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  • conversion of DNA to Protein - c structure issue

    - by sam
    I am working on conversion of DNA sequence to Protein sequence. I had completed all program only one error I found there is of structure. dna_codon is a structure and I am iterating over it.In first iteration it shows proper values of structure but from next iteration, it dont show the proper value stored in structure. Its a small error so do not think that I havnt done anything and downvote. I am stucked here because I am new in c for structures. CODE : #include <stdio.h> #include<string.h> void main() { int i, len; char short_codons[20]; char short_slc[1000]; char sequence[1000]; struct codons { char amino_acid[20], slc[20], dna_codon[40]; }; struct codons c1 [20]= { {"Isoleucine", "I", "ATT, ATC, ATA"}, {"Leucine", "L", "CTT, CTC, CTA, CTG, TTA, TTG"}, {"Valine", "V", "GTT, GTC, GTA, GTG"}, {"Phenylalanine", "F", "TTT, TTC"}, {"Methionine", "M", "ATG"}, {"Cysteine", "C", "TGT, TGC"}, {"Alanine", "A", "GCT, GCC, GCA, GCG"}, {"Proline", "P", "CCT, CCC, CCA,CCG "}, {"Threonine", "T", "ACT, ACC, ACA, ACG"}, {"Serine", "S", "TCT, TCC, TCA, TCG, AGT, AGC"}, {"Tyrosine", "Y", "TAT, TAC"}, {"Tryptophan", "W", "TGG"}, {"Glutamine", "Q", "CAA, CAG"}, {"Aspargine","N" "AAT, AAC"}, {"Histidine", "H", "CAT, CAC"}, {"Glutamic acid", "E", "GAA, GAG"}, {"Aspartic acid", "D", "GAT, GAC"}, {"Lysine", "K", "AAA, AAG"}, {"Arginine", "R", "CGT, CGC, CGA, CGG, AGA, AGG"}, {"Stop codons", "Stop", "AA, TAG, TGA"} }; int count = 0; printf("Enter the sequence: "); gets(sequence); char *input_string = sequence; char *tmp_str = input_string; int k; char *pch; while (*input_string != '\0') { char string_3l[4] = {'\0'}; strncpy(string_3l, input_string, 3); printf("\n-----------%s & %s----------", string_3l, tmp_str ); for(k=0;k<20;k++) { //printf("@REAL - %s", c1[0].dna_codon); printf("@ %s", c1[k].dna_codon); int x; x = c1[k].dna_codon; pch = strtok(x, ","); while (pch != NULL) { printf("\n%d : %s with %s", k, string_3l, pch); count=strcmp(string_3l, pch); if(count==0) { strcat(short_slc, c1[k].slc); printf("\n==>%s", short_slc); } pch = strtok (NULL, " ,.-"); } } input_string = input_string+3; } printf("\nProtien sequence is : %s\n", short_slc); } INPUT : TAGTAG OUTPUT : If you see output of printf("\n-----------%s & %s----------", string_3l, tmp_str ); in both iterations, we found that values defined in structure are reduced. I want to know why structure reduces it or its my mistake? because I am stucked here

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  • An IOCP documentation interpretation question - buffer ownership ambiguity

    - by Poni
    Since I'm not a native English speaker I might be missing something so maybe someone here knows better than me. Taken from WSASend's doumentation at MSDN: lpBuffers [in] A pointer to an array of WSABUF structures. Each WSABUF structure contains a pointer to a buffer and the length, in bytes, of the buffer. For a Winsock application, once the WSASend function is called, the system owns these buffers and the application may not access them. This array must remain valid for the duration of the send operation. Ok, can you see the bold text? That's the unclear spot! I can think of two translations for this line (might be something else, you name it): Translation 1 - "buffers" refers to the OVERLAPPED structure that I pass this function when calling it. I may reuse the object again only when getting a completion notification about it. Translation 2 - "buffers" refer to the actual buffers, those with the data I'm sending. If the WSABUF object points to one buffer, then I cannot touch this buffer until the operation is complete. Can anyone tell what's the right interpretation to that line? And..... If the answer is the second one - how would you resolve it? Because to me it implies that for each and every data/buffer I'm sending I must retain a copy of it at the sender side - thus having MANY "pending" buffers (in different sizes) on an high traffic application, which really going to hurt "scalability". Statement 1: In addition to the above paragraph (the "And...."), I thought that IOCP copies the data to-be-sent to it's own buffer and sends from there, unless you set SO_SNDBUF to zero. Statement 2: I use stack-allocated buffers (you know, something like char cBuff[1024]; at the function body - if the translation to the main question is the second option (i.e buffers must stay as they are until the send is complete), then... that really screws things up big-time! Can you think of a way to resolve it? (I know, I asked it in other words above).

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  • SIGSEGV problem

    - by sickmate
    I'm designing a protocol (in C) to implement the layered OSI network structure, using cnet (http://www.csse.uwa.edu.au/cnet/). I'm getting a SIGSEGV error at runtime, however cnet compiles my source code files itself (I can't compile it through gcc) so I can't easily use any debugging tools such as gdb to find the error. Here's the structures used, and the code in question: typedef struct { char *data; } DATA; typedef struct { CnetAddr src_addr; CnetAddr dest_addr; PACKET_TYPE type; DATA data; } Packet; typedef struct { int length; int checksum; Packet datagram; } Frame; static void keyboard(CnetEvent ev, CnetTimerID timer, CnetData data) { char line[80]; int length; length = sizeof(line); CHECK(CNET_read_keyboard((void *)line, (unsigned int *)&length)); // Reads input from keyboard if(length > 1) { /* not just a blank line */ printf("\tsending %d bytes - \"%s\"\n", length, line); application_downto_transport(1, line, &length); } } void application_downto_transport(int link, char *msg, int *length) { transport_downto_network(link, msg, length); } void transport_downto_network(int link, char *msg, int *length) { Packet *p; DATA *d; p = (Packet *)malloc(sizeof(Packet)); d = (DATA *)malloc(sizeof(DATA)); d->data = msg; p->data = *d; network_downto_datalink(link, (void *)p, length); } void network_downto_datalink(int link, Packet *p, int *length) { Frame *f; // Encapsulate datagram and checksum into a Frame. f = (Frame *)malloc(sizeof(Frame)); f->checksum = CNET_crc32((unsigned char *)(p->data).data, *length); // Generate 32-bit CRC for the data. f->datagram = *p; f->length = sizeof(f); //Pass Frame to the CNET physical layer to send Frame to the require link. CHECK(CNET_write_physical(link, (void *)f, (size_t *)f->length)); free(p->data); free(p); free(f); } I managed to find that the line: CHECK(CNET_write_physical(link, (void *)f, (size_t *)f-length)); is causing the segfault but I can't work out why. Any help is greatly appreciated.

