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  • How can I draw a log-normalized imshow plot with a colorbar representing the raw data in matplotlib

    - by Adam Fraser
    I'm using matplotlib to plot log-normalized images but I would like the original raw image data to be represented in the colorbar rather than the [0-1] interval. I get the feeling there's a more matplotlib'y way of doing this by using some sort of normalization object and not transforming the data beforehand... in any case, there could be negative values in the raw image. import matplotlib.pyplot as plt import numpy as np def log_transform(im): '''returns log(image) scaled to the interval [0,1]''' try: (min, max) = (im[im > 0].min(), im.max()) if (max > min) and (max > 0): return (np.log(im.clip(min, max)) - np.log(min)) / (np.log(max) - np.log(min)) except: pass return im a = np.ones((100,100)) for i in range(100): a[i] = i f = plt.figure() ax = f.add_subplot(111) res = ax.imshow(log_transform(a)) # the colorbar drawn shows [0-1], but I want to see [0-99] cb = f.colorbar(res) I've tried using cb.set_array, but that didn't appear to do anything, and cb.set_clim, but that rescales the colors completely. Thanks in advance for any help :)

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  • Dynamically setting the queryset of a ModelMultipleChoiceField to a custom recordset

    - by Daniel Quinn
    I've seen all the howtos about how you can set a ModelMultipleChoiceField to use a custom queryset and I've tried them and they work. However, they all use the same paradigm: the queryset is just a filtered list of the same objects. In my case, I'm trying to get the admin to draw a multiselect form that instead of using usernames as the text portion of the , I'd like to use the name field from my account class. Here's a breakdown of what I've got: # models.py class Account(models.Model): name = models.CharField(max_length=128,help_text="A display name that people understand") user = models.ForeignKey(User, unique=True) # Tied to the User class in settings.py class Organisation(models.Model): administrators = models.ManyToManyField(User) # admin.py from django.forms import ModelMultipleChoiceField from django.contrib.auth.models import User class OrganisationAdminForm(forms.ModelForm): def __init__(self, *args, **kwargs): from ethico.accounts.models import Account self.base_fields["administrators"] = ModelMultipleChoiceField( queryset=User.objects.all(), required=False ) super(OrganisationAdminForm, self).__init__(*args, **kwargs) class Meta: model = Organisation This works, however, I want queryset above to draw a selectbox with the Account.name property and the User.id property. This didn't work: queryset=Account.objects.all().order_by("name").values_list("user","name") It failed with this error: 'tuple' object has no attribute 'pk' I figured that this would be easy, but it's turned into hours of dead-ends. Anyone care to shed some light?

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  • Getting unpredictable data into a tabular format

    - by Acorn
    The situation: Each page I scrape has <input> elements with a title= and a value= I don't know what is going to be on the page. I want to have all my collected data in a single table at the end, with a column for each title. So basically, I need each row of data to line up with all the others, and if a row doesn't have a certain element, then it should be blank (but there must be something there to keep the alignment). eg. First page has: {animal: cat, colour: blue, fruit: lemon, day: monday} Second page has: {animal: fish, colour: green, day: saturday} Third page has: {animal: dog, number: 10, colour: yellow, fruit: mango, day: tuesday} Then my resulting table should be: animal | number | colour | fruit | day cat | none | blue | lemon | monday fish | none | green | none | saturday dog | 10 | yellow | mango | tuesday Although it would be good to keep the order of the title value pairs, which I know dictionaries wont do. So basically, I need to generate columns from all the titles (kept in order but somehow merged together) What would be the best way of going about this without knowing all the possible titles and explicitly specifying an order for the values to be put in?

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  • Why wont numpy matrix let me print its rows?

    - by uberjumper
    Okay this is probably a really dumb question, however its really starting to hurt. I have a numpy matrix, and basically i print it out row by row. However i want to make each row be formatted and separated properly. >>> arr = numpy.matrix([[x for x in range(5)] for y in range(5)]) >>> arr matrix([[0, 1, 2, 3, 4], [0, 1, 2, 3, 4], [0, 1, 2, 3, 4], [0, 1, 2, 3, 4], [0, 1, 2, 3, 4]]) Lets say i want to print the first row, and add a '|' between each element: >>> '|'.join(map(str, arr[0,])) '[[0 1 2 3 4]]' Err... >>> '|'.join(map(lambda x: str(x[0]), arr[0])) '[[0 1 2 3 4]]' I am really confused by this behavior why does it do this?

