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• Libtool versioning of a library that depends on other libraries.

  - by Artyom

  Hello, I have a framework that uses Boost and CgiCC in the core application and in its interface. How should I version the library binary interface (a.k.a. libtool -version-info)? I have no problems tracking the changes in library itself when I make various changes. As it is clear for me how should I version. But... Both Boost and CgiCC libraries do not provide any backward compatible API/ABI and my library may be linked with quite arbitrary versions Boost and CgiCC so I can't provide any promise about the interfaces, so I can't really specify -version-info because even the same library compiled against different versions of Boost and CgiCC would not be compatible. So... What should I do? How should I version library? I know that I should not depend on Boost and CgiCC interfaces in first place, but this is what I get so far for existing stable version. This issue is addressed in next major release but I still have and want to maintain current release as it is very valuable.

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• How do I define a Calculated Measure in MDX based on a Dimension Attribute?

  - by ShaneD

  I would like to create a calculated measure that sums up only a specific subset of records in my fact table based on a dimension attribute. Given: Dimension Date LedgerLineItem {Charge, Payment, Write-Off, Copay, Credit} Measures LedgerAmount Relationships * LedgerLineItem is a degenerate dimension of FactLedger If I break down LedgerAmount by LedgerLineItem.Type I can easily see how much is charged, paid, credit, etc, but when I do not break it down by LedgerLineItem.Type I cannot easily add the credit, paid, credit, etc into a pivot table. I would like to create separate calculated measures that sum only specific type (or multiple types) of ledger facts. An example of the desired output would be: | Year | Charged | Total Paid | Amount - Ledger | | 2008 | $1000 | $600 | -$400 | | 2009 | $2000 | $1500 | -$500 | | Total | $3000 | $2100 | -$900 | I have tried to create the calculated measure a couple of ways and each one works in some circumstances but not in others. Now before anyone says do this in ETL, I have already done it in ETL and it works just fine. What I am trying to do as part of learning to understand MDX better is to figure out how to duplicate what I have done in the ETL in MDX as so far I am unable to do that. Here are two attempts I have made and the problems with them. This works only when ledger type is in the pivot table. It returns the correct amount of the ledger entries (although in this case it is identical to [amount - ledger] but when I try to remove type and just get the sum of all ledger entries it returns unknown. CASE WHEN ([Ledger].[Type].currentMember = [Ledger].[Type].&[Credit]) OR ([Ledger].[Type].currentMember = [Ledger].[Type].&[Paid]) OR ([Ledger].[Type].currentMember = [Ledger].[Type].&[Held Money: Copay]) THEN [Measures].[Amount - ledger] ELSE 0 END This works only when ledger type is not in the pivot table. It always returns the total payment amount, which is incorrect when I am slicing by type as I would only expect to see the credit portion under credit, the paid portion, under paid, $0 under charge, etc. sum({([Ledger].[Type].&[Credit]), ([Ledger].[Type].&[Paid]), ([Ledger].[Type].&[Held Money: Copay])}, [Measures].[Amount - ledger]) Is there any way to make this return the correct numbers regardless of whether Ledger.Type is included in my pivot table or not?

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• ASP MVC.Net 3 RC2 bug ?

  - by Jarek Waliszko

  Hello, so far I've been using ASP.Net 3 BETA. Everything was working fine till the update to RC2 version. Of course I've read ScottGu's article about RC2. My problem is following. Basically I have 2 controllers: public class DynamicPageController : Controller { public ActionResult Redirect(string resource, int? pageNumber, int? id) { } } public class SystemController : Controller { public ActionResult Index() { } } In the Globals.asax I have routes like this: public static void RegisterRoutes(RouteCollection routes) { routes.MapRoute( "SystemRoute", "System/{action}", new { controller = "System", action = "Index" } ); routes.MapRoute( "PageRoute", "{resource}/{id}/{pageNumber}", new { controller = "DynamicPage", action = "Redirect", resource = UrlParameter.Optional, pageNumber = UrlParameter.Optional, id = UrlParameter.Optional } ); } In the code, I have simple link creation: System.Web.Mvc.UrlHelper u = new System.Web.Mvc.UrlHelper(context); string url = u.Action("Index", "System"); and the url is "/my_app/System" in both versions (BETA and RC2) But the code below (the syntax is the same as above, only controller and action names are different): string url = u.Action("Redirect", "DynamicPage", new RouteValueDictionary(new { resource = "Home" })); gives url which is null in RC2. It should be (and in fact in BETA was) "/my_app/Home" Why ? Is it a bug ? How can I create url for my "DynamicPage" controller ? Regards BTW: From where can I now download ASP.Mvc BETA version along with ASP.Net Web Pages 1.0 installers ? Since RC2 announcement I have problems finding mentioned 2 installers. Normally I would upgrade my code but this issue described above makes me stay with BETA for a while, since I have no time for migration and testing everything now.