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  • Problem with combination boost::exception and boost::variant

    - by Rick
    Hello all, I have strange problem with two-level variant struct when boost::exception is included. I have following code snippet: #include <boost/variant.hpp> #include <boost/exception/all.hpp> typedef boost::variant< int > StoredValue; typedef boost::variant< StoredValue > ExpressionItem; inline std::ostream& operator << ( std::ostream & os, const StoredValue& stvalue ) { return os;} inline std::ostream& operator << ( std::ostream & os, const ExpressionItem& stvalue ) { return os; } When I try to compile it, I have following error: boost/exception/detail/is_output_streamable.hpp(45): error C2593: 'operator <<' is ambiguous test.cpp(11): could be 'std::ostream &operator <<(std::ostream &,const ExpressionItem &)' [found using argument-dependent lookup] test.cpp(8): or 'std::ostream &operator <<(std::ostream &,const StoredValue &)' [found using argument-dependent lookup] 1> while trying to match the argument list '(std::basic_ostream<_Elem,_Traits>, const boost::error_info<Tag,T>)' 1> with 1> [ 1> _Elem=char, 1> _Traits=std::char_traits<char> 1> ] 1> and 1> [ 1> Tag=boost::tag_original_exception_type, 1> T=const type_info * 1> ] Code snippet is simplified as much as possible, in the real code are structures much more complicated and each variant has five sub-types. When i remove #include and try following test snippet, program is compiled correctly: void TestVariant() { ExpressionItem test; std::stringstream str; str << test; } Could someone please advise me how to define operators << in order to function even when using boost::Exception ? Thanks and regards Rick

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  • Recursive N-way merge/diff algorithm for directory trees?

    - by BobMcGee
    What algorithms or Java libraries are available to do N-way, recursive diff/merge of directories? I need to be able to generate a list of folder trees that have many identical files, and have subdirectories with many similar files. I want to be able to use 2-way merge operations to quickly remove as much redundancy as possible. Goals: Find pairs of directories that have many similar files between them. Generate short list of directory pairs that can be synchronized with 2-way merge to eliminate duplicates Should operate recursively (there may be nested duplicates of higher-level directories) Run time and storage should be O(n log n) in numbers of directories and files Should be able to use an embedded DB or page to disk for processing more files than fit in memory (100,000+). Optional: generate an ancestry and change-set between folders Optional: sort the merge operations by how many duplicates they can elliminate I know how to use hashes to find duplicate files in roughly O(n) space, but I'm at a loss for how to go from this to finding partially overlapping sets between folders and their children. EDIT: some clarification The tricky part is the difference between "exact same" contents (otherwise hashing file hashes would work) and "similar" (which will not). Basically, I want to feed this algorithm at a set of directories and have it return a set of 2-way merge operations I can perform in order to reduce duplicates as much as possible with as few conflicts possible. It's effectively constructing an ancestry tree showing which folders are derived from each other. The end goal is to let me incorporate a bunch of different folders into one common tree. For example, I may have a folder holding programming projects, and then copy some of its contents to another computer to work on it. Then I might back up and intermediate version to flash drive. Except I may have 8 or 10 different versions, with slightly different organizational structures or folder names. I need to be able to merge them one step at a time, so I can chose how to incorporate changes at each step of the way. This is actually more or less what I intend to do with my utility (bring together a bunch of scattered backups from different points in time). I figure if I can do it right I may as well release it as a small open source util. I think the same tricks might be useful for comparing XML trees though.

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  • bmp image header doubts

    - by vikramtheone
    Hi Guys, I'm doing a project where I have to make use of the pixel information of a bmp image. So, I'm gathering the image information by reading the header information of the input .bmp image. I'm quite successful with everything but one thing bothers me, can any one here clarify it? The header information of my .bmp image is as follows (My test image is very tiny and gray scale)- BMP File header File size 1210 Offset information 1078 BMP Information header Image Header Size 40 Image Size 132 Image width 9 Image height 11 Image bits_p_p 8 So, from the .bmp header I see that the image size is 132 (bytes) but when I multiply the width and height it is only 99, how is such a thing possible? I'm confident with 132 bytes because when I subtract the Offset value with the File Size value, I get 132(1210 - 1078 = 132) and also when I manually count the number of bytes (In a HEX editor) from the point 1078 or 436h (End of the offset field), there are exactly 132 bytes of pixel information. So, why is there a disparity between the size filed and the (width x height)? My future implementations are dependent on the image width and height information and not on Image size information. So, I have to understand thoroughly whats going on here. My understanding of the header should be clearly wrong... I guess!!! Help!!! Regards Vikram My bmp structures are a as follows - typedef struct bmpfile_magic { short magic; }BMP_MAGIC_NUMBER; typedef struct bmpfile_header { uint32_t filesz; uint16_t creator1; uint16_t creator2; uint32_t bmp_offset; }BMP_FILE_HEADER; typedef struct { uint32_t header_sz; uint32_t width; uint32_t height; uint16_t nplanes; uint16_t bitspp; uint32_t compress_type; uint32_t bmp_bytesz; uint32_t hres; uint32_t vres; uint32_t ncolors; uint32_t nimpcolors; } BMP_INFO_HEADER;

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  • gcc/g++: error when compiling large file

