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  • Disable raid member check upon mount to mount damaged nvidia raid1 member

    - by Halfgaar
    Hi, A friend of mine destroyed his Nvidia RAID1 array somehow and in trying to fix it, he ended up with a non-working array. Because of the RAID metadata, the actual disk data was stored at an offset from the beginning. I was able to identify this offset with dd and a hexeditor and then I used losetup to create a loop device with the proper offset, so that I could mount the partition. It was then that I ran into problems, namely that mount says: "mount: unknown filesystem type 'nvidia_raid_member'". I also had this when trying to mount a Linux MD component the other day, and because I can remember that doing that in the past worked, I surmised that it may be some kind of protection. I therefore booted an old Sysrescue CD and tried it there, which worked (because of the older version of mount/libc/kernel/whatever). I still need to try to get more data, and because I don't want to keep using that SysrecueCD, I'd like to be able to mount the disk on my normal system. So, my question is: can the check for a disk being a raid member be disabled? I guess I could also zero out blocks that look like the raid block, but I'd rather not... I made an image of the disk with par2 data, so it's revertable, but still...

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  • What tells initramfs or the Ubuntu Server boot process how to assemble RAID arrays?

    - by Brad
    The simple question: how does initramfs know how to assemble mdadm RAID arrays at startup? My problem: I boot my server and get: Gave up waiting for root device. ALERT! /dev/disk/by-uuid/[UUID] does not exist. Dropping to a shell! This happens because /dev/md0 (which is /boot, RAID 1) and /dev/md1 (which is /, RAID 5) are not being assembled correctly. What I get is /dev/md0 isn't assembled at all. /dev/md1 is assembled, but instead of using /dev/sda2, /dev/sdb2, /dev/sdc2, and /dev/sdd2, it uses /dev/sda, /dev/sdb, /dev/sdc, /dev/sdd. To fix this and boot my server I do: $(initramfs) mdadm --stop /dev/md1 $(initramfs) mdadm --assemble /dev/md0 /dev/sda1 /dev/sdb1 /dev/sdc1 /dev/sdd1 $(initramfs) mdadm --assemble /dev/md1 /dev/sda2 /dev/sdb2 /dev/sdc2 /dev/sdd2 $(initramfs) exit And it boots properly and everything works. Now I just need the RAID arrays to assemble properly at boot so I don't have to manually assemble them. I've checked /etc/mdadm/mdadm.conf and the UUIDs of the two arrays listed in that file match the UUIDs from $ mdadm --detail /dev/md[0,1]. Other details: Ubuntu 10.10, GRUB2, mdadm 2.6.7.1 UPDATE: I have a feeling it has to do with superblocks. $ mdadm --examine /dev/sda outputs the same thing as $ mdadm --examine /dev/sda2. $ mdadm --examine /dev/sda1 seems to be fine because it outputs information about /dev/md0. I don't know if this is the problem or not, but it seems to fit with /dev/md1 getting assembled with /dev/sd[abcd] instead of /dev/sd[abcd]2. I tried zeroing the superblock on /dev/sd[abcd]. This removed the superblock from /dev/sd[abcd]2 as well and prevented me from being able to assemble /dev/md1 at all. I had to $ mdadm --create to get it back. This also put the super blocks back to the way they were.

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  • MemCache-repcached compile error

    - by Ramy Allam
    I'm trying to install [memcached-1.2.8-repcached-2.2.1]( http://sourceforge.net/projects/repcached/files/latest/download?source=files) And I have the following error after running the make command: make all-recursive make[1]: Entering directory `/usr/local/src/pro/memcached-1.2.8-repcached-2.2.1' Making all in doc make[2]: Entering directory `/usr/local/src/pro/memcached-1.2.8-repcached-2.2.1/doc' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/usr/local/src/pro/memcached-1.2.8-repcached-2.2.1/doc' make[2]: Entering directory `/usr/local/src/pro/memcached-1.2.8-repcached-2.2.1' gcc -DHAVE_CONFIG_H -I. -DNDEBUG -g -O2 -MT memcached-memcached.o -MD -MP -MF .d eps/memcached-memcached.Tpo -c -o memcached-memcached.o test -f 'memcached.c' || echo './'memcached.c memcached.c: In function ‘add_iov’: memcached.c:697: error: ‘IOV_MAX’ undeclared (first use in this function) memcached.c:697: error: (Each undeclared identifier is reported only once memcached.c:697: error: for each function it appears in.) make[2]: * [memcached-memcached.o] Error 1 make[2]: Leaving directory `/usr/local/src/pro/memcached-1.2.8-repcached-2.2.1' make[1]: * [all-recursive] Error 1 make[1]: Leaving directory `/usr/local/src/pro/memcached-1.2.8-repcached-2.2.1' make: * [all] Error 2 OS : Centos5.7 64bit gcc-4.1.2-51.el5 gcc-c++-4.1.2-51.el5 libgcc-4.1.2-51.el5 Note : Memcached and memcache extension for php are already installed root@server[~]# memcached -h memcached 1.4.5 php ext http://pecl.php.net/get/memcache-2.2.6.tgz

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  • SVN and WebSVN with different users access restriction on multiple repositories on linux

    - by user55658
    and first of all sorry for my english. I've installed an ubuntu server 10.04.1 with apache2, subversion, svn_dav and websvn. (and others services of course, like php5, mysql 5.1, etc). I've configured my svn with multiple repositories, and each one with differents groups and users, like: /var/myrepos/repo1 group: mygroup1 /var/myrepos/repo2 group: mygroup2 /var/myrepos/repo3 user: johndoe With an easy access on svn_dav, works perfectly, ie: http://myserver/svnrepo1 accesibly only for users on mygroup1 with theirs users of linux and passwords of svn. Also works for the other repos with their users and groups. But when i tried with websvn, shows all repos without take care than if user on mygroup1 can view repo2 (that's i dont want do). You can login as any user on mygroup1, mygroup2, or johndoe, and you login into all repositories. I'll try to find a solution and I'll post the news, if anyone can helpme with this I'll preciated so much!!! Thanks for all I show my files: /etc/apache2/mods-available/dav_svn.conf <Location /svnrepo1> DAV svn SVNPath /var/myrepos/repo1 AuthType Basic AuthName "Repositorio Subversion de MD" AuthUserFile /etc/apache2/dav_svn.passwd Require valid-user </Location> <Location /websvn/> Options FollowSymLinks order allow,deny allow from all AuthType Basic AuthName "Subversion Repository" AuthUserFile /etc/apache2/dav_svn.passwd Require valid-user </Location>

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  • How to plug power/reset buttons from case to motherboard leads?