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• With regards to urllib AttributeError: 'module' object has no attribute 'urlopen'

  - by Matt

  import re import string import shutil import os import os.path import time import datetime import math import urllib from array import array import random filehandle = urllib.urlopen('http://www.google.com/') #open webpage s = filehandle.read() #read print s #display #what i plan to do with it once i get the first part working #results = re.findall('[<td style="font-weight:bold;" nowrap>$][0-9][0-9][0-9][.][0-9][0-9][</td></tr></tfoot></table>]',s) #earnings = '$ ' #for money in results: #earnings = earnings + money[1]+money[2]+money[3]+'.'+money[5]+money[6] #print earnings #raw_input() this is the code that i have so far. now i have looked at all the other forums that give solutions such as the name of the script, which is parse_Money.py, and i have tried doing it with urllib.request.urlopen AND i have tried running it on python 2.5, 2.6, and 2.7. If anybody has any suggestions it would be really welcome, thanks everyone!! --Matt ---EDIT--- I also tried this code and it worked, so im thinking its some kind of syntax error, so if anybody with a sharp eye can point it out, i would be very appreciative. import shutil import os import os.path import time import datetime import math import urllib from array import array import random b = 3 #find URL URL = raw_input('Type the URL you would like to read from[Example: http://www.google.com/] :') while b == 3: #get file name file1 = raw_input('Enter a file name for the downloaded code:') filepath = file1 + '.txt' if os.path.isfile(filepath): print 'File already exists' b = 3 else: print 'Filename accepted' b = 4 file_path = filepath #open file FileWrite = open(file_path, 'a') #acces URL filehandle = urllib.urlopen(URL) #display souce code for lines in filehandle.readlines(): FileWrite.write(lines) print lines print 'The above has been saved in both a text and html file' #close files filehandle.close() FileWrite.close()

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• proper way to dynamically assign backbone.js view el

  - by kikuchiyo

  I would like to create two ( or more ) view instances, each with different el attributes, and have events bound to them via backbone.js view's events hash ( not through jQuery ). Getting events to trigger when all instantiations have the same el is easy: someView = Backbone.View.extend({ el: '#someDiv', events: { 'click': 'someFunction' }, someFunction: function(){ //Do something here } }); So far, if I assign el in the initialize function, and set events normally as follows, events do not trigger: someView = Backbone.View.extend({ events: { 'click': 'someFunction' }, initialize: function( options ){ this.el = options.el }, someFunction: function(){ //Do something here } }); My first instinct was to have el be a function that returns the string representation of the dom element of interest: someView = Backbone.View.extend({ el: function(){ return '#someDiv-' + this.someNumber }, events: { 'click': 'someFunction' }, initialize: function( options ){ this.someNumber = options.someNumber }, someFunction: function(){ //Do something here } }); However, this triggers someFunction x times if I have x instantiations of someView. Next I tried setting both the el and events attributes in initialize: someView = Backbone.View.extend({ initialize: function( options ){ this.el = options.el this.events = { 'click': 'someFunction' } }, someFunction: function(){ //Do something here } }); but this does not trigger events. At this point I'm pretty much fishing. Does anyone know how instantiate a backbone.js view with an el specific to that instance that has events that only trigger for that instance, and not other instances of the View?

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• What's the Matlab equivalent of NULL, when it's calling COM/ActiveX methods?

