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  • pyplot: really slow creating heatmaps

    - by cvondrick
    I have a loop that executes the body about 200 times. In each loop iteration, it does a sophisticated calculation, and then as debugging, I wish to produce a heatmap of a NxM matrix. But, generating this heatmap is unbearably slow and significantly slow downs an already slow algorithm. My code is along the lines: import numpy import matplotlib.pyplot as plt for i in range(200): matrix = complex_calculation() plt.set_cmap("gray") plt.imshow(matrix) plt.savefig("frame{0}.png".format(i)) The matrix, from numpy, is not huge --- 300 x 600 of doubles. Even if I do not save the figure and instead update an on-screen plot, it's even slower. Surely I must be abusing pyplot. (Matlab can do this, no problem.) How do I speed this up?

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  • Geocoding non-addresses: Geopy

    - by Phil Donovan
    Using geopy to geocode alcohol outlets in NZ. The problem I have is that some places do not have street addresses but are places in Google Maps. For example, plugging: Furneaux Lodge, Endeavour Inlet, Queen Charlotte Sound, Marlborough 7250 into Google Maps via the browser GUI gives me However, using that in Geopy I get a GQueryError saying this geographic location does not exist. Here is the code for geocoding: def GeoCode(address): g=geocoders.Google(domain="maps.google.co.nz") geoloc = g.geocode(address, exactly_one=False) place, (lat, lng) = geoloc[0] GeoOut = [] GeoOut.extend([place, lat, lng]) return GeoOut GeoCode("Furneaux Lodge, Endeavour Inlet, Queen Charlotte Sound, Marlboroguh 7250") Meanwhile, I notice that "Eiffel Tower" works fine. Is there away to solve this and can someone explain the difference between The Eiffel Tower and Furneaux Lodge within Google 'locations'?

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  • Scrapy - Follow RSS links

    - by Tupak Goliam
    Hello, I was wondering if anyone ever tried to extract/follow RSS links using SgmlLinkExtractor/CrawlSpider. I can't get it to work... I am using the following rule: rules = ( Rule(SgmlLinkExtractor(tags=('link',), attrs=False), follow=True, callback='parse_article'), ) (having in mind that rss links are located in the link tag). I am not sure how to tell SgmlLinkExtractor to extract the text() of the link and not to search the attributes ... Any help is welcome, Thanks in advance

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  • How to get the original variable name of variable passed to a function

    - by Acorn
    Is it possible to get the original variable name of a variable passed to a function? E.g. foobar = "foo" def func(var): print var.origname So that: func(foobar) Returns: >>foobar EDIT: All I was trying to do was make a function like: def log(soup): f = open(varname+'.html', 'w') print >>f, soup.prettify() f.close() .. and have the function generate the filename from the name of the variable passed to it. I suppose if it's not possible I'll just have to pass the variable and the variable's name as a string each time.

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  • Which software for intranet CMS - Django or Joomla?

    - by zalun
    In my company we are thinking of moving from wiki style intranet to a more bespoke CMS solution. Natural choice would be Joomla, but we have a specific architecture. There is a few hundred people who will use the system. System should be self explainable (easier than wiki). We use a lot of tools web, applications and integrated within 3rd party software. The superior element which is a glue for all of them is API. In example for the intranet tools we do use Django, but it's used without ORM, kind of limited to templates and url - every application has an adequate methods within our API. We do not use the Django admin interface, because it is hardly dependent on ORM. Because of that Joomla may be hard to integrate. Every employee should be able to edit most of the pages, authentication and privileges have to be managed by our API. How hard is it to plug Joomla to use a different authentication process? (extension only - no hacks) If one knows Django better than Joomla, should Django be used?

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  • pylab.savefig() and pylab.show() image difference