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  • How to build a Django form which requires a delay to be re-submitted ?

    - by pierre-guillaume-degans
    Hey, In order to avoid spamming, I would like to add a waiting time to re-submit a form (i.e. the user should wait a few seconds to submit the form, except the first time that this form is submitted). To do that, I added a timestamp to my form (and a security_hash field containing the timestamp plus the settings.SECRET_KEY which ensures that the timestamp is not fiddled with). This look like: class MyForm(forms.Form): timestamp = forms.IntegerField(widget=forms.HiddenInput) security_hash = forms.CharField(min_length=40, max_length=40, widget=forms.HiddenInput) # + some other fields.. # + methods to build the hash and to clean the timestamp... # (it is based on django.contrib.comments.forms.CommentSecurityForm) def clean_timestamp(self): """Make sure the delay is over (5 seconds).""" ts = self.cleaned_data["timestamp"] if not time.time() - ts > 5: raise forms.ValidationError("Timestamp check failed") return ts # etc... This works fine. However there is still an issue: the timestamp is checked the first time the form is submitted by the user, and I need to avoid this. Any idea to fix it ? Thank you ! :-)

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  • I am currently serving my static files in Django. How do I use Apache2 to do this?

    - by alex
    (r'^media/(?P<path>.*)$', 'django.views.static.serve',{'document_root': settings.MEDIA_ROOT}), As you can see, I have a directory called "media" under my Django project. I would like to delete this line in my urls.py and instead us Apache to serve my static files. What do I do to my Apache configs (which files do I change) in order to do this? By the way, I installed Apache2 like normal: sudo aptitude install apache2

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  • twisted reactor stops too early

    - by pygabriel
    I'm doing a batch script to connect to a tcp server and then exiting. My problem is that I can't stop the reactor, for example: cmd = raw_input("Command: ") # custom factory, the protocol just send a line reactor.connectTCP(HOST,PORT, CommandClientFactory(cmd) d = defer.Deferred() d.addCallback(lambda x: reactor.stop()) reactor.callWhenRunning(d.callback,None) reactor.run() In this code the reactor stops before that the tcp connection is done and the cmd is passed. How can I stop the reactor after that all the operation are finished?

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  • Help calling class from a class above.

    - by wtzolt
    Hello, How to call from class oneThread: back to class fun:? As in, address a class written below. Is it possible? class oneThread(threading.Thread): def __init__(self): threading.Thread.__init__(self) self.start() def run(self): print "1" time.sleep(1) print "2" time.sleep(1) print "3" self.wTree.get_widget("entryResult").set_text("Done with One.") # How to call from here back to class fun, which of course is below...? class fun: wTree = None def __init__( self ): self.wTree = gtk.glade.XML( "main.glade" ) self.wTree.signal_autoconnect( {"on_buttonOne" : self.one} ) gtk.main() def one(self, widget): oneThread(); gtk.gdk.threads_init() do=fun()

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  • Scrapy Not Returning Additonal Info from Scraped Link in Item via Request Callback

    - by zoonosis
    Basically the code below scrapes the first 5 items of a table. One of the fields is another href and clicking on that href provides more info which I want to collect and add to the original item. So parse is supposed to pass the semi populated item to parse_next_page which then scrapes the next bit and should return the completed item back to parse Running the code below only returns the info collected in parse If I change the return items to return request I get a completed item with all 3 "things" but I only get 1 of the rows, not all 5. Im sure its something simple, I just can't see it. class ThingSpider(BaseSpider): name = "thing" allowed_domains = ["somepage.com"] start_urls = [ "http://www.somepage.com" ] def parse(self, response): hxs = HtmlXPathSelector(response) items = [] for x in range (1,6): item = ScrapyItem() str_selector = '//tr[@name="row{0}"]'.format(x) item['thing1'] = hxs.select(str_selector")]/a/text()').extract() item['thing2'] = hxs.select(str_selector")]/a/@href').extract() print 'hello' request = Request("www.nextpage.com", callback=self.parse_next_page,meta={'item':item}) print 'hello2' request.meta['item'] = item items.append(item) return items def parse_next_page(self, response): print 'stuff' hxs = HtmlXPathSelector(response) item = response.meta['item'] item['thing3'] = hxs.select('//div/ul/li[1]/span[2]/text()').extract() return item

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  • simplejson double escapes data causing invalid JSON string