  - by David M

  Hi, I maintain a program which can be automated via COM. Generally customers use VBS to do their scripting, but we have a couple of customers who use Matlab's ActiveX support and are having trouble calling COM object methods with a NULL parameter. They've asked how they do this in Matlab - and I've been scouring Mathworks' COM/ActiveX documentation for a day or so now and can't figure it out. Their example code might look something like this: function do_something() OurAppInstance = actxserver('Foo.Application'); OurAppInstance.Method('Hello', NULL) end where NULL is where in another language, we'd write NULL or nil or Nothing, or, of course, pass in an object. The problem is this is optional (and these are implemented as optional parameters in most, but not all, cases) - these methods expect to get NULL quite often. They tell me they've tried [] (which from my reading seemed the most likely) as well as '', Nothing, 'Nothing', None, Null, and 0. I have no idea how many of those are even valid Matlab keywords - certainly none work in this case. Can anyone help? What's Matlab's syntax for a null pointer / object for use as a COM method parameter? Update: Thanks for all the replies so far! Unfortunately, none of the answers seem to work, not even libpointer. The error is the same in all cases: Error: Type mismatch, argument 2 This parameter in the COM type library is described in RIDL as: HRESULT _stdcall OurMethod([in] BSTR strParamOne, [in, optional] OurCoClass* oParamTwo, [out, retval] VARIANT_BOOL* bResult); The coclass in question implements a single interface descending from IDispatch.

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• How to persist objects between requests in PHP

  - by SztupY

  I've been using rails, merb, django and asp.net mvc applications in the past. What they have common (that is relevant to the question) is that they have code that sets up the framework. This usually means creating objects and state that is persisted until the web server is recycled (like setting up routing, or checking which controllers are available, etc). As far as I know PHP is more like a CGI script that gets compiled to some bytecode each time it's run, and after the request it's discarded. Of course you can have sessions, to persist data between requests from the same user, and as I see there are extensions like APC, with which you can persist objects between requests at the server level. My question is: how can one create a PHP application that works like rails and such? I mean an application that on the first requests sets up the framework, then on the 2nd and later requests use the objects that are already set up. Is there some built in caching facility in mod_php? (for example that stores the compiled bytecode of the executed php applications) Or is using APC or some similar extensions the only way to solve this problem? How would you do it? Thanks.

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• Convert Form to UserControl

  - by Joe

  I have a 3rd party code library that I'm using; part of this library is a winforms application for editing the configuration files used by this library. I would like to embed their configuration editor app into my application. I have the source code to their library and the configuration editor is (as far as I can tell) a straight forward Winforms app using standard controls. I'm trying to convert the app's main form into a UserControl so that I can host it inside my application which is WPF (WPF's WindowsFormsHost won't host a Form object, I get an exception). I changed the form object to inherit from UserControl instead of Form and fixed all the compiler errors (there weren't many, just property initializations that don't exist on UserControls) but what's happening is my newly converted control is just blank. When I run my test app I don't see any of the controls that make up the original form, just a blank page. Any ideas? I really don't want to have to re-implement their app from scratch, that would suck. Edit: I forgot to mention I'm testing this in a WinForms application, not WPF, to just get the control working before trying to use it from WPF.

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• How to make an entity out of a join table without primary key

  - by tputkonen

  I'm trying to generate JPA entities out of an existing database having an "interesting" design. Database has a table called UserSet, which can have links to several other UserSets. There is a one to many relation between UserSets and LinkedUserSets. LinkedUserSets also has one to one relation to UserSets. I tried to generate a JPA Entity out of the database structure using Dali JPA Tools. The resulting entity Linkeduserset misses @Id or @EmbeddedId annotation and thus failes to compile. As the resulting entity contains only two @JoinColumns (which cannot be marked as @Id), I have not so far found a way around this issue. Database structure can not be modified in any way. Is there a way to overcome this somehow? Relevant pars of create table statements: CREATE TABLE `LinkedUserSets` ( `UsrSetID` INT(11) NOT NULL DEFAULT '0' , `ChildID` INT(11) NOT NULL DEFAULT '0' , CONSTRAINT `fk_LinkedUserSets_UserSet1` FOREIGN KEY (`UsrSetID` ) REFERENCES `UserSet` (`UsrSetID` )); CREATE TABLE `UserSet` ( `UsrSetID` INT(11) NOT NULL AUTO_INCREMENT , PRIMARY KEY (`UsrSetID`), CONSTRAINT `fk_UserSet_LinkedUserSets1` FOREIGN KEY (`UsrSetID` ) REFERENCES `LinkedUserSets` (`ChildID` )); Generated entities: @Entity @Table(name="linkedusersets") public class Linkeduserset { //bi-directional many-to-one association to Userset @ManyToOne @JoinColumn(name="UsrSetID") private Userset userset1; //bi-directional one-to-one association to Userset @OneToOne @JoinColumn(name="ChildID") private Userset userset2; } @Entity @Table(name="userset") public class Userset { private static final long serialVersionUID = 1L; @Id @Column(name="UsrSetID") private int jngSetID; //bi-directional many-to-one association to Linkeduserset @OneToMany(mappedBy="userset1") private Set<Linkeduserset> linkedusersets; //bi-directional one-to-one association to Linkeduserset @OneToOne(mappedBy="userset2") private Linkeduserset linkeduserset; } Error message: Entity "Linkeduserset" has no Id or EmbeddedId