    - by Alexander
    Hi, I have a auto-generated C++ source file, around 40 MB in size. It largely consists of push_back commands for some vectors and string constants that shall be pushed. When I try to compile this file, g++ exits and says that it couldn't reserve enough virtual memory (around 3 GB). Googling this problem, I found that using the command line switches --param ggc-min-expand=0 --param ggc-min-heapsize=4096 may solve the problem. They, however, only seem to work when optimization is turned on. 1) Is this really the solution that I am looking for? 2) Or is there a faster, better (compiling takes ages with these options acitvated) way to do this? Best wishes, Alexander Update: Thanks for all the good ideas. I tried most of them. Using an array instead of several push_back() operations reduced memory usage, but as the file that I was trying to compile was so big, it still crashed, only later. In a way, this behaviour is really interesting, as there is not much to optimize in such a setting -- what does the GCC do behind the scenes that costs so much memory? (I compiled with deactivating all optimizations as well and got the same results) The solution that I switched to now is reading in the original data from a binary object file that I created from the original file using objcopy. This is what I originally did not want to do, because creating the data structures in a higher-level language (in this case Perl) was more convenient than having to do this in C++. However, getting this running under Win32 was more complicated than expected. objcopy seems to generate files in the ELF format, and it seems that some of the problems I had disappeared when I manually set the output format to pe-i386. The symbols in the object file are by standard named after the file name, e.g. converting the file inbuilt_training_data.bin would result in these two symbols: binary_inbuilt_training_data_bin_start and binary_inbuilt_training_data_bin_end. I found some tutorials on the web which claim that these symbols should be declared as extern char _binary_inbuilt_training_data_bin_start;, but this does not seem to be right -- only extern char binary_inbuilt_training_data_bin_start; worked for me.

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  • Serious Memory Clash: Variables clashing in C

    - by Soham
    int main(int argc, char*argv[]) { Message* newMessage; Asset* Check; //manipulation and initialization of Check, so that it holds proper values. newMessage = parser("N,2376,01/02/2011 09:15:01.342,JPASSOCIAT FUTSTK 24FEB2011,B,84.05,2000,0,0",newMessage); // MessageProcess(newMessage,AssetMap); printf("LAST TRADE ADDRESS %p LAST TRADE TIME %s\n",Check->TradeBook,Check->Time); } Message* parser(char *message,Message* new_Message) { char a[9][256]; char* tmp =message; bool inQuote=0; int counter=0; int counter2=0; new_Message = (Message*)malloc(sizeof(Message)); while(*tmp!='\0') { switch(*tmp) { case ',': if(!inQuote) { a[counter][counter2]='\0'; counter++; counter2=0; } break; case '"': inQuote=!inQuote; break; default: a[counter][counter2]=*tmp; counter2++; break; } tmp++; } a[counter][counter2]='\0'; new_Message->type = *a[0]; new_Message->Time = &a[2][11]; new_Message->asset = a[3]; if(*a[4]=='S') new_Message->BS = 0; else new_Message->BS = 1; new_Message->price1=atof(a[5]); new_Message->shares1=atol(a[6]); new_Message->price2=atof(a[7]); new_Message->shares2=atol(a[8]); new_Message->idNum = atoi(a[1]); return(new_Message); } Here there is a serious memory clash, in two variables of different scope. I have investigated using gdb and it seems the address of new_Message->Time is equalling to the address of Check->Time. They both are structures of different types I am trying to resolve this issue, because, when parser changes the value of new_Message->Time it manipulates the contents of Check-Time Please do suggest how to solve this problem. I have lost(spent) around 10 hours and counting to resolve this issue, and tons of hair. Soham

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  • Time required for a process to complete

    - by yelkawar
    I am new to C# world. I am attempting to calculate time taken by a algorithum for the purpose of comparison. Following code measures the elapsed time from when a subroutine is called until the subroutine returns to the main program.This example is taken from "Data structures through C#" by Michael McMillan. After running this program the output is Time=0, which is incorrect. The program appears to be logically correct. Can anybody help me. Following is the code using System.Collections.Generic; using System.Collections; using System.Linq; using System.Text; namespace Chap1 { class Program { static void Main(string[] args) { int num1 = 100; int num2 = 200; Console.WriteLine("num1: " + num1); Console.WriteLine("num2: " + num2); Swap<int>(ref num1, ref num2); Console.WriteLine("num1: " + num1); Console.WriteLine("num2: " + num2); string str1 = "Sam"; string str2 = "Tom"; Console.WriteLine("String 1: " + str1); Console.WriteLine("String 2: " + str2); Swap<string>(ref str1, ref str2); Console.WriteLine("String 1: " + str1); Console.WriteLine("String 2: " + str2); Console.ReadKey(); } static void Swap<T>(ref T val1, ref T val2) { T temp; temp = val1; val1 = val2; val2 = temp; } } class Timing { TimeSpan StartTiming; TimeSpan duration; public Timing() { StartTiming = new TimeSpan(0); duration = new TimeSpan(0); } public TimeSpan startTime() { GC.Collect(); GC.WaitForPendingFinalizers(); StartTiming = Process.GetCurrentProcess().Threads[0].UserProcessorTime; return StartTiming; } public void stopTime() { duration = Process.GetCurrentProcess().Threads[0].UserProcessorTime.Subtract(StartTiming); } public TimeSpan result() { return duration; } } }

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  • Regular expression does not find the first occurrence

    - by scharan
    I have the following input to a perl script and I wish to get the first occurrence of NAME="..." strings in each of the ... structures. The entire file is read into a single string and the reg exp acts on that input. However, the regex always returns the LAST occurrence of NAME="..." strings. Can anyone explain what is going on and how this can be fixed? Input file: ADSDF <TABLE> NAME="ORDERSAA" line1 line2 NAME="ORDERSA" line3 NAME="ORDERSAB" </TABLE> <TABLE> line1 line2 NAME="ORDERSB" line3 </TABLE> <TABLE> line1 line2 NAME="ORDERSC" line3 </TABLE> <TABLE> line1 line2 NAME="ORDERSD" line3 line3 line3 </TABLE> <TABLE> line1 line2 NAME="QUOTES2" line3 NAME="QUOTES3" NAME="QUOTES4" line3 NAME="QUOTES5" line3 </TABLE> <TABLE> line1 line2 NAME="QUOTES6" NAME="QUOTES7" NAME="QUOTES8" NAME="QUOTES9" line3 line3 </TABLE> <TABLE> NAME="MyName IsKhan" </TABLE> Perl Code starts here: use warnings; use strict; my $nameRegExp = '(<table>((NAME="(.+)")|(.*|\n))*</table>)'; sub extractNames($$){ my ($ifh, $ofh) = @_; my $fullFile; read ($ifh, $fullFile, 1024);#Hardcoded to read just 1024 bytes. while( $fullFile =~ m#$nameRegExp#gi){ print "found: ".$4."\n"; } } sub main(){ if( ($#ARGV + 1 )!= 1){ die("Usage: extractNames infile\n"); } my $infileName = $ARGV[0]; my $outfileName = $ARGV[1]; open my $inFile, "<$infileName" or die("Could not open log file $infileName"); my $outFile; #open my $outFile, ">$outfileName" or die("Could not open log file $outfileName"); extractNames( $inFile, $outFile ); close( $inFile ); #close( $outFile ); } #call main();

