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  • improve my python program to fetch the desire rows by using if condition

    - by user2560507
    unique.txt file contains: 2 columns with columns separated by tab. total.txt file contains: 3 columns each column separated by tab. I take each row from unique.txt file and find that in total.txt file. If present then extract entire row from total.txt and save it in new output file. ###Total.txt column a column b column c interaction1 mitochondria_205000_225000 mitochondria_195000_215000 interaction2 mitochondria_345000_365000 mitochondria_335000_355000 interaction3 mitochondria_345000_365000 mitochondria_5000_25000 interaction4 chloroplast_115000_128207 chloroplast_35000_55000 interaction5 chloroplast_115000_128207 chloroplast_15000_35000 interaction15 2_10515000_10535000 2_10505000_10525000 ###Unique.txt column a column b mitochondria_205000_225000 mitochondria_195000_215000 mitochondria_345000_365000 mitochondria_335000_355000 mitochondria_345000_365000 mitochondria_5000_25000 chloroplast_115000_128207 chloroplast_35000_55000 chloroplast_115000_128207 chloroplast_15000_35000 mitochondria_185000_205000 mitochondria_25000_45000 2_16595000_16615000 2_16585000_16605000 4_2785000_2805000 4_2775000_2795000 4_11395000_11415000 4_11385000_11405000 4_2875000_2895000 4_2865000_2885000 4_13745000_13765000 4_13735000_13755000 My program: file=open('total.txt') file2 = open('unique.txt') all_content=file.readlines() all_content2=file2.readlines() store_id_lines = [] ff = open('match.dat', 'w') for i in range(len(all_content)): line=all_content[i].split('\t') seq=line[1]+'\t'+line[2] for j in range(len(all_content2)): if all_content2[j]==seq: ff.write(seq) break Problem: but istide of giving desire output (values of those 1st column that fulfile the if condition). i nead somthing like if jth of unique.txt == ith of total.txt then write ith row of total.txt into new file.

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  • Python - List and Loop in one def

    - by Dunwitch
    I'm trying to get the def wfsc_pod1 and wfsc_ip into the same def. I'm not quite sure how to approach the problem. I want wfsc_pod1 to display all the information for name, subnet and gateway. Then wfsc_ip shows the ip addresses below it. I also get a None value when I run it as it. Not sure why. Anything more pythonic is more appreciated. class OutageAddress: subnet = ["255.255.255.0", "255.255.255.1"] # Gateway order is matched with names gateway = ["192.168.1.1", "192.168.1.2", "192.168.1.3", "192.168.1.4", "192.168.1.5", "192.168.1.6", "192.168.1.7", "192.168.1.8", "192.168.1.9"] name = ["LOC1", "LOC2", "LOC3", "LOC4", "LOC5", "LOC6", "LOC7", "LOC8", "LOC9"] def wfsc_pod1(self): wfsc_1 = "%s\t %s\t %s\t" % (network.name[0],network.subnet[0],network.gateway[0]) return wfsc_1 def wfsc_ip(self): for ip in range(100,110): ip = "192.168.1."+str(ip) print ip network = OutageAddress() print network.wfsc_pod1() print network.wfsc_ip()

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  • Help with python list-comprehension

    - by leChuck
    A simplified version of my problem: I have a list comprehension that i use to set bitflags on a two dimensional list so: s = FLAG1 | FLAG2 | FLAG3 [[c.set_state(s) for c in row] for row in self.__map] All set_state does is: self.state |= f This works fine but I have to have this function "set_state" in every cell in __map. Every cell in __map has a .state so what I'm trying to do is something like: [[c.state |= s for c in row] for row in self.map] or map(lambda c: c.state |= s, [c for c in row for row in self.__map]) Except that neither works (Syntax error). Perhaps I'm barking up the wrong tree with map/lamda but I would like to get rid on set_state. And perhaps know why assignment does not work in the list-comprehension

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  • Sorting and aligning the contents of a text file in Python

    - by Emily Price
    In my program I have a text file that I read from and write to. However, I would like to display the contents of the text file in an aligned and sorted manner. The contents currently read: name, score name, score This is my code where the text file in read and printed: elif userCommand == 'V': print "High Scores:" scoresFile = open("scores1.txt", 'r') scores = scoresFile.read().split("\n") for score in scores: print score scoresFile.close() Would I have to convert this information into lists in order to be able to do this? If so, how do I go about doing this? Thank you

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  • importing classes python

    - by Richard
    Just wondering why import sys exit(0) gives me this error: Traceback (most recent call last): File "<pyshell#1>", line 1, in ? exit(0) TypeError: 'str' object is not callable but from sys import exit exit(0) works fine?

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  • Python implementation of avro slow?