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• How to verify the SSL connection when calling a URI?

  - by robertokl

  Hello, I am developing a web application that is authenticated using CAS (A single-sign-on solution: http://www.ja-sig.org/wiki/display/CAS/Home). For security reasons, I need two things to work: The communication between CAS and my application needs to be secure My application needs to accept the certification coming from CAS, so that I can guarantee that the CAS responding is the real CAS server This is what I got so far: uri = URI.parse("https://www.google.com/accounts") https = Net::HTTP.new(uri.host, uri.port) https.use_ssl = (uri.scheme == 'https') https.verify_mode = (OpenSSL::SSL::VERIFY_PEER) raw_res = https.start do |conn| conn.get("#{uri.path}?#{uri.query}") end This works just great in Mac OS X. When I try to reach an insecure URI, it raises an exception, and when I try to reach a secure URI, it allows me normally, just like expected. The problem starts when I deploy my application on my Linux server. I tried in both Ubuntu and Red Hat. Independent of what URI I try to reach, it always raises this exception: OpenSSL::SSL::SSLError: SSL_connect returned=1 errno=0 state=SSLv3 read server certificate B: certificate verify failed from /usr/local/lib/ruby/1.8/net/http.rb:586:in `connect' from /usr/local/lib/ruby/1.8/net/http.rb:586:in `connect' from /usr/local/lib/ruby/1.8/net/http.rb:553:in `do_start' from /usr/local/lib/ruby/1.8/net/http.rb:542:in `start' from (irb):7 I think this have something to do with my installed OpenSSL package, but I can't be sure. This are my installed OpenSSL packages: openssl.x86_64 0.9.8e-12.el5 installed openssl-devel.x86_64 0.9.8e-12.el5 installed I tried using HTTParty as well, but it just ignores the SSL certificate. I hope someone can help me, or tell me about a gem that works the way I need. Thanks.

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• DSP - Filtering frequencies using DFT

  - by Trap

  I'm trying to implement a DFT-based 8-band equalizer for the sole purpose of learning. To prove that my DFT implementation works I fed an audio signal, analyzed it and then resynthesized it again with no modifications made to the frequency spectrum. So far so good. I'm using the so-called 'standard way of calculating the DFT' which is by correlation. This method calculates the real and imaginary parts both N/2 + 1 samples in length. To attenuate a frequency I'm just doing: float atnFactor = 0.6; Re[k] *= atnFactor; Im[k] *= atnFactor; where 'k' is an index in the range 0 to N/2, but what I get after resynthesis is a slighty distorted signal, especially at low frequencies. The input signal sample rate is 44.1 khz and since I just want a 8-band equalizer I'm feeding the DFT 16 samples at a time so I have 8 frequency bins to play with. Can someone show me what I'm doing wrong? I tried to find info on this subject on the internet but couldn't find any. Thanks in advance.