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  • How do you use technology to memorize set of terms?

    - by user49767
    Always there are few set of items needs to be memorized in short span of time. Here are my following cases. 1) My Job requires some set of items needs to be memorized. 2) I am a developer who has to learn 150+ tags within next 3 days. 3) Fix developer/support has to remember minimum of 125+ tags (set of possible values). 4) It is better if team's SQL developer knows all the table and columns in my database. 5) When guys join new department or job. Memorizing few related items will definitely gives some benefit. Most of the cases, I suggest people to understand the domain better and nothing wrong in using google (but remember correct search-word). But recently I came across a junior developer who took lot of effort in memorizing set of things (150+ table structures, fix protocol tags, almost 300+ configuration items from property file) and was very very successful in his job and was swift in responding for support queries. Needless to say he is smart worker too (not a dumb guy). When I try to recollect some of the successful employees I met, they were so good in remembering entire schema and they did in short span of time. But I don't argue that memorizing alone gives success, but it greatly helps when situation demands. Here my question is, I am not good at remembering things, but it shouldn't be lame excuse. Hence I am evaluating using technolgies better to memorize set of items. Not very much interested in memory techniques (mnemoninc, photography memory, etc..). Even I have recorded 100+ items and listen to that whenever I found free time, defintely there were some fruitful result. Now I need your suggestion about what are all the ways to exploit technology to memorize. There could be so many reason why guys remember a subject (passionate, essential, author, creator, responsbile). Not interested in dissecting why guys remeber. Rather much interested in using ways, and techniques (cheat sheet...) to remember a set of itmes. Note : I appreciate, encourage people who could rephrase my question better. Note : I have kept couple of cheat-sheet close to my monitor, honestly it did not help me :).

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  • Abstract Data Type: Any1 can help me this? thanks..

    - by Aga Hibaya
    Objectives: Implement the Abstract Data Type (ADT) List using dynamically allocated arrays and structures. Description A LIST is an ordered collection of items where items may be inserted anywhere in the list. Implement a LIST using an array as follows: struct list { int *items; // pointer to the array int size; // actual size of the array int count; // number of items in the array }; typedef struct list *List; // pointer to the structure Implement the following functions: a) List newList(int size); - will create a new List and return its pointer. Allocate space for the structure, allocate space for the array, then initialize size and count, return the pointer. b) void isEmpty(List list); c) void display(List list); d) int contains(List list, int item); e) void remove(List list, int i) ; f) void insertAfter(List list,int item, int i); g) void addEnd(List list,int item) - add item at the end of the list – simply store the data at position count, then increment count. If the array is full, allocate an array twice as big as the original. count = 5 size = 10 0 1 2 3 4 5 6 7 8 9 5 10 15 20 30 addEnd(list,40) will result to count = 6 size = 10 0 1 2 3 4 5 6 7 8 9 5 10 15 20 30 40 h) void addFront(List list,int item) - shift all elements to the right so that the item can be placed at position 0, then increment count. Bonus: if the array is full, allocate an array twice as big as the original. count = 5 size = 10 0 1 2 3 4 5 6 7 8 9 5 10 15 20 30 addFront(list,40) will result to count = 6 size = 10 0 1 2 3 4 5 6 7 8 9 40 5 10 15 20 30 i) void removeFront(List list) - shift all elements to the left and decrement count; count = 6 size = 10 0 1 2 3 4 5 6 7 8 9 40 5 10 15 20 30 removeFront(list) will result to count = 5 size = 10 0 1 2 3 4 5 6 7 8 9 5 10 15 20 30 j) void remove(List list,int item) - get the index of the item in the list and then shift all elements to the count = 6 size = 10 0 1 2 3 4 5 6 7 8 9 40 5 10 15 20 30 remove(list,10) will result to count = 5 size = 10 0 1 2 3 4 5 6 7 8 9 40 5 15 20 30 Remarks

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  • C# - calling ext. DLL function containing Delphi "variant record" parameter

    - by CaldonCZE
    Hello, In external (Delphi-created) DLL I've got the following function that I need to call from C# application. function ReadMsg(handle: longword; var Msg: TRxMsg): longword; stdcall; external 'MyDll.dll' name 'ReadMsg'; The "TRxMsg" type is variant record, defined as follows: TRxMsg = record case TypeMsg: byte of 1: (accept, mask: longword); 2: (SN: string[6]); 3: (rx_rate, tx_rate: word); 4: (rx_status, tx_status, ctl0, ctl1, rflg: byte); end; In order to call the function from C#, I declared auxiliary structure "my9Bytes" containing array of bytes and defined that it should be marshalled as 9 bytes long array (which is exactly the size of the Delphi record). private struct my9Bytes { [MarshalAs(UnmanagedType.ByValArray, ArraySubType = UnmanagedType.U1, SizeConst = 9)] public byte[] data; } Then I declared the imported "ReadMsg" function, using the "my9bytes" struct. [DllImport("MyDll.dll")] private static extern uint ReadMsg(uint handle, ref my9Bytes myMsg); I can call the function with no problem... Then I need to create structure corresponding to the original "TRxMsg" variant record and convert my auxiliary "myMsg" array into this structure. I don't know any C# equivalent of Delphi variant array, so I used inheritance and created the following classes. public abstract class TRxMsg { public byte typeMsg; } public class TRxMsgAcceptMask:TRxMsg { public uint accept, mask; //... } public class TRxMsgSN:TRxMsg { public string SN; //... } public class TRxMsgMRate:TRxMsg { public ushort rx_rate, tx_rate; //... } public class TRxMsgStatus:TRxMsg { public byte rx_status, tx_status, ctl0, ctl1, rflg; //... } Finally I create the appropriate object and initialize it with values manually converted from "myMsg" array (I used BitConverter for this). This does work fine, this solution seems to me a little too complicated, and that it should be possible to do this somehow more directly, without the auxiliary "my9bytes" structures or the inheritance and manual converting of individual values. So I'd like to ask you for a suggestions for the best way to do this. Thanks a lot!