    - by mike_hornbeck
    I have a simple form for managing manufacturers in my shop. After posting form, ajax call returns json with updated data to the form. Problem is, that the returned string is invalid. It looks like it was double-escaped. Strangely similar approach across the whole shop works without any problems. I'm also using jquery 1.6 as javascript framework. Model contains of 3 fields : char for name, text for description and image field for manufacturer logo. The function : def update_data(request, manufacturer_id): """Updates data of manufacturer with given manufacturer id. """ manufacturer = Manufacturer.objects.get(pk=manufacturer_id) form = ManufacturerDataForm(request.FILES, request.POST, instance=manufacturer) if form.is_valid(): form.save() msg = _(u"Manufacturer data has been saved.") html = [ ["#data", manufacturer_data_inline(request, manufacturer_id, form)], ["#selectable-factories-inline", selectable_manufacturers_inline(request, manufacturer_id)], ] result = simplejson.dumps({ "html": html }, cls=LazyEncoder) return HttpResponse(result) The error in console : error with invalid JSON : uncaught exception: Invalid JSON: {"html": [["#data", "\n<h2>Dane</h2>\n<div class="\&quot;manufacturer-image\&quot;">\n \n</div>\n<form action="\&quot;/manage/update-manufacturer-data/1\&quot;" method="\&quot;post\&quot;">\n \n <div class="\&quot;field\&quot;">\n <div class="\&quot;label\&quot;">\n <label for="\&quot;id_name\&quot;">Nazwa</label>:\n </div>\n \n \n <div class="\&quot;error\&quot;">\n <input id="\&quot;id_name\&quot;" name="\&quot;name\&quot;" maxlength="\&quot;50\&quot;" type="\&quot;text\&quot;">\n <ul class="\&quot;errorlist\&quot;"><li>Pole wymagane</li></ul>\n </div>\n \n </div>\n\n <div class="\&quot;field\&quot;">\n <div class="\&quot;label\&quot;">\n <label for="\&quot;id_image\&quot;">Zdjecie</label>:\n </div>\n \n \n <div>\n <input name="\&quot;image\&quot;" id="\&quot;id_image\&quot;" type="\&quot;file\&quot;">\n </div>\n \n </div>\n\n <div class="\&quot;field\&quot;">\n <div class="\&quot;label\&quot;">\n <label for="\&quot;id_description\&quot;">Opis</label>:\n </div>\n \n \n <div>\n <textarea id="\&quot;id_description\&quot;" rows="\&quot;10\&quot;" cols="\&quot;40\&quot;" name="\&quot;description\&quot;"></textarea>\n </div>\n \n </div>\n \n <div class="\&quot;buttons\&quot;">\n <input class="\&quot;ajax-save-button" button\"="" type="\&quot;submit\&quot;">\n </div>\n</form>"], ["#selectable-factories-inline", "\n <div>\n <a class="\&quot;selectable" selected\"\n="" href="%5C%22/manage/manufacturer/1%5C%22">\n L1\n </a>\n </div>\n\n <div>\n <a class="\&quot;selectable" \"\n="" href="%5C%22/manage/manufacturer/4%5C%22">\n KR3W\n </a>\n </div>\n\n <div>\n <a class="\&quot;selectable" \"\n="" href="%5C%22/manage/manufacturer/3%5C%22">\n L1TA\n </a>\n </div>\n\n"]]} Any ideas ?

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  • Most efficient way to update attribute of one instance

    - by Begbie00
    Hi all - I'm creating an arbitrary number of instances (using for loops and ranges). At some event in the future, I need to change an attribute for only one of the instances. What's the best way to do this? Right now, I'm doing the following: 1) Manage the instances in a list. 2) Iterate through the list to find a key value. 3) Once I find the right object within the list (i.e. key value = value I'm looking for), change whatever attribute I need to change. for Instance within ListofInstances: if Instance.KeyValue == SearchValue: Instance.AttributeToChange = 10 This feels really inefficient: I'm basically iterating over the entire list of instances, even through I only need to change an attribute in one of them. Should I be storing the Instance references in a structure more suitable for random access (e.g. dictionary with KeyValue as the dictionary key?) Is a dictionary any more efficient in this case? Should I be using something else? Thanks, Mike

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  • verbose_name for a model's method

    - by mawimawi
    How can I set a verbose_name for a model's method, so that it might be displayed in the admin's change_view form? example: class Article(models.Model): title = models.CharField(max_length=64) created_date = models.DateTimeField(....) def created_weekday(self): return self.created_date.strftime("%A") in admin.py: class ArticleAdmin(admin.ModelAdmin): readonly_fields = ('created_weekday',) fields = ('title', 'created_weekday') Now the label for created_weekday is "Created Weekday", but I'd like it to have a different label which should be i18nable using ugettext_lazy as well. I've tried created_weekday.verbose_name=... after the method, but that did not show any result. Is there a decorator or something I can use, so I could make my own "verbose_name" / "label" / whateverthename is?