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• .NET Thread.Abort again

  - by hoodoos

  Again I want to talk about safety of the Thread.Abort function. I was interested to have some way to abort operations which I can't control really and don't want actually, but I want to have my threads free as soon as possible to prevent thread thirsty of my application. So I wrote some test code to see if it's possible to use Thread.Abort and have the aborting thread clean up resources propertly. Here's code: int threadRunCount = 0; int threadAbortCount = 0; int threadFinallyCount = 0; int iterations = 0; while( true ) { Thread t = new Thread( () => { threadRunCount++; try { Thread.Sleep( Random.Next( 45, 55 ) ); } catch( ThreadAbortException ) { threadAbortCount++; } finally { threadFinallyCount++; } } ); t.Start(); Thread.Sleep( 45 ); t.Abort(); iterations++; } So, so far this code worked for about 5 mins, and threadRunCount was always equal to threadFinally and threadAbort was somewhat lower in number, because some threads completed with no abort or probably got aborted in finally. So the question is, do I miss something?

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• How do I programatically add an article page to a sharepoint site?

  - by soniiic

  I've been given the task of content migration from another CMS system to SharePoint 2010. The data in the old system is fairly easy to capture and the page hierarchy is simple so I'm not worried about that. However, I am completely flummoxed about how to even create a page in code. I'm using the Microsoft.SharePoint.Client namespace as I do not have sharepoint installed on my system and am wanting to code this up as a console application and so I'm using I'm using ClientContext. (On the other hand, I am willing to go into other solutions if necessary). My end-game: To get a page uploaded into some folder hierarchy which uses a master page, has the page title in a header web part, and a big ol' content-editable web part in the body so any user can come along and edit the content. Things I've tried so far: Using FileCollection.Add() to add an aspx file to the folder "Site Pages". This renders the html in the browser but doesn't enable any features for the user to edit the page Using ListItemCollection.Add() to add a page to the site, but I didn't know what fields I needed. Also I remember it came up with a runtime error saying I should use FileCollection.Add() Uploading to 'Site Pages' instead of 'Pages' So many others... ow my head :( The only plausible thing I can see on the net is to use the PublishingPage type along with PublishingWeb. However, PublishingWeb can only be constructed from an SPWeb object which requires me to be actually hosting the sharepoint application on my workstation. If anyone can lend a hand that would be greatly appreciated :)

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• WPF DataBinding to standard CLR properties in code-behind

  - by nukefusion

  Hi everyone, Just learning WPF databinding and have a gap in my understanding. I've seen a few similar questions on StackOverflow, but I'm still struggling in determining what I have done wrong. I have a simple Person class with a Firstname and Surname property (standard CLR properties). I also have a standard CLR property on my Window class that exposes an instance of Person. I've then got some XAML, with two methods of binding. The first works, the second doesn't. Can anybody help me to understand why the second method fails? There's no binding error message in the Output log. <Window x:Class="WpfApplication1.Window1" xmlns="http://schemas.microsoft.com/winfx/2006/xaml/presentation" xmlns:x="http://schemas.microsoft.com/winfx/2006/xaml" xmlns:local="clr-namespace:WpfApplication1" Title="Window1" Height="300" Width="300" DataContext="{Binding RelativeSource={RelativeSource Self}, Path=MyPerson}"> <StackPanel> <Label>My Person</Label> <WrapPanel> <Label>First Name:</Label> <Label Content="{Binding RelativeSource={RelativeSource AncestorType=Window, Mode=FindAncestor}, Path=MyPerson.FirstName}"></Label> </WrapPanel> <WrapPanel> <Label>Last Name:</Label> <Label Content="{Binding MyPerson.Surname}"></Label> </WrapPanel> </StackPanel> Edit: Ok, thanks so far. I've changed the second expression to: <Label Content="{Binding Surname}"></Label> I still can't get it to work though!

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• Help with copy and deepcopy in Python

  - by Az

  Hi there, I think I tried to ask for far too much in my previous question so apologies for that. Let me lay out my situation in as simple a manner as I can this time. Basically, I've got a bunch of dictionaries that reference my objects, which are in turn mapped using SQLAlchemy. All fine with me. However, I want to make iterative changes to the contents of those dictionaries. The problem is that doing so will change the objects they reference---and using copy.copy() does no good since it only copies the references contained within the dictionary. Thus even if copied something, when I try to, say print the contents of the dictionary, I'll only get the latest updated values for the object. This is why I wanted to use copy.deepcopy() but that does not work with SQLAlchemy. Now I'm in a dilemma since I need to copy certain attributes of my object before making said iterative changes. In summary, I need to use SQLAlchemy and at the same time make sure I can have a copy of my object attributes when making changes so I don't change the referenced object itself. Any advice, help, suggestions, etc.?