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  • Regular expression does not find the first occurance

    - by scharan
    I have the following input to a perl script and I wish to get the first occurrence of NAME="..." strings in each of the ... structures. The entire file is read into a single string and the reg exp acts on that input. However, the regex always returns the LAST occurrence of NAME="..." strings. Can anyone explain what is going on and how this can be fixed? Input file: ADSDF <TABLE> NAME="ORDERSAA" line1 line2 NAME="ORDERSA" line3 NAME="ORDERSAB" </TABLE> <TABLE> line1 line2 NAME="ORDERSB" line3 </TABLE> <TABLE> line1 line2 NAME="ORDERSC" line3 </TABLE> <TABLE> line1 line2 NAME="ORDERSD" line3 line3 line3 </TABLE> <TABLE> line1 line2 NAME="QUOTES2" line3 NAME="QUOTES3" NAME="QUOTES4" line3 NAME="QUOTES5" line3 </TABLE> <TABLE> line1 line2 NAME="QUOTES6" NAME="QUOTES7" NAME="QUOTES8" NAME="QUOTES9" line3 line3 </TABLE> <TABLE> NAME="MyName IsKhan" </TABLE> Perl Code starts here: use warnings; use strict; my $nameRegExp = '(<table>((NAME="(.+)")|(.*|\n))*</table>)'; sub extractNames($$){ my ($ifh, $ofh) = @_; my $fullFile; read ($ifh, $fullFile, 1024);#Hardcoded to read just 1024 bytes. while( $fullFile =~ m#$nameRegExp#gi){ print "found: ".$4."\n"; } } sub main(){ if( ($#ARGV + 1 )!= 1){ die("Usage: extractNames infile\n"); } my $infileName = $ARGV[0]; my $outfileName = $ARGV[1]; open my $inFile, "<$infileName" or die("Could not open log file $infileName"); my $outFile; #open my $outFile, ">$outfileName" or die("Could not open log file $outfileName"); extractNames( $inFile, $outFile ); close( $inFile ); #close( $outFile ); } #call main();

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  • Bound DataGridView not updating data source

    - by Max Yaffe
    I'm trying to bind a table of structures to a DataGridView. Loading and viewing the table is working fine but I can't edit a value and get it stored back into the table. Here's what I'm doing. I have a "primitive" data type, Real defined by public struct MyReal:IMyPrimative { public Double m_Real; //... public MyReal(String val) { m_Real = default(Double); Init(val); } //... } It gets used in a structure: public struct MyReal_Record : IMyRecord { public MyReal Freq { get; set;} MyReal_Record(String[] vals) { Init(vals); } } And the structure is used to define a table using a generic Binding List public class MyTable<S> : BindingList<S> where S: struct, IMyRecord { public Type typeofS; public MyTable() { typeofS = typeof(S); // ... } This table is used as a binding source for a grid, dynamically. private void miLoadFile_Click(object sender, EventArgs e) { MyModel.Table<Real_Record> RTable = new MyModel.Table<Real_Record>(); //... Table initialized here //set up grid with virtual mode dataGridView1.DataSource = RTable; } All of this works fine and I can create RTable, initialize it and display it in a grid. The grid allows editing and has events set for CellParsing and CellFormatting which look like: private void dataGridView1_CellFormatting(object sender, DataGridViewCellFormattingEventArgs e) { if (e.DesiredType != typeof(String)) return; e.Value = e.Value.ToString(); } private void dataGridView1_CellParsing(object sender, DataGridViewCellParsingEventArgs e) { if (e.DesiredType != typeof(MyReal)) return; e.Value = new MyReal(e.Value.ToString()); e.ParsingApplied = true; this.dataGridView1.UpdateCellValue(e.ColumnIndex, e.RowIndex); } When I edit a value in a cell, I can change the text. On leaving the cell, CellParsing fires and the event handler is called. Everything seems to be correct going into the CellParsing handler. e.DesiredType is MyReal. e.Value is a string with the new value. After the new MyReal is created from the string, e.Value is set correctly. RowIndex and ColumnIndex are correct. ReadOnly is set false. However, when I leave the cell, the system restores the original value to the cell. I thought the UpdateCellValue would replace the value in the dataSource but I seem to be missing something. What did I miss? Thanks, Max

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  • USB windows xp final USB access issues

    - by Lex Dean
    I basically understand you C++ people, Please do not get distracted because I'm writing in Delphi. I have a stable USB Listing method that accesses all my USB devices I get the devicepath, and this structure: TSPDevInfoData = packed record Size: DWORD; ClassGuid: TGUID; DevInst: DWORD; // DEVINST handle Reserved: DWord; end; I get my ProductID and VenderID successfully from my DevicePath Lists all USB devices connected to the computer at the time That enables me to access the registry data to each device in a stable way. What I'm lacking is a little direction Is friendly name able to be written inside the connected USB Micro chips by the firmware programmer? (I'm thinking of this to identify the device even further, or is this to help identify Bulk data transfer devices like memory sticks and camera's) Can I use SPDRP_REMOVAL_POLICY_OVERRIDE to some how reset these polices What else can I do with the registry details. Identifying when some one unplugs a device The program is using (in windows XP standard) I used a documented windows event that did not respond. Can I read a registry value to identify if its still connected? using CreateFileA (DevicePath) to send and receive data I have read when some one unplugs in the middle of a data transfer its difficult clearing resources. what can IoCreateDevice do for me and how does one use it for that task This two way point of connection status and system lock up situations is very concerning. Has some one read anything about this subject recently? My objectives are to 1. list connected USB devices identify a in development Micro Controller from everything else send and receive data in a stable and fast way to the limits of the controller No lock up's transferring data Note I'm not using any service packs I understand everything USB is in ANSI when windows xp is not and .Net is all about ANSI (what a waste of memory) I plan to continue this project into a .net at a later date as an addition. MSDN gives me Structures and Functions and what should link to what ok but say little to what they get used for. What is available in my language Delphi is way over priced that it needs a major price drop.

