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• Fish Interactive Shell full path

  - by Milhous

  Is there a way in the Fish Interactive shell for the full path to be displayed. Currently when I navigate to a directory I get the following shell. millermj@Dodore ~/o/workspace but I would rather see millermj@Dodore ~/o-town/workspace

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• Convert Chunk of Data into Tabular Format Using Perl

  - by neversaint

  I have a data that looks like this 1:SRX000566 Submitter: WoldLab Study: RNASeq expression profiling for ENCODE project(SRP000228) Sample: Human cell line GM12878(SRS000567) Instrument: Solexa 1G Genome Analyzer Total: 4 runs, 62.7M spots, 2.1G bases Run #1: SRR002055, 11373440 spots, 375323520 bases Run #2: SRR002063, 22995209 spots, 758841897 bases Run #3: SRR005091, 13934766 spots, 459847278 bases Run #4: SRR005096, 14370900 spots, 474239700 bases 2:SRX000565 Submitter: WoldLab Study: RNASeq expression profiling for ENCODE project(SRP000228) Sample: Human cell line GM12878(SRS000567) Instrument: Solexa 1G Genome Analyzer Total: 3 runs, 51.2M spots, 1.7G bases Run #1: SRR002052, 12607931 spots, 416061723 bases Run #2: SRR002054, 12880281 spots, 425049273 bases Run #3: SRR002060, 25740337 spots, 849431121 bases 3:SRX012407 Submitter: GEO Study: GSE17153: Illumina sequencing of small RNAs from C. elegans embryos(SRP001363) Sample: Caenorhabditis elegans(SRS006961) Instrument: Illumina Genome Analyzer II Total: 1 run, 3M spots, 106.8M bases Run #1: SRR029428, 2965597 spots, 106761492 bases Is there a compact way to convert them into tabular format (tab separated). Hence 1 entry/row per chunk. In these case 3 rows. I tried this but doesn't seem to work. perl -laF/\n/ -000ne"print join chr(9),@F" myfile.txt

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• Hostname changed without syslog restart

  - by Arpit

  Hi, I wish to know is there any way I can changed hostname without restarting the syslog As I want the changed hostname to be reflected in the syslog messages. Thanks Arpit

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• Return value from a perl script into a shell script

  - by benjamin button

  HI below is my shell script: #!/usr/bin/ksh PERL_PATH=/usr/local/bin/perl RET1=$(${PERL_PATH} test.pl) echo $RET1 below is my perl script: #!/usr/local/bin/perl return 1; when i run the shell script: > s_.sh Can't return outside a subroutine at test.pl line 3. what is the problem over here?

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• Signal Handling in C

  - by Dave

  How can I implement signal Handling for Ctrl-C and Ctrl-D in C....So If Ctrl-C is pressed then the program will ignore and try to get the input from the user again...If Ctrl-D is pressed then the program will terminate... My program follows: int main(){ char msg[400]; while(1){ printf("Enter: "); fgets(msg,400,stdin); printf("%s\n",msg); } } Thanks, Dave

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• Start Codeblocks project from external code

  - by Dnaiel

  I have C++ code that depends on boost and other libraries, and therefore this code has a makefile that invokes boost. I am now trying to start developing this code in codeblocks in linux, so in order to do that I have two basic questions: (1) How can I import the code into codeblocks as a codeblocks new project? (2) How do I invoke the makefile with codeblocks instead of codeblocks trying to compile the code (which it would fail since codeblocks does not know that it needs to invoke boost). Sorry if it's too basic but I am quite new to C++ and codeblocks. Thanks!

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• Gems install fine but don't show as installed under rake gems

  - by Josh Pinter

  I'll show you my output here: rake gems (in /Users/jp/Sites/central/trunk) - [F] authlogic - [R] activesupport - [F] builder - [F] formtastic - [R] activesupport >= 2.3.0 - [R] actionpack >= 2.3.0 - [ ] fastercsv I = Installed F = Frozen R = Framework (loaded before rails starts) Making sure fastercsv is installed: gem which fastercsv /usr/local/lib/ruby/gems/1.8/gems/fastercsv-1.5.3/lib/fastercsv.rb After installing through a variety of methods but only one is shown here: sudo rake gems:install (in /Users/jp/central/trunk) gem install fastercsv Successfully installed fastercsv-1.5.3 1 gem installed Installing ri documentation for fastercsv-1.5.3... Installing RDoc documentation for fastercsv-1.5.3... And try it again. rake gems (in /Users/jp/Sites/central/trunk) - [F] authlogic - [R] activesupport - [F] builder - [F] formtastic - [R] activesupport >= 2.3.0 - [R] actionpack >= 2.3.0 - [ ] fastercsv I = Installed F = Frozen R = Framework (loaded before rails starts) One thing to know is that I tried unpacking the gems but if it doesn't think it's installed it can't unpack it. Another thing is that I really tried to figure this out. There's a bunch of people saying clean up local gems in your user account, always install with sudo, etc. But I've tried all that. What would you guys do to fix this? Thanks many times over, Josh