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• Populate textboxes with XmlNode.Attributes

  - by Doug

  I have Data.xml: <?xml version="1.0" encoding="utf-8" ?> <data> <album> <slide title="Autum Leaves" description="Leaves from the fall of 1986" source="images/Autumn Leaves.jpg" thumbnail="images/Autumn Leaves_thumb.jpg" /> <slide title="Creek" description="Creek in Alaska" source="images/Creek.jpg" thumbnail="images/Creek_thumb.jpg" /> </album> </data> I'd like to be able to edit the attributes of each Slide node via GridView (that has a "Select" column added.) And so far I have: protected void GridView1_SelectedIndexChanged(object sender, EventArgs e) { int selectedIndex = GridView1.SelectedIndex; LoadXmlData(selectedIndex); } private void LoadXmlData(int selectedIndex) { XmlDocument xmldoc = new XmlDocument(); xmldoc.Load(MapPath(@"..\photo_gallery\Data.xml")); XmlNodeList nodelist = xmldoc.DocumentElement.ChildNodes; XmlNode xmlnode = nodelist.Item(selectedIndex); titleTextBox.Text = xmlnode.Attributes["title"].InnerText; descriptionTextBox.Text = xmlnode.Attributes["description"].InnerText; sourceTextBox.Text = xmlnode.Attributes["source"].InnerText; thumbTextBox.Text = xmlnode.Attributes["thumbnail"].InnerText; } The code for LoadXmlData is just a guess on my part - I'm new to working with xml in this way. I'd like have the user to slected the row from the gridview, then populate a set of text boxes with each slide attributed for updating back to the Data.xml file. The error I'm getting is Object reference not set to an instance of an object" at the line: titleTextBox.Text = xmlnode.Attributes["@title"].InnerText; so I'm not reaching the attribute "title" of the slide node. Thanks for any ideas you may have.

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• Count the prime numbers from 2 to 100 with simpler code than this

  - by RufioLJ

  It has to be with just functions, variables, loops, etc (Basic stuff). I'm having trouble coming up with the code from scratch from what I've I learned so far(Should be able to do it). Makes me really mad :/. If you could give me step by step to make sure I understand I'd really really appreciated. Thanks a bunch in advanced. How could I get the same result with a simpler code than this one: var primes=4; for (var counter = 2; counter <= 100; counter = counter + 1) { var isPrime = 0; if(isPrime === 0){ if(counter === 2){console.log(counter);} else if(counter === 3){console.log(counter);} else if(counter === 5){console.log(counter);} else if(counter === 7){console.log(counter);} else if(counter % 2 === 0){isPrime=0;} else if(counter % 3 === 0){isPrime=0;} else if(counter % 5 === 0){isPrime=0;} else if(counter % 7 === 0){isPrime=0;} else { console.log(counter); primes = primes + 1; } } } console.log("Counted: "+primes+" primes");

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• DataGrid - Edit the selected row when a button is clicked.

  - by Chepech

  Hi all. I have a very simple DataGrid with 2 columns, some thing like this: <mx:DataGrid id="grid" > <mx:columns> <mx:DataGridColumn dataField="name" headerText="Name"/> <mx:DataGridColumn dataField="date" headerText="Date"/> </mx:columns> </mx:DataGrid> What Im trying to do is to activate the edition of the selected row when the user clicks a button. So far I've been unable to find any example of how to do this. I already tried 6 or 7 different approaches but non works. Does any one has a clue how to do this? How do you get the selected row (NOT selectedItem) of a DataGrid and how can you: Change the ItemRenderEditor or ItemRenderer on the fly of just that row. Or enable the edition of that specific row without clicking it. This are the questions that I've been unable to answer Help will be greatly appreciated.