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  • how can we make class with Linked list recursion ...

    - by epsilon_G
    Hi , I'm newbee in The C++ heaven and the OOP, ... I'd like to make some stuffs with the Data structures ... However,I'd like to merge two linked listes ... I made a class before "List" wich contain all what I need to programme something with List ... Add , Display .. The probleme is that I programmed the function "Merge2lists" which give us the third list .. How can I display the third list in the main program after using "Merge2lists" Plz , my prob with the Class and the OOP syntaxe ... try to give me the implementation in the main program ??? Otherwise,How can I apply function given pointer in main program wich declared in class .. Thankx class Liste { private: struct node { int elem ; node *next; }*p; public: LLC(); void Merge2lists (node* a, node * b,node *&result); ~LLC(); }; void List::Merge2lists (node* a, node * b,node *&result) { result = NULL; if (a==NULL) { result=b; return;} else if (b==NULL) { result=a; return;} if (a->elem <= b->elem) { result = a; Merge2lists(a->next, b,result->next); } else { result = b; Merge2lists(a, b->next,result->next); } return; } int main() { liste a ; a.Aff_Val(46); a.Aff_Val(54); a.add_as_first(2); a.add_as_first(1); a.Display(); /*This to displat the elemnts ... Don't care about it it's easy to make*/ list liste2; b.Add(2); b.Add(14); b.Add(16); list result; Merge2lists (a,b,result); /*The probleme is here , how can I use this in my program */

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  • Getting RGB values for each pixel from a 24bpp Bitmap in C

    - by seven
    Hello, i want to read the RGB values for each pixel from a .bmp file , so i can convert the bmp into a format suitable for gba . so i need to get just the RGB for each pixel and then write this information to a file. i am trying to use the windows.h structures : typedef struct { char signature[2]; unsigned int fileSize; unsigned int reserved; unsigned int offset; }BmpHeader; typedef struct { unsigned int headerSize; unsigned int width; unsigned int height; unsigned short planeCount; unsigned short bitDepth; unsigned int compression; unsigned int compressedImageSize; unsigned int horizontalResolution; unsigned int verticalResolution; unsigned int numColors; unsigned int importantColors; }BmpImageInfo; typedef struct { unsigned char blue; unsigned char green; unsigned char red; unsigned char reserved; }Rgb; typedef struct { BmpHeader header; BmpImageInfo info; Rgb colors[256]; unsigned short image[1]; }BmpFile; but i only need RGB struct. So lets say i read "in.bmp": FILE *inFile, *outFile; inFile = fopen("C://in.bmp", "rb"); Rgb Palette[256]; for(i=0;i<256;i++) { fread(&Palette[i],sizeof(Rgb),1,inFile); } fclose(inFile); is this correct ? how do i write only the RGB information to a file ? can anyone please give me some information please . Thank you.

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  • Why does my Perl regular expression only find the last occurrence?

    - by scharan
    I have the following input to a Perl script and I wish to get the first occurrence of NAME="..." strings in each of the <table>...</table> structures. The entire file is read into a single string and the regex acts on that input. However, the regex always returns the last occurrence of NAME="..." strings. Can anyone explain what is going on and how this can be fixed? Input file: ADSDF <TABLE> NAME="ORDERSAA" line1 line2 NAME="ORDERSA" line3 NAME="ORDERSAB" </TABLE> <TABLE> line1 line2 NAME="ORDERSB" line3 </TABLE> <TABLE> line1 line2 NAME="ORDERSC" line3 </TABLE> <TABLE> line1 line2 NAME="ORDERSD" line3 line3 line3 </TABLE> <TABLE> line1 line2 NAME="QUOTES2" line3 NAME="QUOTES3" NAME="QUOTES4" line3 NAME="QUOTES5" line3 </TABLE> <TABLE> line1 line2 NAME="QUOTES6" NAME="QUOTES7" NAME="QUOTES8" NAME="QUOTES9" line3 line3 </TABLE> <TABLE> NAME="MyName IsKhan" </TABLE> Perl Code starts here: use warnings; use strict; my $nameRegExp = '(<table>((NAME="(.+)")|(.*|\n))*</table>)'; sub extractNames($$){ my ($ifh, $ofh) = @_; my $fullFile; read ($ifh, $fullFile, 1024);#Hardcoded to read just 1024 bytes. while( $fullFile =~ m#$nameRegExp#gi){ print "found: ".$4."\n"; } } sub main(){ if( ($#ARGV + 1 )!= 1){ die("Usage: extractNames infile\n"); } my $infileName = $ARGV[0]; my $outfileName = $ARGV[1]; open my $inFile, "<$infileName" or die("Could not open log file $infileName"); my $outFile; #open my $outFile, ">$outfileName" or die("Could not open log file $outfileName"); extractNames( $inFile, $outFile ); close( $inFile ); #close( $outFile ); } #call main();

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  • SQL/Schema comparison and upgrade