    - by Jack1990
    I'm making an script to automatically create plots from .xvg files, but there's a problem when I'm trying to use pylab's savefig() method. Using pylab.show() and saving from there, everything's fine. Using pylab.show() Using pylab.savefig() def producePlot(timestep, energy_values,type_line = 'r', jump = 1,finish = 100): fc = sp.interp1d(timestep[::jump], energy_values[::jump],kind='cubic') xnew = numpy.linspace(0, finish, finish*2) pylab.plot(xnew, fc(xnew),type_line) pylab.xlabel('Time in ps ') pylab.ylabel('kJ/mol') pylab.xlim(xmin=0, xmax=finish) def produceSimplePlot(timestep, energy_values,type_line = 'r', jump = 1,finish = 100): pylab.plot(timestep, energy_values,type_line) pylab.xlabel('Time in ps ') pylab.ylabel('kJ/mol') pylab.xlim(xmin=0, xmax=finish) def linearRegression(timestep, energy_values, type_line = 'g'): #, jump = 1,finish = 100): from scipy import stats import numpy #print 'fuck' timestep = numpy.asarray(timestep) slope, intercept, r_value, p_value, std_err = stats.linregress(timestep,energy_values) line = slope*timestep+intercept pylab.plot(timestep, line, type_line) def plottingTime(Title,file_name, timestep, energy_values ,loc, jump , finish): pylab.title(Title) producePlot(timestep,energy_values, 'b',jump, finish) linearRegression(timestep,energy_values) import numpy Average = numpy.average(energy_values) #print Average pylab.legend(("Average = %.2f" %(Average),'Linear Reg'),loc) #pylab.show() pylab.savefig('%s.jpg' %file_name[:-4], bbox_inches= None, pad_inches=0) #if __name__ == '__main__': #plottingTime(Title,timestep1, energy_values, jump =10, finish = 4800) def specialCase(Title,file_name, timestep, energy_values,loc, jump, finish): #print 'Working here ...?' pylab.title(Title) producePlot(timestep,energy_values, 'b',jump, finish) import numpy from pylab import * Average = numpy.average(energy_values) #print Average pylab.legend(("Average = %.2g" %(Average), Title),loc) locs,labels = yticks() yticks(locs, map(lambda x: "%.3g" % x, locs)) #pylab.show() pylab.savefig('%s.jpg' %file_name[:-4] , bbox_inches= None, pad_inches=0) Thanks in advance, John

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  • GUI IDE with PyDev Eclipse

    - by gizgok
    I have 2 weeks to finish my final year project.I need a GUI IDE or a GUI framework compatible with PyDev and Eclipse. I cannot spend time learning something cause the functionality is yet to be completed.I'm looking for very simple GUI for a simulation game.

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  • Disable autocomplete on textfield in Django?

    - by tau-neutrino
    Does anyone know how you can turn off autocompletion on a textfield in Django? For example, a form that I generate from my model has an input field for a credit card number. It is bad practice to leave autocompletion on. When making the form by hand, I'd add a autocomplete="off" statement, but how do you do it in Django and still retain the form validation?

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  • Rearranging a sequence

    - by sarah
    I'm have trouble rearranging sequences so the amount of letters in the given original sequence are the same in the random generated sequences. For example: If i have a string 'AAAC' I need that string rearranged randomly so the amount of A's and C's are the same.

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  • Help converting code using httlib2 to use urllib2

    - by ThinkCode
    What am I trying to do? Visit a site, retrieve cookie, visit the next page by sending in the cookie info. It all works but httplib2 is giving me one too many problems with socks proxy on one site. http = httplib2.Http() main_url = 'http://mywebsite.com/get.aspx?id='+ id +'&rows=25' response, content = http.request(main_url, 'GET', headers=headers) main_cookie = response['set-cookie'] referer = 'http://google.com' headers = {'Content-type': 'application/x-www-form-urlencoded', 'Cookie': main_cookie, 'User-Agent' : USER_AGENT, 'Referer' : referer} How to do the same exact thing using urllib2 (cookie retrieving, passing to the next page on the same site)? Thank you.

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  • Remove padding in wxPython's wxWizard

    - by mridang
    Hi Guys, I'm using wxPython to create a wizard using the wxWizard control. I'm trying to a draw a colored rectangle but when I run the app, there seems to be a about a 10px padding on each side of the rectangle. This goes for all other controls too. I have to offset them a bit so that they appear exactly where I want them to. Is there any way I could remove this padding? Here's the source of my base Wizard page. class SimplePage(wx.wizard.PyWizardPage): """ Simple wizard page with unlimited rows of text. """ def __init__(self, parent, title): wx.wizard.PyWizardPage.__init__(self, parent) self.next = self.prev = None #self.sizer = wx.BoxSizer(wx.VERTICAL) title = wx.StaticText(self, -1, title) title.SetFont(wx.Font(18, wx.SWISS, wx.NORMAL, wx.BOLD)) #self.sizer.AddWindow(title, 0, wx.ALIGN_LEFT|wx.ALL, padding) #self.sizer.AddWindow(wx.StaticLine(self, -1), 0, wx.EXPAND|wx.ALL, padding) # self.SetSizer(self.sizer) self.Bind(wx.EVT_PAINT, self.OnPaint) def OnPaint(self, evt): """set up the device context (DC) for painting""" self.dc = wx.PaintDC(self) self.dc.BeginDrawing() self.dc.SetPen(wx.Pen("grey",style=wx.TRANSPARENT)) self.dc.SetBrush(wx.Brush("grey", wx.SOLID)) # set x, y, w, h for rectangle self.dc.DrawRectangle(0,0,500, 500) self.dc.EndDrawing() del self.dc def SetNext(self, next): self.next = next def SetPrev(self, prev): self.prev = prev def GetNext(self): return self.next def GetPrev(self): return self.prev def Activated(self, evt): """ Executed when page is being activated. """ return def Blocked(self, evt): """ Executed when page is about to be switched. Switching can be blocked by returning True. """ return False def Cancel(self, evt): """ Executed when wizard is about to be canceled. Canceling can be blocked by returning False. """ return True Thanks guys.