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• perl issuing os command with defined variables

  - by Vinnie Biros

  I am adding functionality into my scripts so that they can use kerberos authentication to run automatically and use secure protocols when executing. I have my functionality working for shell scripts that do exactly what i want, however i am having issues porting it to perl to work within my perl scripts as i am new to perl. Here is my working shell code and trying to get the same functionality in perl: #!/bin/sh ticketFileName=`basename $0-$$` #set filename variable to name of script plus the PID krb5CacheLocation=/tmp/$ticketFileName #set ticket cache location to /tmp + script name /usr/share/centrifydc/kerberos/bin/kinit -c $krb5CacheLocation -kt /root/.ssh/someaccount.keytab someaccount #get TGT and specifiy ticket cache location on kinit export KRB5CCNAME=$krb5CacheLocation #set the KRB5CCNAME variable to tell ssh where to look What i have attempted in perl: #!/usr/bin/perl my $ticketFileName = `basename $0-$$`; my $krb5CacheLocation = '/tmp/'.$ticketFileName; `export KRB5CCNAME=$krb5CacheLocation`; `/usr/share/centrifydc/kerberos/bin/kinit -c $krb5CacheLocation -kt /root/.ssh/unixmap0000.keytab unixmap0000`; Seems it is not liking the passed variable that i am referencing in the OS command. Anyone have any ideas or suggestions?

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• expr non-numeric argument shell script

  - by Kimi

  The below check is not working : expr non-numeric argument shell script. Always it is going to else. Please tell me what is the mistake. Earlier I was no using while so the same thing was woring fine now suddenly when I did put it in the while loop it is no working. echo "`${BOLD}` ***** Checking Memory Utilization User*****`${UNBOLD}`" echo "===================================================" IFS='|' cat configMachineDetails.txt | grep -v "^#" | while read MachineType UserName MachineName do export MEMORY_USAGE1=`ssh -f -T ${UserName}@${MachineName} prstat -t -s rss 1 2 | tr '%' ' '| awk '$5>5.0'` export LEN=`echo "$MEMORY_USAGE1"|wc -l` export CNPROC=`echo "$MEMORY_USAGE1"|grep "NPROC"|wc -l` export CTotal=`echo "$MEMORY_USAGE1"|grep "Total"|wc -l` **if [ $LEN = `expr $CNPROC + $CTotal` ] then echo "`${BOLD}`**************All usages are normal !!!!!! *************`${UNBOLD}`" else echo "`${BOLD}`**** Memory(%) is more than 5% in MachineType $MachineType UserName $UserName MachineName $MachineName *******`${UNBOLD}`" echo "====================================================" echo "$MEMORY_USAGE1" fi** done

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• Parse string with bash and extract number

  - by cleg

  Hello I've got supervisor's status output, looking like this. frontend RUNNING pid 16652, uptime 2:11:17 nginx RUNNING pid 16651, uptime 2:11:17 redis RUNNING pid 16607, uptime 2:11:32 I need to extract nginx's PID. I've done it via grep -P command, but on remote machine grep is build without perl regular expression support. Looks like sed or awk is exactly what I need, but I don't familiar with them. Please help me to find a way how to do it, thanks in advance.

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• "Correct" way to playback user movement with xlib?

  - by Dasuraga

  I'm trying to figure out a way to make demos for a program I've written with xlib, and I came across this, but, according to the author page: This extension is not intended to support general journaling and playback of user actions. Does anyone know of any functions in xlib that are intended to support playback of user actions? Does it even exist? Or could I just use this without any real problems?

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• Convert Memory Size (Human readable) into Actual Number (bytes) in Perl

  - by neversaint

  Is there an actual package in CPAN to convert such string: my $string = "54.4M" my $string2 = "3.2G" into the actual number in bytes: 54,400,000 3,200,000,000 And vice versa.

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• How to Sort ip addresses and merge two files in efficent manner using perl or *nix commands?