    - by Workshop Alex
    I have a simple situation. A large organisation is using several different versions of some (desktop) application and each version has it's own database structure. There are about 200 offices and each office will have it's own version, which can be one of 7 different ones. The company wants to upgrade all applications to the latest versions, which will be version 8. The problem is that they don't have a separate database for each version. Nor do they have a separate database for each office. They have one single database which is handled by a dedicated server, thus keeping things like management and backups easier. Every office has it's own database schema and within the schema there's the whole database structure for their specific application version. As a result, I'm dealing with 200 different schema's which need to be upgraded, each with 7 possible versions. Fortunately, every schema knows the proper version so checking the version isn't difficult. But my problem is that I need to create upgrade scripts which can upgrade from version 1 to version 2 to version 3 to etc... Basically, all schema's need to be bumped up one version until they're all version 8. Writing the code that will do this is no problem. the challenge is how to create the upgrade script from one version to the other? Preferably with some automated tool. I've examined RedGate's SQL Compare and Altova's DatabaseSpy but they're not practical. Altova is way too slow. RedGate requires too much processing afterwards, since the generated SQL Script still has a few errors and it refers to the schema name. Furthermore, the code needs to become part of a stored procedure and the code generated by RedGate doesn't really fit inside a single procedure. (Plus, it's doing too much transaction-handling, while I need everything within a single transaction. I have been considering using another SQL Comparison tool but it seems to me that my case is just too different from what standard tools can deliver. So I'm going to write my own comparison tool. To do this, I'll be using ADOX with Delphi to read the catalogues for every schema version in the database, then use this to write the SQL Statements that will need to upgrade these schema's to their next version. (Comparing 1 with 2, 2 with 3, 3 with 4, etc.) I'm not unfamiliar with generating SQL-Script-Generators so I don't expect too many problems. And I'll only be upgrading the table structures, not any of the other database objects. So, does anyone have some good tips and tricks to apply when doing this kind of comparisons? Things to be aware of? Practical tips to increase speed?

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  • Setting up Netbeans/Eclipse for Linux Kernel Development

    - by red.october
    Hi: I'm doing some Linux kernel development, and I'm trying to use Netbeans. Despite declared support for Make-based C projects, I cannot create a fully functional Netbeans project. This is despite compiling having Netbeans analyze a kernel binary that was compiled with full debugging information. Problems include: files are wrongly excluded: Some files are incorrectly greyed out in the project, which means Netbeans does not believe they should be included in the project, when in fact they are compiled into the kernel. The main problem is that Netbeans will miss any definitions that exist in these files, such as data structures and functions, but also miss macro definitions. cannot find definitions: Pretty self-explanatory - often times, Netbeans cannot find the definition of something. This is partly a result of the above problem. can't find header files: self-explanatory I'm wondering if anyone has had success with setting up Netbeans for Linux kernel development, and if so, what settings they used. Ultimately, I'm looking for Netbeans to be able to either parse the Makefile (preferred) or extract the debug information from the binary (less desirable, since this can significantly slow down compilation), and automatically determine which files are actually compiled and which macros are actually defined. Then, based on this, I would like to be able to find the definitions of any data structure, variable, function, etc. and have complete auto-completion. Let me preface this question with some points: I'm not interested in solutions involving Vim/Emacs. I know some people like them, but I'm not one of them. As the title suggest, I would be also happy to know how to set-up Eclipse to do what I need While I would prefer perfect coverage, something that only misses one in a million definitions is obviously fine SO's useful "Related Questions" feature has informed me that the following question is related: http://stackoverflow.com/questions/149321/what-ide-would-be-good-for-linux-kernel-driver-development. Upon reading it, the question is more of a comparison between IDE's, whereas I'm looking for how to set-up a particular IDE. Even so, the user Wade Mealing seems to have some expertise in working with Eclipse on this kind of development, so I would certainly appreciate his (and of course all of your) answers. Cheers

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  • Can this way of storing typed objects be improved?

    - by Pindatjuh
    This is an "can it be improved"-question. Topic: Storing typed objects in memory. Background information: I'm building a compiler for the x86-32 Windows platform for my language. My goal includes typed objects. Idea: Every primitive is a semi-class (it can be used as if it was a normal class, but it's stored more compact). Every class is represented by primitives and some meta-data (containing class-properties, inheritance stuff, etc.). The meta-data is complex: it doesn't use fields but instead context-switches. For primitives, the meta-data is very small, compared to a "real" class, which is alot bigger. This enables another idea that "primitives are objects", in my language, which I found nessecairy. Example: If I have an array of 32 booleans, then the pure content of this array is exactly 4 byte (32 bits of booleans). The meta-data will contain flags that the type is an array of booleans, which contains 32 entries. The meta-data is very compacted, on bit-level: using a sort of "packing" mechanism, which is read by a FSM at runtime, when doing inspection of the type (like when passing the object to methods for checking, etc.) For instance (read from left to right, top to bottom, remember vertical position when going to the right, and check nearest column header for meaning of switch): Primitive? Array? Type-Meta 1 Byte? || Size (1 byte) 1 1 [...] 1 [...] done 0 2 Bytes? || Size (2 bytes) 1 [...] done || Size (4 bytes) 0 [...] done Integer? 1 Byte? 2 Bytes? 0 1 0 1 done 1 done 0 done Boolean? Byte? 0 1 0 done 1 done More-Primitives 0 .... Class-Stuff (Huge) 0 ... (After reaching done the data is inserted. || = byte alignment. [...] is variable sized. ... is not described here, for simplicity. And let's call them cost-based-data-structures.) For an array of 32 booleans containing all true values, the memory for this type would be (read top-down): 1 Primitive 1 Array 1 ArrayType: Primitive 0 Not-Array 0 Not-Integer 1 Boolean 0 Not-Byte (thus bit) 1 Integer Size: 1 Byte 00100000 Array size 01010101 01010101 01010101 01010101 Data (user defined) Thus, 8 bytes represent 32 booleans in an array: 11100101 00100000 01010101 01010101 01010101 01010101 How can I improve this? (Both performance- and memory-consumption wise)

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  • JNI cached jclass global reference variables being garbage collected?