    - by MaxMackie
    I have a motherboard I salvaged from a pre-assembled computer. Except now I'm trying to use it in my own custom build. The problem is, this motherboard doesn't have any documentation because it was never meant to be used by consumers (as far as I know). I need to plug in my case's power/reset/hdd-light plugs into the motherboard. I usually check the documentation of the board to see which leads go to what connector, but I have no documentation for the board. So, as I see it, I have two options: I find the documentation (I've emailed gateway customer service, but I'm unsure of how successful I'll be with that). I simply test the leads one after the other (can this cause damage if plugged into the wrong leads?) However, there might even be a standard for which leads do what action (I'm not sure about this). For reference, my motherboard's SN/MD (?) is: H57M01G1-1.1-8EKS3H Does anyone have any idea if I can find documentation or find another way to be sure if my connections are correct?

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  • Debian software raid 1: boot from both disk

    - by bsreekanth
    I newly installed debian squeeze with software raid.The way I did was, as also given in this thread. I have 2 HDD with 500 GB each. For each of them, I created 3 partitions (/boot, / and swap) I selected the hard drive and created a new partition table I created a new partition that was 1GB. I then specified to use the partition as a Physical Volume for RAID. and used for /boot and enabled bootable. Created another partition, which is of 480 GB, and then specified to use the partition as a Physical Volume for RAID. and used for /. Created another partion and used for swap Then RAID configuration: Through Configure RAID menu - create MD device - (2 for the number of drives, 0 for spare devices) Next select the partitions you want to be members of /dev/MD0. I selected /dev/sda1 and /dev/sdb1 (for /boot) Next select the partitions you want to be members of /dev/MD1. I selected /dev/sda6 and /dev/sdb6 (for /) And no RAID for swap partitions 'Finish Partitioning and write changes to disk' -- Finish the rest of the install like normal Everything is ok now, except I am not sure how to test my raid config. When I pull the power of the HDD, it only boots from one disk. I read in some forum that I may have to install GRUB manually on the other. In Debian Squeeze, there is no grub command. Not sure how to make my software raid bootable from both disk. Also, please comment on my steps above. Anything unusual. I configured /boot partitions of both disks to be boot=yes. Not sure whether that is ok. Thanks, Bsr

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  • Dash (-) in directory listing

    - by Mazzy
    I've Googled around for this to no avail, I'm sure its just something simple but I have not been able to figure this out perhaps because searching in Google or SF for a "-" can be problematic. I had a strange directory listing show up the other day in my git repository within Drupal. Listing my sites directory looks like this: -sh-4.1$ ls -al total 52 drwxr-xr-x 5 (hide) (hide) 4096 Dec 6 16:15 . drwxr-xr-x 24 (hide) (hide) 4096 Dec 11 16:22 .. -rw-rw-r-- 1 (hide) (hide) 24271 Dec 6 15:57 – drwxrwxr-x 4 (hide) (hide) 4096 Sep 17 11:53 all drwxr-xr-x 3 (hide) (hide) 4096 Sep 17 11:54 default drwxrwxr-x 8 (hide) (hide) 4096 Dec 11 17:40 .git -rw-rw-r-- 1 (hide) (hide) 476 Sep 17 11:53 .gitignore -rw-rw-r-- 1 (hide) (hide) 81 Sep 17 11:53 README.md This "-" file cannot be opened and does not appear to be a symlink, although when I execute "cd -" I get this: -sh-4.1$ cd - /home/sites/dev1.(hide).com That is coincidentally or not the users home directory, and the site's root directory. The other strange this is this entry does not show up for any other user browsing this same directory. Nor does it show up for other users period in their Git directories. The entry cannot be removed via RM. Running Centos 6.2 by the way...

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  • Deciphering an IIS6 Httperr log file

    - by smackaysmith
    We have a Windows 2003 R2 SP2 server with iis6 that is creating a 1024kb httperr file every minute. I can't figure out what I'm looking at. Here's a snippet: 2010-03-24 13:15:05 10.53.2.35 1667 10.53.2.12 80 HTTP/1.1 PUT /hserver.dll?&V01|&IMAC=0080646077AB|CID=32|CN=LWT0080646077AB|ED=1|IP=10.53.2.35|SM=255.255.255.0|GW=10.53.2.1|SN=10.53.2.255|DM=logs.com|1D=10.53.2.12|2D=10.101.2.12|0D=1|AL=/usr/sbin/netxserv|AV=4.1.0.0|CP=VIAüEstherüprocessorüü800MHz|CPS=800|RM=190512|B1=1.18|PD2=1024x768x16ü@ü60Hz|IM=6.6.2-02|CI=3600|SN#=6KHDG301300|OS=23|VI=1|P1=24|TZO=-301|TZ=CDT|FS=128|MD=2003-04|CO=|LO=|AP0=BaseüSystem|NA|6.6.2-02|AP1=RapportüAgent|NA|4.1.0-3.26|AP2=TrueType|NA|6.8.0-3.4|AP3=WebFonts|NA|2.0.4-3.6|AP4=TrueTypeüFonts|NA|6.8.0-3.5|AP5=Network_login|NA|1.0.0-1.0.3|AP6=ScreenüSaver|NA|3.13|AP7=DMonitor|NA|1.0.0-0.4.0|AP8=MozillaüFirefox_15|NA|1.5.0.8-3.6|AP9=RemoteüShadow|NA|3.17|AP10=RemoteüDesktop|NA|1.6.0-1.0|AP11=SNMP|NA|5.1.3.1-3.13|AP12=LinuxüPrinting|NA|3.8.27-3.33|AP13=SSH|NA|3.8.1-3.25|AP14=ThinPrint|NA|6.2.87-0.2|AP15=XDMCP|NA|6.8.0-3.29|AP16=Ericom|NA|8.2.0-3.29|AP17=Daylightüsavingütimeüupdate|NA|1.1.0-1.0.0| 411 - LengthRequired - What on earth am I looking at? Nothing in the system or app logs. Finally, in iis manager, Default Web Site label has boxes instead of spaces. Very odd.