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  • PyParsing: Not all tokens passed to setParseAction()

    - by Rosarch
    I'm parsing sentences like "CS 2110 or INFO 3300". I would like to output a format like: [[("CS" 2110)], [("INFO", 3300)]] To do this, I thought I could use setParseAction(). However, the print statements in statementParse() suggest that only the last tokens are actually passed: >>> statement.parseString("CS 2110 or INFO 3300") Match [{Suppress:("or") Re:('[A-Z]{2,}') Re:('[0-9]{4}')}] at loc 7(1,8) string CS 2110 or INFO 3300 loc: 7 tokens: ['INFO', 3300] Matched [{Suppress:("or") Re:('[A-Z]{2,}') Re:('[0-9]{4}')}] -> ['INFO', 3300] (['CS', 2110, 'INFO', 3300], {'Course': [(2110, 1), (3300, 3)], 'DeptCode': [('CS', 0), ('INFO', 2)]}) I expected all the tokens to be passed, but it's only ['INFO', 3300]. Am I doing something wrong? Or is there another way that I can produce the desired output? Here is the pyparsing code: from pyparsing import * def statementParse(str, location, tokens): print "string %s" % str print "loc: %s " % location print "tokens: %s" % tokens DEPT_CODE = Regex(r'[A-Z]{2,}').setResultsName("DeptCode") COURSE_NUMBER = Regex(r'[0-9]{4}').setResultsName("CourseNumber") OR_CONJ = Suppress("or") COURSE_NUMBER.setParseAction(lambda s, l, toks : int(toks[0])) course = DEPT_CODE + COURSE_NUMBER.setResultsName("Course") statement = course + Optional(OR_CONJ + course).setParseAction(statementParse).setDebug()

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  • Search for a String and replace it with a variable

    - by chrissygormley
    Hello, I am trying to use regular expression to search a document fo a UUID number and replace the end of it with a new number. The code I have so far is: read_file = open('test.txt', 'r+') write_file = open('test.txt', 'w') r = re.compile(r'(self.uid\s*=\s*5EFF837F-EFC2-4c32-A3D4\s*)(\S+)') for l in read_file: m1 = r.match(l) if m1: new=(str,m1.group(2)) new?????? This where I get stuck. The file test.txt has the below UUID stored in it: self.uid = '5EFF837F-EFC2-4c32-A3D4-D15C7F9E1F22' I want to replace the part D15C7F9E1F22. I have also tried this: r = re.compile(r'(self.uid\s*=\s*)(\S+)') for l in fp: m1 = r.match(l) new=map(int,m1.group(2).split("-") new[4]='RHUI5345JO' But I cannot seem to match the string. Thanks in advance for any help.

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  • How small is *too small* for an opensource project?

    - by Adam Lewis
    I have a fair number of smaller projects / libraries that I have been using over the past 2 years. I am thinking about moving them to Google Code to make it easier to share with co-workers and easier to import them into new projects on my own environments. The are things like a simple FSMs, CAN (Controller Area Network) drivers, and GPIB drivers. Most of them are small (less than 500 lines), so it makes me wonder are these types of things too small for a stand alone open-source project? Note that I would like to make it opensource because it does not give me, or my company, any real advantage.

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  • How can I lookup an attribute in any scope by name?

    - by Wai Yip Tung
    How can I lookup an attribute in any scope by name? My first trial is to use globals() and locals(). e.g. >>> def foo(name): ... a=1 ... print globals().get(name), locals().get(name) ... >>> foo('a') None 1 >>> b=1 >>> foo('b') 1 None >>> foo('foo') <function foo at 0x014744B0> None So far so good. However it fails to lookup any built-in names. >>> range <built-in function range> >>> foo('range') None None >>> int <type 'int'> >>> foo('int') None None Any idea on how to lookup built-in attributes?

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