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• converting a Tree to newick format. java

  - by Esmond

  I'm having problems converting a binary rooted tree to newick format. The full explanation for such a format can be found: http://code.google.com/p/mrsrf/wiki/NewickTree An example of a newick format would be as follows: for a tree T such as http://www.cs.mcgill.ca/~cs251/OldCourses/1997/topic8/images/completetreetwo.gif the newick representation would be: (((8,9),(10,11)),((12,13),(14,15))) the internal node will become the commas while the leaves will be retained. such trees have internal nodes which will always have 2 children. I have a problem using recursion to come out with this newick format. The output contains far too many nodes and braces. Any comments to resolve this problem is appreciated or even an iterative algorithm would be welcomed import java.util.Stack; public class Tree { .... public String inOrderNewick(Node root, String output) throws ItemNotFoundException { if (root.hasChild()) { output += "("; output += inOrderNewick(root.child1, output); output += ","; output += inOrderNewick(root.child2, output); output += ")"; return output; } else { output += root.getSeq(); return output; } } }

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• R: How to remove outliers from a smoother in ggplot2?

  - by John

  I have the following data set that I am trying to plot with ggplot2, it is a time series of three experiments A1, B1 and C1 and each experiment had three replicates. I am trying to add a stat which detects and removes outliers before returning a smoother (mean and variance?). I have written my own outlier function (not shown) but I expect there is already a function to do this, I just have not found it. I've looked at stat_sum_df("median_hilow", geom = "smooth") from some examples in the ggplot2 book, but I didn't understand the help doc from Hmisc to see if it removes outliers or not. Is there a function to remove outliers like this in ggplot, or where would I amend my code below to add my own function? library (ggplot2) data = data.frame (day = c(1,3,5,7,1,3,5,7,1,3,5,7,1,3,5,7,1,3,5,7,1,3,5,7,1,3,5,7,1,3,5,7,1,3,5,7), od = c( 0.1,1.0,0.5,0.7 ,0.13,0.33,0.54,0.76 ,0.1,0.35,0.54,0.73 ,1.3,1.5,1.75,1.7 ,1.3,1.3,1.0,1.6 ,1.7,1.6,1.75,1.7 ,2.1,2.3,2.5,2.7 ,2.5,2.6,2.6,2.8 ,2.3,2.5,2.8,3.8), series_id = c( "A1", "A1", "A1","A1", "A1", "A1", "A1","A1", "A1", "A1", "A1","A1", "B1", "B1","B1", "B1", "B1", "B1","B1", "B1", "B1", "B1","B1", "B1", "C1","C1", "C1", "C1", "C1","C1", "C1", "C1", "C1","C1", "C1", "C1"), replicate = c( "A1.1","A1.1","A1.1","A1.1", "A1.2","A1.2","A1.2","A1.2", "A1.3","A1.3","A1.3","A1.3", "B1.1","B1.1","B1.1","B1.1", "B1.2","B1.2","B1.2","B1.2", "B1.3","B1.3","B1.3","B1.3", "C1.1","C1.1","C1.1","C1.1", "C1.2","C1.2","C1.2","C1.2", "C1.3","C1.3","C1.3","C1.3")) > data day od series_id replicate 1 1 0.10 A1 A1.1 2 3 1.00 A1 A1.1 3 5 0.50 A1 A1.1 4 7 0.70 A1 A1.1 5 1 0.13 A1 A1.2 6 3 0.33 A1 A1.2 7 5 0.54 A1 A1.2 8 7 0.76 A1 A1.2 9 1 0.10 A1 A1.3 10 3 0.35 A1 A1.3 11 5 0.54 A1 A1.3 12 7 0.73 A1 A1.3 13 1 1.30 B1 B1.1 This is what I have so far and is working nicely, but outliers are not removed: r <- ggplot(data = data, aes(x = day, y = od)) r + geom_point(aes(group = replicate, color = series_id)) + # add points geom_line(aes(group = replicate, color = series_id)) + # add lines geom_smooth(aes(group = series_id)) # add smoother, average of each replicate

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• iPhone dev: Recurse all project resoureces and collect paths

  - by thomax

  I have a bunch of HTML resources in my app organized in a hierarchy like so: dirA |---> index.html |---> a1.html |---> a2.html |---> dirB |---> b1.html |---> b2.html |---> dirC |---> c5.html |---> c19.html I'm trying to collect the absolute paths of all HTML resources however deep down, but can't seem to figure out how. So far I've tried: NSArray myPaths = [[NSBundle mainBundle] pathsForResourcesOfType:@"html" inDirectory:nil]; This returns an empty array, because I have no HTML files at the root of my project. Then there is: NSArray myPaths = [[NSBundle mainBundle] pathsForResourcesOfType:@"html" inDirectory:@"dirA"]; This returns an array containing only the paths for the three HTML resources directly below dirA. If I read the doc correctly, I guess this is to be expected; pathsForResourcesOfType does not traverse subdirectories. But is there a (preferably nice) way to do it?