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  • Degraded RAID-5 array with lvm2 lost superblock and partition table

    - by Fred Phillips
    I have a RAID-5 array of 4x1TB hard disks with one lvm2 partition on Ubuntu Linux 10.04 LTS. One of the disks has failed. I have re-assembled the array without this failed disk but now mdadm --examine claims the array has no superblock and fdisk says it has no partition table. What can I do to recover the data? # mdadm -D /dev/md0 /dev/md0: Version : 1.2 Creation Time : Sat Mar 5 14:43:49 2011 Raid Level : raid5 Array Size : 2930276352 (2794.53 GiB 3000.60 GB) Used Dev Size : 976758784 (931.51 GiB 1000.20 GB) Raid Devices : 4 Total Devices : 4 Persistence : Superblock is persistent Update Time : Sat Mar 5 15:06:49 2011 State : clean, degraded Active Devices : 3 Working Devices : 3 Failed Devices : 1 Spare Devices : 0 Layout : left-symmetric Chunk Size : 512K Name : boba:1 (local to host boba) UUID : 52eb4bc9:c3d8aab5:e0699505:e0e1aa05 Events : 18 Number Major Minor RaidDevice State 0 8 1 0 active sync /dev/sda1 1 8 65 1 active sync /dev/sde1 2 8 49 2 active sync /dev/sdd1 3 0 0 3 removed 4 8 17 - faulty spare /dev/sdb1 # mdadm --examine /dev/md0 mdadm: No md superblock detected on /dev/md0. # fdisk -l /dev/md0 Disk /dev/md0: 3000.6 GB, 3000602984448 bytes 2 heads, 4 sectors/track, 732569088 cylinders Units = cylinders of 8 * 512 = 4096 bytes Sector size (logical/physical): 512 bytes / 512 bytes I/O size (minimum/optimal): 524288 bytes / 1572864 bytes Disk identifier: 0x00000000 Disk /dev/md0 doesn't contain a valid partition table # cat /proc/mdstat Personalities : [raid6] [raid5] [raid4] [linear] [multipath] [raid0] [raid1] [raid10] md0 : active raid5 sdb1[4](F) sda1[0] sdd1[2] sde1[1] 2930276352 blocks super 1.2 level 5, 512k chunk, algorithm 2 [4/3] [UUU_] unused devices: <none>

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  • How to get an inactive RAID device working again?

    - by Jonik
    After booting, my RAID1 device (/dev/md_d0 *) sometimes goes in some funny state and I cannot mount it. * Originally I created /dev/md0 but it has somehow changed itself into /dev/md_d0. # mount /opt mount: wrong fs type, bad option, bad superblock on /dev/md_d0, missing codepage or helper program, or other error (could this be the IDE device where you in fact use ide-scsi so that sr0 or sda or so is needed?) In some cases useful info is found in syslog - try dmesg | tail or so The RAID device appears to be inactive somehow: # cat /proc/mdstat Personalities : [linear] [multipath] [raid0] [raid1] [raid6] [raid5] [raid4] [raid10] md_d0 : inactive sda4[0](S) 241095104 blocks # mdadm --detail /dev/md_d0 mdadm: md device /dev/md_d0 does not appear to be active. Question is, how to make active the device again (using mdmadm, I presume)? (Other times it's alright (active) after boot, and I can mount it manually without problems. But it still won't mount automatically even though I have it in /etc/fstab: /dev/md_d0 /opt ext4 defaults 0 0 So a bonus question: what should I do to make the RAID device automatically mount at /opt at boot time?) This is an Ubuntu 9.10 workstation. Background info about my RAID setup in this question.

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  • How to force mdadm to stop RAID5 array?

    - by lucek
    I have /dev/md127 RAID5 array that consisted of four drives. I managed to hot remove them from the array and currently /dev/md127 does not have any drives: cat /proc/mdstat Personalities : [linear] [multipath] [raid0] [raid1] [raid6] [raid5] [raid4] [raid10] md0 : active raid1 sdd1[0] sda1[1] 304052032 blocks super 1.2 [2/2] [UU] md1 : active raid0 sda5[1] sdd5[0] 16770048 blocks super 1.2 512k chunks md127 : active raid5 super 1.2 level 5, 512k chunk, algorithm 2 [4/0] [____] unused devices: <none> and mdadm --detail /dev/md127 /dev/md127: Version : 1.2 Creation Time : Thu Sep 6 10:39:57 2012 Raid Level : raid5 Array Size : 8790402048 (8383.18 GiB 9001.37 GB) Used Dev Size : 2930134016 (2794.39 GiB 3000.46 GB) Raid Devices : 4 Total Devices : 0 Persistence : Superblock is persistent Update Time : Fri Sep 7 17:19:47 2012 State : clean, FAILED Active Devices : 0 Working Devices : 0 Failed Devices : 0 Spare Devices : 0 Layout : left-symmetric Chunk Size : 512K Number Major Minor RaidDevice State 0 0 0 0 removed 1 0 0 1 removed 2 0 0 2 removed 3 0 0 3 removed I've tried to do mdadm --stop /dev/md127 but: mdadm --stop /dev/md127 mdadm: Cannot get exclusive access to /dev/md127:Perhaps a running process, mounted filesystem or active volume group? I made sure that it's unmounted, umount -l /dev/md127 and confirmed that it indeed is unmounted: umount /dev/md127 umount: /dev/md127: not mounted I've tried to zero superblock of each drive and I get (for each drive): mdadm --zero-superblock /dev/sde1 mdadm: Unrecognised md component device - /dev/sde1 Here's output of lsof|grep md127: lsof|grep md127 md127_rai 276 root cwd DIR 9,0 4096 2 / md127_rai 276 root rtd DIR 9,0 4096 2 / md127_rai 276 root txt unknown /proc/276/exe What else can I do? LVM is not even installed so it can't be a factor.