  - by berkay

  (*) This problem should be done in perl or any *nix commands. i'm working on a program and efficiency matters.The file1 consists ip addresses and some other data: index ipsrc portsrc ip dest port src 8 128.3.45.10 2122 169.182.111.161 80 (same ip src and dst) 9 128.3.45.10 2123 169.182.111.161 22 (same ip src and dst) 10 128.3.45.10 2124 169.182.111.161 80 (same ip src and dst) 19 128.3.45.128 62256 207.245.43.126 80 and other file2 looks like (file1 and file2 are in different order) 128.3.45.10 ioc-sea-lm 169.182.111.161 microsoft-ds 0 0 3 186 3 186 128.3.45.10 hypercube-lm 169.182.111.161 https 0 0 3 186 3 186 128.3.44.112 pay-per-view 148.184.171.6 netbios-ssn 0 0 3 186 3 186 128.3.45.12 cadabra-lm 148.184.171.6 microsoft-ds 0 0 3 186 3 186 1- SORT file1 using IP address in second column and SORT file2 using IP address in first column 2- Merge the 1st, 3rd and 5th columns of File1 with File 2 i need to create a new file which will look: 128.3.45.10 ioc-sea-lm 169.182.111.161 microsoft-ds 0 0 3 186 3 186 --> 2122 80 8 128.3.45.10 hypercube-lm 169.182.111.161 https 0 0 3 186 3 186 --> 2123 22 9 128.3.44.112 pay-per-view 148.184.171.6 netbios-ssn 0 0 3 186 3 186 --> * * * 128.3.45.12 cadabra-lm 148.184.171.6 microsoft-ds 0 0 3 186 3 186 --> * * * basically port numbers and index number will be added.

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• elegant way to make directory recursively in Python?

  - by user248237

  I would like to make a directory in a "recursive" way, i.e. have a function make_directory() that behaves as follows: make_directory("a/b/c/d/") should create directory a, then child b, then c, then d. If any of the parent directories exist it should not make them. E.g. if "a" exists, then b should be a subdir of that, and then c should be made inside b, etc. how can I do this in python? os.mkdir does not have this behavior.

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• Listing all shared memory segments used by a process on AIX5.3+

  - by Frank Meerkötter

  I would like to find all shared memory segments used by a given process. I am especially interested in figuring out the shmid so i can use it in calls to shmctl(). On Solaris i would just read /proc/$PID/map to figure out that information (field pr_shmid). The contents of that file are defined by struct prmap_t in sys/procfs. AIX also has a /proc/$PID/map file. There is also a struct prmap but unfortunately it is missing the pr_shmid field. Any ideas how i can achieve this on AIX5.3+?

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• FtpWebRequest Download File

  - by pm_2

  The following code is intended to retrieve a file via FTP. However, I'm getting an error with it. serverPath = "ftp://x.x.x.x/tmp/myfile.txt"; FtpWebRequest request = (FtpWebRequest)WebRequest.Create(serverPath); request.KeepAlive = true; request.UsePassive = true; request.UseBinary = true; request.Method = WebRequestMethods.Ftp.DownloadFile; request.Credentials = new NetworkCredential(username, password); // Read the file from the server & write to destination using (FtpWebResponse response = (FtpWebResponse)request.GetResponse()) // Error here using (Stream responseStream = response.GetResponseStream()) using (StreamReader reader = new StreamReader(responseStream)) using (StreamWriter destination = new StreamWriter(destinationFile)) { destination.Write(reader.ReadToEnd()); destination.Flush(); } The error is: The remote server returned an error: (550) File unavailable (e.g., file not found, no access) The file definately does exist on the remote machine and I am able to perform this ftp manually (i.e. I have permissions). Can anyone tell me why I might be getting this error?

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• AWK If/ElseConditional Problem

  - by neversaint

  I have a data that looks like this: foo foo scaffold_7 1 4845 6422 4845 bar bar scaffold_7 -1 14689 16310 16310 What I want to do is to process the above lines where I just want to print column 1,2,3, 7 and one more column after 7th. But with condition when printing column 7 onwards. Below is my awk script: awk '{ if ($4=="+") { {end=$6-$5}{print $1 "\t" $2 "\t" $3 "\t" $4 "\t" $7 "\t" end+$7} } else {end=$6-$5}{print $1 "\t" $2 "\t" $3 "\t" $4 "\t" $7-end "\t" $7} }' But why it doesn't achieve the desired result like this? foo foo scaffold_7 1 4845 6422 bar bar scaffold_7 -1 14689 16310 Note that the arithmetic (e.g. $7-end or end+$7) is a must. So we can't just swap column from input file. Furthermore this AWK will be inside a bash script.