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• Moving a large number of files in one directory to multiple directories

  - by Axsuul

  I am looking to create a Windows batch script to move about 2,000 files and splitting them up so that there are 10 files per folder. I have attempted creating a batch script but the syntax really boggles my mind. Here is what I have so far @echo off :: Config parameters set /a groupsize = 10 :: initial counter, everytime counter is 1, we create new folder set /a n = 1 :: folder counter set /a nf = 1 for %%f in (*.txt) do ( :: if counter is 1, create new folder if %n% == 1 ( md folder%nf% set /a n += 1 ) :: move file into folder mv -Y %%f folder%nf%\%%f :: reset counter if larger than group size if %n% == %groupsize% ( set /a n = 1 ) else ( set /a n += 1 ) ) pause Basically what this script does is loop through each .txt file in the directory. It creates a new directory in the beginning and moves 10 files into that directory, then creates a new folder again and moves another 10 files into that directory, and so on. However, I'm having problems where the n variable is not being incremented in the loop? I'm sure there's other errors too since the CMD window closes on me even with pause. Any help or guidance is appreciated, thanks for your time!

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• loops and conditionals inside triggers

  - by Ying

  I have this piece of logic I would like to implement as a trigger, but I have no idea how to do it! I want to create a trigger that, when a row is deleted, it checks to see if the value of one of its columns exists in another table, and if it does, it should also perform a delete on another table based on another column. So say we had a table Foo that has columns Bar, Baz. This is what id be doing if i did not use a trigger: function deleteFromFooTable(FooId) { SELECT (Bar,Baz) FROM FooTable WHERE id=FooId if not-empty(SELECT * FROM BazTable WHERE id=BazId) DELETE FROM BarTable WHERE id=BarId DELETE FROM FooTable WHERE id=FooId } I jumped some hoops in that pseudo code, but i hope you all get where im going. It seems what i would need is a way to do conditionals and to loop(in case of multiple row deletes?) in the trigger statement. So far, I haven't been able to find anything. Is this not possible, or is this bad practice? Thanks!

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• Getting started with massive data

  - by Max

  I'm a math guy and occasionally do some statistics/machine learning analysis consulting projects on the side. The data I have access to are usually on the smaller side, at most a couple hundred of megabytes (and almost always far less), but I want to learn more about handling and analyzing data on the gigabyte/terabyte scale. What do I need to know and what are some good resources to learn from? Hadoop/MapReduce is one obvious start. Is there a particular programming language I should pick up? (I primarily work now in Python, Ruby, R, and occasionally Java, but it seems like C and Clojure are often used for large-scale data analysis?) I'm not really familiar with the whole NoSQL movement, except that it's associated with big data. What's a good place to learn about it, and is there a particular implementation (Cassandra, CouchDB, etc.) I should get familiar with? Where can I learn about applying machine learning algorithms to huge amounts of data? My math background is mostly on the theory side, definitely not on the numerical or approximation side, and I'm guessing most of the standard ML algorithms don't really scale. Any other suggestions on things to learn would be great!

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• firefox reading web page from local JS file -- access to restricted URI denied, code: 1012, nsresult

  - by macias

  My problem is -- I have a html file which is really JS program, which reads web pages and show them in customized manner (i.e. it displays the same content in a different way). Basically, I create XMLHttpRequest object and then req.open("GET", web_page_address, false); req.send(""); This gives me (in firefox) an error: Error: uncaught exception: [Exception... "Access to restricted URI denied" code: "1012" nsresult: "0x805303f4 (NS_ERROR_DOM_BAD_URI)" I already googled, and looked at SO but all other issues are very similar with those two exceptions: the file I open in firefox is a local file, opened directly in browser -- I don't have www server running at localhost I don't have any control over the web pages I am reading stuff from So, several solutions I've seen so far (like adding PHP proxy, changing the way external server sends data) cannot be applied here. What else can be done in such case? Another story is I am wondering if such strict security for directly local file has any sense. Thank you in advance for tips/links/etc. Have a nice day!

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