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  • Cannot get at data in my NAS

    - by Ben
    I've got a bit of an issue that I'm hoping you can help me with. I have an Iomega ix4 as my NAS. This runs Linux and each drive in the box has 2 partitions: one for the OS and RAID info, and the second for the actual data. I had it configured as RAID5. Recently one of the drives failed. At this point all of the data was available, it was just reporting a failed drive. I had a drive of the same capacity (although not the exact same spec) which I swapped in place of the failed drive. It recognised it, and started to rebuild the data protection. So far so good ... or so I thought. The next day, after data protection had finished reconstructing, the NAS was telling me that 4 new drives had been added, and wanted confirmation to overwrite the data. Obviously I declined to do this. I swapped the failed drive back in again, in the hope that it would return to its previous state of the data being accessible, but one failed disk. However it didn't - it still tells me that the NAS has 4 new drives in it. I am hopeful that the actual data is untouched, so what I need to do is get it to rebuild the RAID without touching the data on the disks. I have ssh access, and have run stuff like mdadm --examine to see what I can find. The mdadm.conf file has no entry in the "definitions of existing MD arrays" section. I have not run any actual rebuilding commands as yet, because this is entering an area which I am out of my depth in. Please can someone advise the best way of getting my data? Thanks.

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  • Automatically creating volume partitions on boot

    - by Justin Meltzer
    I followed this guide: http://www.mongodb.org/display/DOCS/Amazon+EC2+Quickstart to set up Mongodb. It had me create a RAID 10 array out of the four devices on EBS. Then it had me create a physical volume, a volume group, and three logical volumes out of that RAID 10 array. Lastly it had me create ext4 filesystems out of the logical volumes and mount them. Now the quickstart guide had me put two things in place so that these steps would be replicated on reboot of the system. It had me add some instructions to the mdadm.conf file to automatically create the RAID 10 array, and it also had me add instructions to the fstab file to automatically mount the filesystem for each logical volume. However, the quickstart guide does not have anything for automatically creating the logical volumes from the RAID 10 array. I checked my system and see that each of the four devices are part of a RAID array: $ sudo mdadm -Q /dev/sdh1 /dev/sdh1: is not an md array /dev/sdh1: device 0 in 4 device unknown raid10 array. Use mdadm --examine for more detail. However, the filesystem is never created or mounted from fstab because it's trying to mount it from logical volumes that were never created (or so it seems). My question is, how can I automatically accomplish all the steps from the quickstart guide on a reboot of the system, and what config file do I need to add data to so that I can automatically create these volume partions after the RAID 10 is created but before the filesystem is mounted. Also I'm unsure whether fstab actually creates and mounts the filesystem or just mounts the filesystem.

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  • mdadm: Replacing array with entirely new drives

    - by hellfur
    I have a server with three 500GB drives, with most of my data in a RAID5 configuration spanning the three of them. I just purchased and installed four 1TB drives, and the intention is to move off of the old drives and onto the new ones. I have enough SATA ports and power connectors to power all seven of my drives at once, so I've kept the old RAID running while I figure out what to do with the new drives. My question is: Should I create a whole new array on the 1TB drives, then move everything over and reconfigure linux to boot from the new md arrays? Or should I just expand the array, swapping out each of the three 500GBs with the 1TB, then adding the final drive? I've read up on the mdadm extending drive setup, and it makes sense, but I imagine I would use one of the drives as a full backup while I move things over, then add that drive back into the array once things are up and running on three of the 1TB drives, so there's some complication in going that route as well... I'm just not sure which is safer/recommended.

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  • How to verify that a physical volume is encrypted? (Ubuntu 10.04 w/ LUKS)

    - by Bob B.
    I am very new to LUKS. During installation, I tried to set up an encrypted physical volume so that everything underneath it would be encrypted. I chose "Use as: physical volume for encryption," the installation completed and I have a working environment. How can I verify that the PV is indeed encrypted? I was never prompted to provide a passphrase, so I most likely missed a step somewhere. At the end of the day, I'd like whole disk encryption if that's possible, so I don't have to worry about which parts of the file system are encrypted and which aren't. If I did miss something, do I have to start over and try again, or can it be done (relatively easily?) after the fact? I would prefer not to introduce more complexity by using TrueCrypt, etc. Environment details: The drives are md raid1. One volume group. A standard boot lv. An encrypted swap lv using a random key (which seems to be working fine). Thank you in advance for your help. This is very much a learn-as-I-go experience.

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  • 'Make' command compiling errors

    - by G_T
    Im trying to locally install a program which is written in C++. I have downloaded the program and am attempting to use the "make" command to compile the program as the programs instructions dictate. However when I do I get this error: /usr/include/stdc-predef.h:30:26: fatal error: bits/predefs.h: No such file or directory compilation terminated. Looking around on the internet some people seem to address this problem by sudo apt-get install libc6-dev-i386 I checked to see if this package was installed and it was not. When I try to install it I get E: Unable to locate package libc6-dev-i386 I have already run sudo apt get update Im sure this is a rookie question but any help is appreciated, I'm running 13.10 32-bit. UPDATE: I've tried other suggestions I've found on similar error. All I have managed is a different but similar error. Here is what I get. Geoffrey@Geoffrey-Latitude-E6400:/usr/local/src/trinityrnaseq_r2013_08_14$ make Using gnu compiler for Inchworm and Chrysalis cd Inchworm && (test -e configure || autoreconf) \ && ./configure --prefix=`pwd` && make install checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking for g++... g++ checking for C++ compiler default output file name... a.out checking whether the C++ compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking for style of include used by make... GNU checking dependency style of g++... gcc3 checking for library containing cos... none required configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating config.h config.status: config.h is unchanged config.status: executing depfiles commands make[1]: Entering directory `/usr/local/src/trinityrnaseq_r2013_08_14/Inchworm' Making install in src make[2]: Entering directory `/usr/local/src/trinityrnaseq_r2013_08_14/Inchworm/src' if g++ -DHAVE_CONFIG_H -I. -I. -I.. -pedantic -fopenmp -Wall -Wextra -Wno-long-long -Wno-deprecated -m64 -g -O2 -MT Fasta_entry.o -MD -MP -MF ".deps/Fasta_entry.Tpo" -c -o Fasta_entry.o Fasta_entry.cpp; \ then mv -f ".deps/Fasta_entry.Tpo" ".deps/Fasta_entry.Po"; else rm -f ".deps/Fasta_entry.Tpo"; exit 1; fi In file included from Fasta_entry.hpp:4:0, from Fasta_entry.cpp:1: /usr/include/c++/4.8/string:38:28: fatal error: bits/c++config.h: No such file or directory #include <bits/c++config.h> ^ compilation terminated. make[2]: *** [Fasta_entry.o] Error 1 make[2]: Leaving directory `/usr/local/src/trinityrnaseq_r2013_08_14/Inchworm/src' make[1]: *** [install-recursive] Error 1 make[1]: Leaving directory `/usr/local/src/trinityrnaseq_r2013_08_14/Inchworm' make: *** [inchworm] Error 2