    - by lazy1
    I'm reading some data from avro file using the avro library. It takes about a minute to load 33K objects from the file. This seem very slow to me, specially with the Java version reading the same file in about 1sec. Here is the code, am I doing something wrong? import avro.datafile import avro.io from time import time def load(filename): fo = open(filename, "rb") reader = avro.datafile.DataFileReader(fo, avro.io.DatumReader()) for i, record in enumerate(reader): pass return i + 1 def main(argv=None): import sys from argparse import ArgumentParser argv = argv or sys.argv parser = ArgumentParser(description="Read avro file") start = time() num_records = load("events.avro") end = time() print("{0} records in {1} seconds".format(num_records, end - start)) if __name__ == "__main__": main()

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  • tkinter python entry not being displayed

    - by user1050619
    I have created a Form with labels and entries..but for some reason the entries are not being created, peoplegui.py from tkinter import * from tkinter.messagebox import showerror import shelve shelvename = 'class-shelve' fieldnames = ('name','age','job','pay') def makewidgets(): global entries window = Tk() window.title('People Shelve') form = Frame(window) form.pack() entries = {} for (ix, label) in enumerate(('key',) + fieldnames): lab = Label(form, text=label) ent = Entry(form) lab.grid(row=ix, column=0) lab.grid(row=ix, column=1) entries[label] = ent Button(window, text="Fetch", command=fetchRecord).pack(side=LEFT) Button(window, text="Update", command=updateRecord).pack(side=LEFT) Button(window, text="Quit", command=window.quit).pack(side=RIGHT) return window def fetchRecord(): print('In fetch') def updateRecord(): print('In update') if __name__ == '__main__': window = makewidgets() window.mainloop() When I run it the labels are created but not the entries.

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  • Custom constructors for models in Google App Engine (python)

    - by Nikhil Chelliah
    I'm getting back to programming for Google App Engine and I've found, in old, unused code, instances in which I wrote constructors for models. It seems like a good idea, but there's no mention of it online and I can't test to see if it works. Here's a contrived example, with no error-checking, etc.: class Dog(db.Model): name = db.StringProperty(required=True) breeds = db.StringListProperty() age = db.IntegerProperty(default=0) def __init__(self, name, breed_list, **kwargs): db.Model.__init__(**kwargs) self.name = name self.breeds = breed_list.split() rufus = Dog('Rufus', 'spaniel terrier labrador') rufus.put() The **kwargs are passed on to the Model constructor in case the model is constructed with a specified parent or key_name, or in case other properties (like age) are specified. This constructor differs from the default in that it requires that a name and breed_list be specified (although it can't ensure that they're strings), and it parses breed_list in a way that the default constructor could not. Is this a legitimate form of instantiation, or should I just use functions or static/class methods? And if it works, why aren't custom constructors used more often?

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  • optimize python code

    - by user283405
    i have code that uses BeautifulSoup library for parsing. But it is very slow. The code is written in such a way that threads cannot be used. Can anyone help me about this? I am using beautifulsoup library for parsing and than save in DB. if i comment the save statement, than still it takes time so there is no problem with database. def parse(self,text): soup = BeautifulSoup(text) arr = soup.findAll('tbody') for i in range(0,len(arr)-1): data=Data() soup2 = BeautifulSoup(str(arr[i])) arr2 = soup2.findAll('td') c=0 for j in arr2: if str(j).find("<a href=") > 0: data.sourceURL = self.getAttributeValue(str(j),'<a href="') else: if c == 2: data.Hits=j.renderContents() #and few others... #... c = c+1 data.save() Any suggestions? Note: I already ask this question here but that was closed due to incomplete information.

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  • networking application and GUI in python

    - by pygabriel
    I'm writing an application that sends files over network, I want to develop a custom protocol to not limit myself in term on feature richness (http wouldn't be appropriate, the nearest thing is the bittorrent protocol maybe). I've tried with twisted, I've built a good app but there's a bug that makes my GUI blocking, so I've to switch to another framework/strategy. What do you suggest? Using raw sockets and using gtk mainloop (there are select-like functions in the toolkit) is too much difficult? It's viable running two mainloops in different threads? Asking for suggestions

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  • How to find links and modify an Html using BeautifulSoup in Python

    - by systempuntoout
    Starting from an Html input like this: <p> <a href="http://www.foo.com">this if foo</a> <a href="http://www.bar.com">this if bar</a> </p> using BeautifulSoup, i would like to change this Html in: <p> <a href="http://www.foo.com">this if foo[1]</a> <a href="http://www.bar.com">this if bar[2]</a> </p> saving parsed links in a dictionary with a result like this: links_dict = {"1":"http://www.foo.com","2":"http://www.bar.com"} Is it possible to do this using BeautifulSoup? Any valid alternative?