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• hp -ux remote cpio copy

  - by soField

  REMOTE SERVER remsh remoteserverhostname -l remoteusername find /tmp/a1/ | cpio -o > /tmp/paketr.cpio LOCAL SERVER rcp remoteserverhostname:/tmp/paketr.cpio /tmp/aaa cpio -idmv < /tmp/paketr.cpio i'am trying to get and create directory structure from remote server to local server i can do this with following command list but i wonder if i can do this with just one command by running cpio with pass-through mode remsh remoteserverhostname find /tmp/a1 | cpio -pd /tmp current </tmp/tmp/a1/b1/y1> newer current </tmp/tmp/a1/b1/z1> newer current </tmp/tmp/a1/b2/l2smc> newer "/tmp/a1/b3": No such file or directory Cannot stat </tmp/a1/b3>. 0 blocks so when i try to cpio -pd option , i am expecting it to create directories for me but it does not i was using rcp but its not preserving symbolic links :( what can i do ? hp-ux

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• Options for Linux OS executable archive files - self installers

  - by Matt1776

  I am looking to create a web-project that is able to install with a program. The user should be able to download an archive file or tar file, run it (executable), and the setup script would ask for paths and configurable values and then unpack its 'payload' and sorting out the contents for deployment. This would be a Linux version of the MSI installer. Is there such a thing for Linux operating systems? This does not involve kernel level manipulations. All it needs to do is copy directories and files on the filesystem, which should cover about 80% if not more of all the *nix distributions.

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• Is there a POSIX syscall to resolve file system paths?

  - by Mike

  Is there a POSIX syscall to resolve filesystem paths? I have the CWD for a path, as well as the path to a file from that CWD. I can't use chdir to switch to the directory because I need to resolve paths from multiple threads simultaneously. I considered appending a / in between the CWD and the path, but for some reason it feels like that's hacky. Is that the proper way to resolve relative paths?

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• Renaming and Moving Files in Bash

  - by KT

  HI, I'm completely new to Bash and StackOverflow. I need to move a set of files (all contained in the same folder) to a target folder where files with the same name could already exist. In case a specific file exists, I need to rename the file before moving it, by appending for example an incremental integer to the file name. The extensions should be preserved. The file names could contain dots in the middle. Originally, I was thinking about comparing the two folders to have a list of the existing files (I did this with "comm"), but then I got a bit stuck. I think I'm just trying to do things in the most complicated possible way. Any hint to do this in the "bash way"?

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• Inserting text to a file with Sed within Bash Script

  - by neversaint

  I tried to insert a text to the first line of a file using sed. I do this inside a bash script. But why it hangs at the line of sed execution? #! /bin/bash # Command to execute # ./mybashcode.sh test.nbq nbqfile=$1 nbqbase=$(basename $nbqfile nbq) taglistfiletemp="${nbqbase}taglist_temp" taglistfile="${nbqbase}taglist" ./myccode $nbqfile | sort | uniq -c | awk '{print $2}' > $taglistfiletemp noftags=$(wc -l $taglistfiletemp | awk '{print $1}') echo $noftags # We want to append output of noftags # to the first line of taglistfile sed '1i\ $noftags' > $taglistfile # why it hangs here # the content of taglistfile is NIL

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• Detect number of IDLE processors ruby

  - by Yannick Wurm

  Hello, I work on shared linux machines with between 4 and 24 cores. To make best use of them, I use the following code to detect the number of processors from my ruby scripts: return `cat /proc/cpuinfo | grep processor | wc -l`.to_i (perhaps there is a pure-ruby way of doing this?) But sometimes a colleague is using six or eight of the 24 cores. (as seen via top). How can I get an estimate of the number of currently unused processors that I can use without making anyone upset? Thanks!

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• Is it possible to view the "source" for a ksh function?

  - by stevec

  Our ksh environment defines several functions, which can be listed using then "functions" ksh function. Is it possible to see the definition (ie source code) for these functions? This seems like an obvious question, but I've tried all manner of parameters to the "functions" and "function" functions with no luck. Thanks, Steve

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• Decreasing Cumulative of Frequency Series Using Perl

  - by neversaint

  I have a data that looks like this: 3 2 1 5 What I want to get is the "decreasing" cumulative of this data yielding 11 8 6 5 0 What is the compact way of doing that in Perl?

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