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  • Can't build gcc anymore since upgrade to 11.10

    - by Raphael R.
    On Monday I've upgraded to from Ubuntu 11.04 (my initial installation) to 11.10 and now I can't build gcc from source anymore. Since I forgot to uninstall the gcc package before the upgrade, Ubuntu replaced my 4.7.0 compiler with it's stable 4.6.1. So I tried to build the SVN sources again, but it fails. I've most recently tried it with SVN revision 180193. After some time, the build fails with the following message: /home/raphael/devel/gcc/build/./gcc/xgcc -B/home/raphael/devel/gcc/build/./gcc/ -B/usr/i686-pc-linux-gnu/bin/ -B/usr/i686-pc-linux-gnu/lib/ -isystem /usr/i686-pc-linux-gnu/include -isystem /usr/i686-pc-linux-gnu/sys-include -g -O2 -O2 -I. -I. -I../../src/gcc -I../../src/gcc/. -I../../src/gcc/../include -I../../src/gcc/../libdecnumber -I../../src/gcc/../libdecnumber/bid -I../libdecnumber -I../../src/gcc/../libgcc -g -O2 -DIN_GCC -W -Wall -Wwrite-strings -Wcast-qual -Wstrict-prototypes -Wmissing-prototypes -Wold-style-definition -isystem ./include -fPIC -g -DHAVE_GTHR_DEFAULT -DIN_LIBGCC2 -fbuilding-libgcc -fno-stack-protector -I. -I. -I../.././gcc -I../../../src/libgcc -I../../../src/libgcc/. -I../../../src/libgcc/../gcc -I../../../src/libgcc/../include -I../../../src/libgcc/config/libbid -DENABLE_DECIMAL_BID_FORMAT -DHAVE_CC_TLS -DUSE_TLS -o _ashldi3.o -MT _ashldi3.o -MD -MP -MF _ashldi3.dep -DL_ashldi3 -c ../../../src/libgcc/../gcc/libgcc2.c \ -fvisibility=hidden -DHIDE_EXPORTS In file included from /usr/include/stdio.h:28:0, from ../../../src/libgcc/../gcc/tsystem.h:88, from ../../../src/libgcc/../gcc/libgcc2.c:29: /usr/include/features.h:323:26: fatal error: bits/predefs.h: File or directory not found. I've cofigured it with: ~/devel/gcc/build$ ../src/configure --prefix=/usr --enable-languages=c++ And make it with: ~/devel/gcc/build$ make -j4 Just to be sure, I did a rm -rf * in the build directory in case there's some broken stuff inside. Didn't help, though. That's the backstory. I tried to fix it and searched for the bits/predefs.h. It's inside /usr/include/i386-linux-gnu. I temporarily fixed the problem by doing ~/devel/gcc/build$ C_INCLUDE_PATH=/usr/include/i386-linux-gnu make -j4 Which is only temporary because now gcc complains that it can't find crti.o. Which i can find in /usr/lib/i386-linux-gnu. Now i could also set C_LIBRARY_PATH - actually it doesn't work - but I feel like I'm fighting the system here. Also, even if it succeeds, my newly built compiler would also not know about the i386-linux-gnu stuff. So I would have to set C_LIBRARY_PATH and C_INCLUDE_PATH before every build of every project I have. I could add it to my .bashrc but that subverts the system even more. So, how do I tell the build process: That there are additional include/lib directories, and That it should build a gcc which respects them too? Edit: I forgot to include the command which causes the above error message. Also I can think of another solution: Copy the stuff from /usr/include/i386-linux-gnu to /usr/include (same thing for /usr/lib/i386-linux-gnu to /usr/lib). But that doesn't feel right, either. Finally, the system's gcc 4.6.1 can compile other applications just fine, except mine, which use C++11 features not present in the 4.6 series.

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  • how to do loop for array which have different data for each array

    - by Suriani Salleh
    i have this file XML file.. I need to convert it form XMl to MYSQL. if it have only one array than i know how to do it.. now my question how to extract this two array Each array will have different value of data..for example for first array, pmIntervalTxEthMaxUtilization data : 0,74,0,0,48 and for second array pmIntervalRxPowerLevel data: -79,-68,-52 , pmIntervalTxPowerLevel data: 13,11,-55 . can some one help to guide how write php code to extract this xml file to MY SQL <mi> <mts>20130618020000</mts> <gp>900</gp> <mt>pmIntervalRxUndersizedFrames</mt> [ this is first array] <mt>pmIntervalRxUnicastFrames</mt> <mt>pmIntervalTxUnicastFrames</mt> <mt>pmIntervalRxEthMaxUtilization</mt> <mt>pmIntervalTxEthMaxUtilization</mt> <mv> <moid>port:1:3:23-24</moid> <sf>FALSE</sf> <r>0</r> [the data for 1st array i want to insert in DB] <r>0</r> <r>0</r> <r>5</r> <r>0</r> </mv> </mi> <mi> <mts>20130618020000</mts> <gp>900</gp> <mt>pmIntervalRxSES</mt> [this is second array] <mt>pmIntervalRxPowerLevel</mt> <mt>pmIntervalTxPowerLevel</mt> <mv> <moid>client:1:3:23-24</moid> <sf>FALSE</sf> <r>0</r> [the data for 2nd array i want to insert in DB] <r>-79</r> <r>13</r> </mv> </mi> this is the code for one array that i write..i dont know how to write code for two array because the field appear two times and have different data value for each array // Loop through the specified xpath foreach($xml->mi->mv as $subchild) { $port_no = $subchild->moid; $rx_ses = $subchild->r[0]; $rx_es = $subchild->r[1]; $tx_power = $subchild->r[10]; // dump into database; ........................... i have do a little research on it this is the out come... $i = 0; while( $i < 5) { // Loop through the specified xpath foreach($xml->md->mi->mv as $subchild) { $port_no = $subchild->moid; $rx_uni = $subchild->r[10]; $tx_uni = $subchild->r[11]; $rx_eth = $subchild->r[16]; $tx_eth = $subchild->r[17]; // dump into database; .............................. $i++; if( $i == 5 )break; } } // Loop through the specified xpath foreach($xml->mi->mv as $subchild) { $port_no = $subchild->moid; $rx_ses = $subchild->r[0]; $rx_es = $subchild->r[1]; $tx_power = $subchild->r[10]; // dump into database; .......................