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  • Matplotlib: plotting discrete values

    - by Arkapravo
    I am trying to plot the following ! from numpy import * from pylab import * import random for x in range(1,500): y = random.randint(1,25000) print(x,y) plot(x,y) show() However, I keep getting a blank graph (?). Just to make sure that the program logic is correct I added the code print(x,y), just the confirm that (x,y) pairs are being generated. (x,y) pairs are being generated, but there is no plot, I keep getting a blank graph. Any help ?

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  • redefine __and__ operator

    - by wiso
    Why I can't redefine the __and__ operator? class Cut(object): def __init__(self, cut): self.cut = cut def __and__(self, other): return Cut("(" + self.cut + ") && (" + other.cut + ")") a = Cut("a>0") b = cut("b>0") c = a and b print c.cut() I want (a>0) && (b>0), but I got b, that the usual behaviour of and

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  • How to set up Atana Studio 3 Themes in Pydev

    - by willy1234x1
    I've installed the Aptana Studio 3 preview and noticed it has support for themes (such as a bespin style or Ruby envy) and I'd love to use the Bespin one in Pydev but so far I've had no luck getting it to work, anyone have a clue as to how to get it to work? Video showing the themes in action.

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  • Best way to get back to using the power of lxml after having to use a regex to find something in an

    - by PyNEwbie
    I am trying to rip some text out of a large number of html documents (numbers in the hundreds of thousands). The documents are really forms but they are prepared by a very large group of different organizations so there is significant variation in how they create the document. For example, the documents are divided into chapters. I might want to extract the contents of Chapter 5 from every document so I can analyze the content of the chapter. Initially I thought this would be easy but it turns out that the authors might use a set of non-nested tables throughout the document to hold the content so that Chapter n could be displayed using td tags inside a table. Or they might use other elements such as p tags H tags, div tags or any other block level element. After trying repeatedly to use lxml to help me identify the beginning and end of each chapter I have determined that it is a lot cleaner to use a regular expression because in every case, no matter what the enclosing html element is the chapter label is always in the form of >Chapter # It is a little more complicated in that there might be some white space or non-breaking space represented in different ways (  or   or just spaces). Nonetheless it was trivial to write a regular expression to identify the beginning of each section. (The beginning of one section is the end of the previous section.) But now I want to use lxml to get the text out. My thought is that I have really no choice but to walk along my string to find the close tag for the element that encloses the text I am using to find the relevant section. That is here is one example where the element holding the Chapter name is a div <div style="DISPLAY: block; MARGIN-LEFT: 0pt; TEXT-INDENT: 0pt; MARGIN-RIGHT: 0pt" align="left"><font style="DISPLAY: inline; FONT-WEIGHT: bold; FONT-SIZE: 10pt; FONT-FAMILY: Times New Roman">Chapter 1.&#160;&#160;&#160;Our Beginnings.</font></div> So I am imagining that I would begin at the location where I found the match for chapter 1 and set up a regular expressions to find the next </div|</td|</p|</h1 . . . So at this point I have identified the type of element holding my chapter heading I can use the same logic to find all of the text that is within that element that is set up a regular expression to help me mark from >Chapter 1.&#160;&#160;&#160;Our Beginnings.< So I have identified where my Chapter 1 begins I can do the same for chapter 2 (which is where Chapter 1 ends) Now I am imagining that I am going to snip the document beginning at the opening of the element that I identified as the element the indicates where chapter 1 begins and ending just before the opening of the element that I identified as the element that indicates where Chapter 2 begins. The string that I have identified will then be fed to lxml to use its power to get the content. I am going to all of this trouble because I have read over and over - never use a regular expression to extract content from html documents and I have not hit on a way to be as accurate with lxml to identify the starting and ending locations for the text I want to extract. For example, I can never be certain that the subtitle of Chapter 1 is Our Beginnings it could be Our Red Canary. Let me say that I spent two solid days trying with lxml to be confident that I had the beginning and ending elements and I could only be accurate <60% of the time but a very short regular expression has given me better than 95% success. I have a tendency to make things more complicated than necessary so I am wondering if anyone has seen or solved a similar problems and if they had an approach (not the details mind you) that they would like to offer.

