  - by Steve

  i am thinking to create a To Do list sort of thing for my Project work. it's sort of a To do list type thing, meant for Multiple Users. i mean each user will have his Login and Password , to access into his account or profile and from there he/she can Manage his own To-Do list. it's has to be Kind of like Remember the Milk sort of. Every user will have his own To Do list. i mean now as Different users will have Different To Dos to perform and so different To Dos Lists, if for data fields like in tabular form. Task || Priority || Deadline || Number of days required ||Status. -----||----------||----------||-------------------------||-------------------- -----||----------||----------||-------------------------||-------------------- -----||----------||----------||-------------------------||-------------------- So what i meant to ask , Can this type of thing be done using MySQL as database and and any web based server side language PHP, ASP, JSP. i mean Can this be done through RDBMS like MySQL, for here different member users will have different to do lists than each others to keep and maintain.

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• How to restore jump list for Windows Explorer pinned taskbar icon?

  - by Dario Solera

  I pinned Windows Explorer's icon to my taskbar months ago, and all worked fine, including jump lists. Note: I changed the default Explorer's folder using the usual trick of changing the GUID in the shortcut. Now, all of a sudden, the jump list is empty, and dropping folders on the pinned icon does not produce any effect, nor recently-opened folders show up in the list (although in the taskbar options I made sure to have it remember recently open items). How can I restore the original functionality, given that all other pinned applications jump lists work correctly? I'm running Windows 7 Ultimate x64, updated with the latest patches. The OS is in US English and my locale is Italian-Italy.

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• Create signed urls for CloudFront with Ruby

  - by wiseleyb

  History: I created a key and pem file on Amazon. I created a private bucket I created a public distribution and used origin id to connect to the private bucket: works I created a private distribution and connected it the same as #3 - now I get access denied: expected I'm having a really hard time generating a url that will work. I've been trying to follow the directions described here: http://docs.amazonwebservices.com/AmazonCloudFront/latest/DeveloperGuide/index.html?PrivateContent.html This is what I've got so far... doesn't work though - still getting access denied: def url_safe(s) s.gsub('+','-').gsub('=','_').gsub('/','~').gsub(/\n/,'').gsub(' ','') end def policy_for_resource(resource, expires = Time.now + 1.hour) %({"Statement":[{"Resource":"#{resource}","Condition":{"DateLessThan":{"AWS:EpochTime":#{expires.to_i}}}}]}) end def signature_for_resource(resource, key_id, private_key_file_name, expires = Time.now + 1.hour) policy = url_safe(policy_for_resource(resource, expires)) key = OpenSSL::PKey::RSA.new(File.readlines(private_key_file_name).join("")) url_safe(Base64.encode64(key.sign(OpenSSL::Digest::SHA1.new, (policy)))) end def expiring_url_for_private_resource(resource, key_id, private_key_file_name, expires = Time.now + 1.hour) sig = signature_for_resource(resource, key_id, private_key_file_name, expires) "#{resource}?Expires=#{expires.to_i}&Signature=#{sig}&Key-Pair-Id=#{key_id}" end resource = "http://d27ss180g8tp83.cloudfront.net/iwantu.jpeg" key_id = "APKAIS6OBYQ253QOURZA" pk_file = "doc/pk-APKAIS6OBYQ253QOURZA.pem" puts expiring_url_for_private_resource(resource, key_id, pk_file) Can anyone tell me what I'm doing wrong here?

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