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  • Get to Know a Candidate (8 of 25): Rocky Anderson&ndash;Justice Party

    - by Brian Lanham
    DISCLAIMER: This is not a post about “Romney” or “Obama”. This is not a post for whom I am voting. Information sourced for Wikipedia. Ross Carl “Rocky” Anderson served two terms as the 33rd mayor of Salt Lake City, Utah, between 2000 and 2008.  He is the Executive Director of High Road for Human Rights.  Prior to serving as Mayor, he practiced law for 21 years in Salt Lake City, during which time he was listed in Best Lawyers in America, was rated A-V (highest rating) by Martindale-Hubbell, served as Chair of the Utah State Bar Litigation Section[4] and was Editor-in-Chief of, and a contributor to, Voir Dire legal journal. As mayor, Anderson rose to nationwide prominence as a champion of several national and international causes, including climate protection, immigration reform, restorative criminal justice, LGBT rights, and an end to the "war on drugs". Before and after the invasion by the U.S. of Iraq in 2003, Anderson was a leading opponent of the invasion and occupation of Iraq and related human rights abuses. Anderson was the only mayor of a major U.S. city who advocated for the impeachment of President George W. Bush, which he did in many venues throughout the United States. Anderson's work and advocacy led to local, national, and international recognition in numerous spheres, including being named by Business Week as one of the top twenty activists in the world on climate change,serving on the Newsweek Global Environmental Leadership Advisory Board, and being recognized by the Human Rights Campaign as one of the top ten straight advocates in the United States for LGBT equality. He has also received numerous awards for his work, including the EPA Climate Protection Award, the Sierra Club Distinguished Service Award, the Respect the Earth Planet Defender Award, the National Association of Hispanic Publications Presidential Award, The Drug Policy Alliance Richard J. Dennis Drugpeace Award, the Progressive Democrats of America Spine Award, the League of United Latin American Citizens Profile in Courage Award, the Bill of Rights Defense Committee Patriot Award, the Code Pink (Salt Lake City) Pink Star honor, the Morehouse University Gandhi, King, Ikeda Award, and the World Leadership Award for environmental programs. Formerly a member of the Democratic Party, Anderson expressed his disappointment with that Party in 2011, stating, “The Constitution has been eviscerated while Democrats have stood by with nary a whimper. It is a gutless, unprincipled party, bought and paid for by the same interests that buy and pay for the Republican Party." Anderson announced his intention to run for President in 2012 as a candidate for the newly-formed Justice Party. Although founded by Rocky Anderson of Utah, the Justice Party was first recognized by Mississippi and describes itself as advocating economic justice through measures such as green jobs and a right to organize, environment justice through enforcing employee safeguards in trade agreements, and social and civic justice through universal health care. In its first press release, the Utah Justice Party set forth its goals for justice in the economic, environmental, social and civic realms, along with a call to rid the corrupting influence of big money from government, to reverse the erosion of rights guaranteed by the Constitution, and to stop draining American resources to support illegal wars of aggression. Its press release says its grassroots supporters believe that now is the time for all to "shed their skeptical view that their voices don't matter", that "our 2-party system is a 'duopoly' controlled by the same corporate and military interests", and that the people must act to ensure "that our nation will achieve a brighter, sustainable future.” Anderson has ballot access in CO, CT, FL, ID, LA, MI, MN, MS, NJ, NM, OR, RI, TN, UT, VT, WA (152 electoral votes) and has write-in access in AL, AK, DE, GA, IL, IO, KS, MD, MO, NE, NH, NY, PA, TX Learn more about Rocky Anderson and Justice Party on Wikipedia.

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  • SQL SERVER – Configuring Interactive Cleansing Suggestion Min Score for Suggestions in Data Quality Services (DQS) – Sensitivity of Suggestion

    - by pinaldave
    Earlier I talked about what kind of questions, I do not like when I get asked. Today we will go over the question which I like when I get asked the same. One of the reader practices various steps in my earlier blog post Step by Step Guide to Beginning Data Quality Services in SQL Server 2012 – Introduction to DQS. While reading the blog post he noticed that Data Quality Services is not providing very helpful suggestions. He wrote an email to me about it. Let us go over his email. “Pinal, I noticed in one of your images that DQS is not providing very helpful suggestions. First of all DQS should be able to make intelligent guesses and make the necessary correction by itself. If it cannot do the same, in that case, it should give us intelligent suggestions but in the image included here, I see the suggestions are not there as well. Why is it so? Would you please tell me how to increase the numbers of suggestion? I do understand this may not be preferable solution in many case but all the business cases go on it depends. There are cases when the high sensitivity required and there are cases when higher sensitivities are not required. I would like to seek your help here. –Sriram MD” This is indeed a great question. I see that Sriram understands that every system is different and every application has a different need. I will not have to tell him this most important concept. The question is about how to change the sensitivity of suggestions for correction in DQS. Well, this option is available under the configuration tab in the DQS client. Once you click on Configuration you will see the following screen. Click the Tab of General Settings. You will see the section of Interactive Cleansing. Under this second there is the first option of “Min score for suggestions”. As this is set to 0.7 every suggestion which matches 0.7 probabilities or higher probability are displayed under the suggestion tab. You can see in the following image that there is no suggestion as the min score for suggestions is set to 0.7 and there is no record which qualifies to that much confidence. Now let us change the value of Min Score for suggestion to 0.5. The lower value increased the confidence of DQS to give further suggestion to values which are over 0.5. However, in our case the suggestions which it provides are also accurate. This may not be true for your sample. Every sample is different so you should manually review it before approving them. I guess, this is a simple blog post to demonstrate how to change the confidence value for the suggestions which Data Quality Services provides. Use this feature with care and always tune it according to your datasets and record diversity. Reference: Pinal Dave (http://blog.SQLAuthority.com)       Filed under: PostADay, SQL, SQL Authority, SQL Query, SQL Server, SQL Tips and Tricks, T SQL, Technology Tagged: Data Quality Services, DQS

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  • saving and retrieving a text file in java?