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  • Run shell script using fabric and piping script text to shell's stdin

    - by Peter Lyons
    Is there a way to execute a multi-line shell script by piping it to the remote shell's standard input in fabric? Or must I always write it to the remote filesystem, then run it, then delete it? I like sending to stdin as it avoids the temporary file. If there's no fabric API (and it seems like there is not based on my research), presumably I can just use the ssh module directly. Basically I wish fabric.api.run was not limited to a 1-line command that gets passed to the shell as a command line argument, but instead would take a full multi-line script and write it to the remote shell's standard input.

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  • Trying to set up nested while loops using a boolean switch

    - by thorn100
    First time posting. I'm trying to set up a while loop that will ask the user for the employee name, hours worked and hourly wage until the user enters 'DONE'. Eventually I'll modify the code to calculate the weekly pay and write it to a list, but one thing at a time. The problem is once the main while loop executes once, it just stops. Doesn't error out but just stops. I have to kill the program to get it to stop. I want it to ask the three questions again and again until the user is finished. Thoughts? Please note that this is just an exercise and not meant for any real world application. def getName(): """Asks for the employee's full name""" firstName=raw_input("\nWhat is your first name? ") lastName=raw_input("\nWhat is your last name? ") fullName=firstName.title() + " " + lastName.title() return fullName def getHours(): """Asks for the number of hours the employee worked""" hoursWorked=0 while int(hoursWorked)<1 or int(hoursWorked) > 60: hoursWorked=raw_input("\nHow many hours did the employee work: ") if int(hoursWorked)<1 or int(hoursWorked) > 60: print "Please enter an integer between 1 and 60." else: return hoursWorked def getWage(): """Asks for the employee's hourly wage""" wage=0 while float(wage)<6.00 or float(wage)>20.00: wage=raw_input("\nWhat is the employee's hourly wage: ") if float(wage)<6.00 or float(wage)>20.00: print ("Please enter an hourly wage between $6.00 and $20.00") else: return wage ##sentry variables employeeName="" employeeHours=0 employeeWage=0 booleanDone=False #Enter employee info print "Please enter payroll information for an employee or enter 'DONE' to quit." while booleanDone==False: while employeeName=="": employeeName=getName() if employeeName.lower()=="done": booleanDone=True break print "The employee's name is", employeeName while employeeHours==0: employeeHours=getHours() if employeeHours.lower()=="done": booleanDone=True break print employeeName, "worked", employeeHours, "this week." while employeeWage==0: employeeWage=getWage() if employeeWage.lower()=="done": booleanDone=True break print employeeName + "'s hourly wage is $" + employeeWage

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  • 'NoneType' object has no attribute 'data'

    - by Bill Jordan
    Hello guys, I am sending a SOAP request to my server and getting the response back. sample of the response string is shown below: <?xml version = '1.0' ?> <env:Envelope xmlns:env=http:////www.w3.org/2003/05/soap-envelop . .. .. <env:Body> <epas:get-all-config-resp xmlns:epas="urn:organization:epas:soap"> ^M ... ... <epas:property name="Tom">12</epas:property> > > <epas:property name="Alice">34</epas:property> > > <epas:property name="John">56</epas:property> > > <epas:property name="Danial">78</epas:property> > > <epas:property name="George">90</epas:property> > > <epas:property name="Luise">11</epas:property> ... ^M </env:Body? </env:Envelop> What I noticed in the response is that there is an extra character shown in the body which is "^M". Not sure if this could be the issue. Note the ^M shown! when I tried parsing the string returned from the server to get the names and values using the code sample: elements = minidom.parseString(xmldoc).getElementsByTagName("property") myDict = {} for element in elements: myDict[element.getAttribute('name')] = element.firstChild.data But, I am getting this error: 'NoneType' object has no attribute 'data'. May be its something to do with the "^M" shown on the xml response back! Any ideas/comments would be appreciated, Cheers

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  • How to draw the "trail" in a maze solving application

    - by snow-spur
    Hello i have designed a maze and i want to draw a path between the cells as the 'person' moves from one cell to the next. So each time i move the cell a line is drawn Also i am using the graphics module The graphics module is an object oriented library Im importing from graphics import* from maze import* my circle which is my cell center = Point(15, 15) c = Circle(center, 12) c.setFill('blue') c.setOutline('yellow') c.draw(win) p1 = Point(c.getCenter().getX(), c.getCenter().getY()) this is my loop if mazez.blockedCount(cloc)> 2: mazez.addDecoration(cloc, "grey") mazez[cloc].deadend = True c.move(-25, 0) p2 = Point(getX(), getY()) line = graphics.Line(p1, p2) cloc.col = cloc.col - 1 Now it says getX not defined every time i press a key is this because of p2???

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  • uWSGI with Cherokee: first steps

    - by Steve
    Has anyone tried using uWSGI with Cherokee? Can you share your experiences and what documents you relied upon the most? I am trying to get started from the documentation on both (uWSGI and Cherokee) websites. Nothing works yet. I am using Ubuntu 10.04.

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