    - by bubbadoughball
    I'm working in the JNI Invocation API, calling into Java from C. I have some upfront initialization to cache 30+ Java classes into global references. The results of FindClass are passed into NewGlobalRef to acquire a global reference to the class. I'm caching these class variables to reuse them later. I have 30+ global references to classes (and 30+ global methodIDs for the class constructors). In the following sample, I've removed exception handling as well as JNI invocation for the purpose of shortening the code snippet. My working code has exception checks after every JNI call and I'm running with -Xcheck:jni. Here's the snippet: jclass aClass; jclass bClass; jmethodID aCtor; jmethodID bCtor; void getGlobalRef(const char* clazz, jclass* globalClass) { jclass local = (*jenv)->FindClass(jenv,clazz); if (local) { *globalClass = (jclass) (*jenv)->NewGlobalRef(jenv,local); (*jenv)->DeleteLocalRef(jenv,local); } } methodID getMethodID(jclass clazz, const char* method, const char* sig) { return (*jenv)->GetMethodID(jenv,clazz,method,sig); } void initializeJNI() { getGlobalRef("MyProj/Testclass1", &aclass); getGlobalRef("MyProj/Testclass2", &bclass); . . aCtor = getMethodID(aclass,"<init>","()V"); bCtor = getMethodID(bclass,"<init>","(I)V"); } The initializeJNI() function sets the global references for jclasses and method IDs for constructors as well as some jfieldID's and some initialization of C data structures. After initialization, when I call into a JNI function using some of the cached jclasses and ctor jmethodIDs, I get a bad global or local reference calling reported from the -Xcheck:jni. In gdb, I break at the last line of initializeJNI(), and print all jclasses and jmethodIDs and the ones causing problems look to have been turned into garbage or garbage-collected (i.e. 0x00 or 0x06). Is it possible for global references to be gc'ed? Any suggestions?

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  • Multi-threaded Pooled Allocators

    - by Darren Engwirda
    I'm having some issues using pooled memory allocators for std::list objects in a multi-threaded application. The part of the code I'm concerned with runs each thread function in isolation (i.e. there is no communication or synchronization between threads) and therefore I'd like to setup separate memory pools for each thread, where each pool is not thread-safe (and hence fast). I've tried using a shared thread-safe singleton memory pool and found the performance to be poor, as expected. This is a heavily simplified version of the type of thing I'm trying to do. A lot has been included in a pseudo-code kind of way, sorry if it's confusing. /* The thread functor - one instance of MAKE_QUADTREE created for each thread */ class make_quadtree { private: /* A non-thread-safe memory pool for int linked list items, let's say that it's * something along the lines of BOOST::OBJECT_POOL */ pooled_allocator<int> item_pool; /* The problem! - a local class that would be constructed within each std::list as the * allocator but really just delegates to ITEM_POOL */ class local_alloc { public : //!! I understand that I can't access ITEM_POOL from within a nested class like //!! this, that's really my question - can I get something along these lines to //!! work?? pointer allocate (size_t n) { return ( item_pool.allocate(n) ); } }; public : make_quadtree (): item_pool() // only construct 1 instance of ITEM_POOL per // MAKE_QUADTREE object { /* The kind of data structures - vectors of linked lists * The idea is that all of the linked lists should share a local pooled allocator */ std::vector<std::list<int, local_alloc>> lists; /* The actual operations - too complicated to show, but in general: * * - The vector LISTS is grown as a quadtree is built, it's size is the number of * quadtree "boxes" * * - Each element of LISTS (each linked list) represents the ID's of items * contained within each quadtree box (say they're xy points), as the quadtree * is grown a lot of ID pop/push-ing between lists occurs, hence the memory pool * is important for performance */ } }; So really my problem is that I'd like to have one memory pool instance per thread functor instance, but within each thread functor share the pool between multiple std::list objects.

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  • What's the C strategy to "imitate" a C++ template ?

    - by Andrei Ciobanu
    After reading some examples on stackoverflow, and following some of the answers for my previous questions (1), I've eventually come with a "strategy" for this. I've come to this: 1) Have a declare section in the .h file. Here I will define the data-structure, and the accesing interface. Eg.: /** * LIST DECLARATION. (DOUBLE LINKED LIST) */ #define NM_TEMPLATE_DECLARE_LIST(type) \ typedef struct nm_list_elem_##type##_s { \ type data; \ struct nm_list_elem_##type##_s *next; \ struct nm_list_elem_##type##_s *prev; \ } nm_list_elem_##type ; \ typedef struct nm_list_##type##_s { \ unsigned int size; \ nm_list_elem_##type *head; \ nm_list_elem_##type *tail; \ int (*cmp)(const type e1, const type e2); \ } nm_list_##type ; \ \ nm_list_##type *nm_list_new_##type##_(int (*cmp)(const type e1, \ const type e2)); \ \ (...other functions ...) 2) Wrap the functions in the interface inside MACROS: /** * LIST INTERFACE */ #define nm_list(type) \ nm_list_##type #define nm_list_elem(type) \ nm_list_elem_##type #define nm_list_new(type,cmp) \ nm_list_new_##type##_(cmp) #define nm_list_delete(type, list, dst) \ nm_list_delete_##type##_(list, dst) #define nm_list_ins_next(type,list, elem, data) \ nm_list_ins_next_##type##_(list, elem, data) (...others...) 3) Implement the functions: /** * LIST FUNCTION DEFINITIONS */ #define NM_TEMPLATE_DEFINE_LIST(type) \ nm_list_##type *nm_list_new_##type##_(int (*cmp)(const type e1, \ const type e2)) \ {\ nm_list_##type *list = NULL; \ list = nm_alloc(sizeof(*list)); \ list->size = 0; \ list->head = NULL; \ list->tail = NULL; \ list->cmp = cmp; \ }\ void nm_list_delete_##type##_(nm_list_##type *list, \ void (*destructor)(nm_list_elem_##type elem)) \ { \ type data; \ while(nm_list_size(list)){ \ data = nm_list_rem_##type(list, tail); \ if(destructor){ \ destructor(data); \ } \ } \ nm_free(list); \ } \ (...others...) In order to use those constructs, I have to create two files (let's call them templates.c and templates.h) . In templates.h I will have to NM_TEMPLATE_DECLARE_LIST(int), NM_TEMPLATE_DECLARE_LIST(double) , while in templates.c I will need to NM_TEMPLATE_DEFINE_LIST(int) , NM_TEMPLATE_DEFINE_LIST(double) , in order to have the code behind a list of ints, doubles and so on, generated. By following this strategy I will have to keep all my "template" declarations in two files, and in the same time, I will need to include templates.h whenever I need the data structures. It's a very "centralized" solution. Do you know other strategy in order to "imitate" (at some point) templates in C++ ? Do you know a way to improve this strategy, in order to keep things in more decentralized manner, so that I won't need the two files: templates.c and templates.h ?

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