    - by user3319432
    import java.sql. ; import java.awt.; import javax.swing.; import java.awt.event.; public class saving extends JFrame implements ActionListener{ JTextField edpno=new JTextField(10); JLabel l0= new JLabel ("EDP Number: "); JComboBox fname = new JComboBox(); JLabel l1= new JLabel("First Name: "); JTextField lname= new JTextField(20); JLabel l2= new JLabel("Last Name: "); // JTextField contno= new JTextField(20); // JLabel l3= new JLabel("Contact Number: "); JComboBox contno = new JComboBox(); JLabel l3 = new JLabel ("Contact Number: "); JButton bOK = new JButton("Save"); JButton bRetrieve = new JButton("Retrieve"); private ImageIcon icon; JPanel C=new JPanel(){ protected void paintComponent(Graphics g){ g.drawImage(icon.getImage(),0,0,null); super.paintComponent(g); } }; public Search Record (){ icon=new ImageIcon("images/canres.png"); C.setOpaque(false); C.setLayout(new GridLayout(5,2,4,4)); setTitle("Search Record"); C.add (l0); C.add (edpno); edpno.addActionListener(this); C.add (l1); C.add (fname); fname.setForeground(Color.BLUE); fname.setFont(new Font(" ", Font.BOLD,15)); C.add (l2); C.add (lname); C.add (l3); C.add (contno); contno.setForeground(Color.BLUE); contno.setFont(new Font(" ", Font.BOLD,15)); C.add(bOK); bOK.addActionListener(this); C.add (bRetrieve); bRetrieve.addActionListener(this); bOK.setBackground(Color.white); bRetrieve.setBackground(Color.white); } public void saverecord(){ try{ //Connect to the Database Class.forName("sun.jdbc.odbc.JdbcOdbcDriver"); String path ="jdbc:odbc:;DRIVER=Microsoft Access Driver (*.mdb);DBQ=Database/roomassign.mdb"; String DBPassword =""; String DBUserName =""; Connection con = DriverManager.getConnection(path,"",""); Statement s = con.createStatement(); s.executeQuery("select firstname, Lastname, contact number from name WHERE edpno ='"+edpno.getText()+"'"); ResultSet rs = s.getResultSet(); ResultSetMetaData md = rs.getMetaData(); while(rs.next()) { fname.setSelectedItem(rs.getString(1)); lname.setText(rs.getString(2)); contno.setSelectedItem(rs.getString(3)); // crs.setSelectedItem(rs.getString(4)); } s.close(); con.close(); } catch(Exception Q) { JOptionPane.showMessageDialog(this,Q); } } public void SaveRecord(){ try{ Class.forName("sun.jdbc.odbc.JdbcOdbcDriver"); String path = "jdbc:odbc:;DRIVER=Microsoft Access Driver (*.mdb);DBQ=Database/roomassign.mdb"; String DBPassword =""; String DBUsername =""; Connection con = DriverManager.getConnection(path,"",""); Statement s = con.createStatement(); String sql = "UPDATE rooms SET Firstname='"+fname.getSelectedItem()+"',Lastname='"+lname.getText()+"',Contactnumber='"+contno.getSelectedItem()+"' WHERE '"+edpno.getText()+"'=edpno"; s.executeUpdate(sql); JOptionPane.showMessageDialog(this,"New room Record has been successfully saved"); dispose(); s.close(); con.close(); } catch(Exception Mismatch){ JOptionPane.showMessageDialog(this,Mismatch); } } public void actionPerformed (ActionEvent ako){ if (ako.getSource() == bRetrieve){ dispose(); } else if (ako.getSource() == bOK){ SaveRecord(); } } public static void main (String [] awtsave){ new Search(); } }

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  • Get to Know a Candidate (3 of 25): Virgil Goode&ndash;Constitution Party

    - by Brian Lanham
    DISCLAIMER: This is not a post about “Romney” or “Obama”. This is not a post for whom I am voting. Information sourced for Wikipedia. Meet Virgil Goode of the Constitution Party Goode was served as a Republican member of the United States House of Representatives from 1997 to 2009. He represented the 5th congressional district of Virginia. Goode was born in Richmond, Virginia, the son of Alice Clara (née Besecker) and Virgil Hamlin Goode. He has spent most of his life in Rocky Mount. Goode graduated with a B.A. from the University of Richmond (Phi Beta Kappa) and with a J.D. from the University of Virginia School of Law. He also is a member of Lambda Chi Alpha Fraternity and served in the Army National Guard from 1969 to 1975. Goode grew up as a Democrat. He entered politics soon after graduating from law school. At the age of 27, he won a special election to the state Senate from a Southside district as an independent after the death of the Democratic incumbent. One of his major campaign focuses at the time was advocacy for the Equal Rights Amendment. Soon after being elected, he joined the Democrats. Goode wore his party ties very loosely. He became famous for his support of the tobacco industry, expressing his fear that "his elderly mother would be denied 'the one last pleasure' of smoking a cigarette on her hospital deathbed." He was an ardent defender of gun rights while being an enthusiastic supporter of L. Douglas Wilder, who later became the first elected black governor in the history of the United States. At the Democratic Party's state political convention in 1985, Goode nominated Wilder for lieutenant governor. However, while governor, Wilder cracked down on the sale of guns in the state. After the 1995 elections resulted in a 20–20 split between Democrats and Republicans in the State Senate, Goode seriously considered voting with the Republicans on organizing the chamber. Had he done so, the State Senate would have been under Republican control for the first time since Reconstruction (the Republicans ultimately won control outright in 1999). Goode's actions at the time "forced his party to share power with Republican lawmakers in the state legislature," which further upset the Democratic Party. Goode is on the ballot in CA, FL, ID, IO, LA, MI, MN, MS, MI, NJ, NM, NY, NV, ND, OH, SC, SD, TN, UT, VA, WA, WI, WY.  He is a write-in candidate in CA, CT, DC, GA, IL, IN, ME, MD, MA, MO, NC, TX, VT, WV Constitution Party This party was founded as the “U.S. Taxpayers’ Party” and considers itself conservative. The party's platform is predicated on the principles of the nation's founding documents. The party puts a large focus on immigration, calling for stricter penalties towards illegal immigrants and a moratorium on legal immigration until all federal subsidies to immigrants are discontinued.The party absorbed the American Independent Party, originally founded for George Wallace's 1968 presidential campaign. The American Independent Party of California has been an affiliate of the Constitution Party since its founding; however, current party leadership is disputed and the issue is in court to resolve this conflict. The Constitution Party has some substantial support from the Christian Right and in 2010 achieved major party status in Colorado. Learn more about Virgil Goode and Constitution Party on Wikipedia.