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  • Python finding substring between certain characters using regex and replace()

    - by jCuga
    Suppose I have a string with lots of random stuff in it like the following: strJunk ="asdf2adsf29Value=five&lakl23ljk43asdldl" And I'm interested in obtaining the substring sitting between 'Value=' and '&', which in this example would be 'five'. I can use a regex like the following: match = re.search(r'Value=?([^&>]+)', strJunk) >>> print match.group(0) Value=five >>> print match.group(1) five How come match.group(0) is the whole thing 'Value=five' and group(1) is just 'five'? And is there a way for me to just get 'five' as the only result? (This question stems from me only having a tenuous grasp of regex) I am also going to have to make a substitution in this string such such as the following: val1 = match.group(1) strJunk.replace(val1, "six", 1) Which yields: 'asdf2adsf29Value=six&lakl23ljk43asdldl' Considering that I plan on performing the above two tasks (finding the string between 'Value=' and '&', as well as replacing that value) over and over, I was wondering if there are any other more efficient ways of looking for the substring and replacing it in the original string. I'm fine sticking with what I've got but I just want to make sure that I'm not taking up more time than I have to be if better methods are out there.

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  • Error with python decorator

    - by Timmy
    I get this error object has no attribute 'im_func' with this class Test(object): def __init__(self, f): self.func = f def __call__( self, *args ): return self.func(*args) pylons code: class TestController(BaseController): @Test def index(self): return 'hello world'

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  • Get class of caller's method (via inspect) in Python

    - by Slava Vishnyakov
    Is it possible to get reference to class B in this example? class A(object): pass class B(A): def test(self): test2() class C(B): pass import inspect def test2(): frame = inspect.currentframe().f_back cls = frame.[?something here?] # cls here should == B (class) c = C() c.test() Basically, C is child of B, B is child of A. Then we create c of type C. Then the call to c.test() actually calls B.test() (via inheritance), which calls to test2(). test2() can get the parent frame frame; code reference to method via frame.f_code; self via frame.f_locals['self']; but type(frame.f_locals['self']) is C (of course), but not B, where method is defined. Any way to get B?

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  • Python: eliminating stack traces into library code?

    - by Mark Harrison
    When I get a runtime exception from the standard library, it's almost always a problem in my code and not in the library code. Is there a way to truncate the exception stack trace so that it doesn't show the guts of the library package? For example, I would like to get this: Traceback (most recent call last): File "./lmd3-mkhead.py", line 71, in <module> main() File "./lmd3-mkhead.py", line 66, in main create() File "./lmd3-mkhead.py", line 41, in create headver1[depotFile]=rev TypeError: Data values must be of type string or None. and not this: Traceback (most recent call last): File "./lmd3-mkhead.py", line 71, in <module> main() File "./lmd3-mkhead.py", line 66, in main create() File "./lmd3-mkhead.py", line 41, in create headver1[depotFile]=rev File "/usr/anim/modsquad/oses/fc11/lib/python2.6/bsddb/__init__.py", line 276, in __setitem__ _DeadlockWrap(wrapF) # self.db[key] = value File "/usr/anim/modsquad/oses/fc11/lib/python2.6/bsddb/dbutils.py", line 68, in DeadlockWrap return function(*_args, **_kwargs) File "/usr/anim/modsquad/oses/fc11/lib/python2.6/bsddb/__init__.py", line 275, in wrapF self.db[key] = value TypeError: Data values must be of type string or None.

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  • Unable to open images with Python's Image.open()

    - by ensnare
    My code reads: import Image def generateThumbnail(self, width, height): """ Generates thumbnails for an image """ im = Image.open(self._file) When I call this function, I get an error: ? AttributeError: type object 'Image' has no attribute 'open' However in the console: import Image im = Image.open('test.jpg') I have no problem. Any ideas? Thanks!

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  • fetching from a specified index in a set using python

    - by tipu
    I'm using pagination on a values from a set. So what this results in is me needing to get values from x to x + 20 which can be in the middle of a set with 50,000 entries. Is it possible that I can fetch these values by grabbing by the space in the set? Would it make more sense to do result = [] my_dict = dict(very_big_set) for i in range(30000, 30020) result.append(my_dict[i])

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  • Using a Loop to add objects to a list(python)

    - by Will
    Hey guys so im trying to use a while loop to add objects to a list. Heres bascially what i want to do: (ill paste actually go after) class x: blah blah choice = raw_input(pick what you want to do) while(choice!=0): if(choice==1): Enter in info for the class: append object to list (A) if(choice==2): print out length of list(A) if(choice==0): break ((((other options)))) as im doing this i can get the object to get added to the list, but i am stuck as to how to add multiple objects to the list in the loop. Here is my actual code i have so far... print "Welcome to the Student Management Program" class Student: def init (self, name, age, gender, favclass): self.name = name self.age = age self.gender = gender self.fac = favclass choice = int(raw_input("Make a Choice: " )) while (choice !=0): if (guess==1): print("STUDENT") namer = raw_input("Enter Name: ") ager = raw_input("Enter Age: ") sexer = raw_input("Enter Sex: ") faver = raw_input("Enter Fav: ") elif(guess==2): print "TESTING LINE" elif(guess==3): print(len(a)) guess=int(raw_input("Make a Choice: ")) s = Student(namer, ager, sexer, faver) a =[]; a.append(s) raw_input("Press enter to exit") any help would be greatly appreciated!

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