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  • Using M2Crypto to save and load X509 certs in pem files

    - by Brock Pytlik
    I would expect that if I have a X509 cert as an object in memory, saved it as a pem file, then loaded it back in, I would end up with the same cert I started with. This seems not to be the case however. Let's call the original cert A, and the cert loaded from the pem file B. A.as_text() is identical to B.as_text(), but A.as_pem() differs from B.as_pem(). To say the least, I'm confused by this. As a side note, if A has been signed by another entity C, then A will verify against C's cert, but B will not. I've put together a tiny sample program to demonstrate what I'm seeing. When I run this, the second RuntimeError is raised. Thanks, Brock #!/usr/bin/python2.6 import M2Crypto as m2 import time cur_time = m2.ASN1.ASN1_UTCTIME() cur_time.set_time(int(time.time()) - 60*60*24) expire_time = m2.ASN1.ASN1_UTCTIME() # Expire certs in 1 hour. expire_time.set_time(int(time.time()) + 60 * 60 * 24) cs_rsa = m2.RSA.gen_key(1024, 65537, lambda: None) cs_pk = m2.EVP.PKey() cs_pk.assign_rsa(cs_rsa) cs_cert = m2.X509.X509() # These two seem the minimum necessary to make the as_text function call work # at all cs_cert.set_not_before(cur_time) cs_cert.set_not_after(expire_time) # This seems necessary to fill out the complete cert without errors. cs_cert.set_pubkey(cs_pk) # I've tried with the following set lines commented out and not commented. cs_name = m2.X509.X509_Name() cs_name.C = "US" cs_name.ST = "CA" cs_name.OU = "Fake Org CA 1" cs_name.CN = "www.fakeorg.dex" cs_name.Email = "[email protected]" cs_cert.set_subject(cs_name) cs_cert.set_issuer_name(cs_name) cs_cert.sign(cs_pk, md="sha256") orig_text = cs_cert.as_text() orig_pem = cs_cert.as_pem() print "orig_text:\n%s" % orig_text cs_cert.save_pem("/tmp/foo") tcs = m2.X509.load_cert("/tmp/foo") tcs_text = tcs.as_text() tcs_pem = tcs.as_pem() if orig_text != tcs_text: raise RuntimeError( "Texts were different.\nOrig:\n%s\nAfter load:\n%s" % (orig_text, tcs_text)) if orig_pem != tcs_pem: raise RuntimeError( "Pems were different.\nOrig:\n%s\nAfter load:\n%s" % (orig_pem, tcs_pem))

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  • How to break WinDbg in an anonymous method?

    - by Richard Berg
    Title kinda says it all. The usual SOS command !bpmd doesn't do a lot of good without a name. Some ideas I had: dump every method, then use !bpmd -md when you find the corresponding MethodDesc not practical in real world usage, from what I can tell. Even if I wrote a macro to limit the dump to anonymous types/methods, there's no obvious way to tell them apart. use Reflector to dump the MSIL name doesn't help when dealing with dynamic assemblies and/or Reflection.Emit. Visual Studio's inability to read local vars inside such scenarios is the whole reason I turned to Windbg in the first place... set the breakpoint in VS, wait for it to hit, then change to Windbg using the noninvasive trick attempting to detach from VS causes it to hang (along with the app). I think this is due to the fact that the managed debugger is a "soft" debugger via thread injection instead of a standard "hard" debugger. Or maybe it's just a VS bug specific to Silverlight (would hardly be the first I've encountered). set a breakpoint on some other location known to call into the anonymous method, then single-step your way in my backup plan, though I'd rather not resort to it if this Q&A reveals a better way

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  • jstl taglib not found, where have I gone wrong?

    - by James.Elsey
    I'm trying to add Google Maps onto my JSPs by using the googlemaps jstl taglib. I've added this into my maven pom <dependency> <groupId>com.lamatek</groupId> <artifactId>googlemaps</artifactId> <version>0.98c</version> <scope>provided<>/scope </dependency> This then included the googlemaps-0.98c library under my project libraries in NetBeans, I right clicked and selected Manually install artifact and located the googlemaps.jar file I had downloaded. I've then added this into my taglibs file <%@taglib prefix="googlemaps" uri="/WEB-INF/googlemaps" %> And have then included this where I actually want to show a map on my jsp <googlemaps:map id="map" width="250" height="300" version="2" type="STREET" zoom="12"> <googlemaps:key domain="localhost" key="xxxx"/> <googlemaps:point id="point1" address="74 Connors Lane" city="Elkton" state="MD" zipcode="21921" country="US"/> <googlemaps:marker id="marker1" point="point1"/> </googlemaps:map> But when I load up my application, I get the following error. org.apache.jasper.JasperException: /jsp/dashboard.jsp(1,1) /jsp/common/taglibs.jsp(6,56) PWC6117: File "/WEB-INF/googlemaps" not found root cause org.apache.jasper.JasperException: /jsp/common/taglibs.jsp(6,56) PWC6117: File "/WEB-INF/googlemaps" not found Have I missed something simple? I'm unable to spot what I've done wrong so far.. Thanks

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