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  • python how to put data on y-axis when plotting histogram

    - by user3041107
    I don't quite understand how to control y - axis when using plt.hist plot in python. I read my .txt data file - it contains 10 columns with various data. If I want to plot distribution of strain on x axis I take column n.5. But what kind of value appears on y axis ??? Don't understand that. here is the code: import numpy import matplotlib.pyplot as plt from pylab import * from scipy.stats import norm import sys strain = [] infile = sys.argv[1] for line in infile: ret = numpy.loadtxt(infile) strain += list(ret[:,5]) fig = plt.figure() plt.hist(strain, bins = 20) plt.show() Thanks for help!

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  • Dynamically udpate canvasOverlay property of jQuery jqPlot

    - by You Kuper
    I want to dynamically udpate canvasOverlay property of jQuery jqPlot. This will provide the effect of a timeline in my jqPlot. This effect should be similar to the one shown in this jFiddle. However, instead of drawing points, I want to update canvasOverlay property every second: canvasOverlay: { show: true, objects: [ { rectangle: { xmax: new Date(), xminOffset: "0px", xmaxOffset: "0px", yminOffset: "0px", ymaxOffset: "0px", color: "rgba(0, 0, 0, 0.1)", showTooltip: true } }, ] } How can I do this? What are the functions I should use? UPDATE: My idea is to do something like this: canvasOverlay: { name: 'current', show: true, objects: [ { rectangle: { xmax: new Date(), xminOffset: "0px", xmaxOffset: "0px", yminOffset: "0px", ymaxOffset: "0px", color: "rgba(0, 0, 0, 0.1)", showTooltip: true } }, ] } /... var co = plot.plugins.canvasOverlay; var current = co.get('current'); current.options.objects.rectangle.xmax = new Date(); co.draw(plot);

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  • R graphics plotting a linegraph with date/time horizontally along x-axis

    - by user2978586
    I want to get a linegraph in R which has Time along x and temperature along y. Originally I had the data in dd/mm/yyyy hh:mm format, with a time point every 30 minutes. https://www.dropbox.com/s/q35y1rfila0va1h/Data_logger_S65a_Ania.csv Since I couldn't find a way of reading this into R, I formatted the data to make it into dd/mm/yyyy and added a column 'time' with 1-48 for all the time points for each day https://www.dropbox.com/s/65ogxzyvuzteqxv/temp.csv This is what I have so far: temp<-read.csv("temp.csv",as.is=T) temp$date<-as.Date(temp$date, format="%d/%m/%Y") #inputting date in correct format plot(temperature ~ date, temp, type="n") #drawing a blank plot with axes, but without data lines(temp$date, temp$temperature,type="o") #type o is a line overlaid on top of points. This stacks the points up vertically, which is not what I want, and stacks all the time points (1-48) for each day all together on the same date. Any advice would be much appreciated on how to get this horizontal, and ordered by time as well as date.

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  • R software : How to extract values from rasterstack with xy coordinates?

    - by Eddie
    I have a rasterstack(5 raster layers) that actually is a time series raster. r <- raster(nrow=20, ncol=200) s <- stack( sapply(1:5, function(i) setValues(r, rnorm(ncell(r), i, 3) )) ) > s class : RasterStack dimensions : 20, 200, 4000, 5 (nrow, ncol, ncell, nlayers) resolution : 1.8, 9 (x, y) extent : -180, 180, -90, 90 (xmin, xmax, ymin, ymax) coord. ref. : +proj=longlat +datum=WGS84 +ellps=WGS84 +towgs84=0,0,0 names : layer.1, layer.2, layer.3, layer.4, layer.5 min values : -9.012146, -9.165947, -9.707269, -7.829763, -5.332007 max values : 11.32811, 11.97328, 15.99459, 15.66769, 16.72236 My objective is to plot each pixel and explore their behavior over time. How could I extract each pixels together with their x,y coordinates and plot a time series curve?

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  • In R draw two lines, with slopes double and half the value of the best fit line

    - by D W
    I have data with a best fit line draw. I need to draw two other lines. One needs to have double the slope and the other need to have half the slope. Later I will use the region to differentially color points outside it as per: http://stackoverflow.com/questions/2687212/conditionally-colour-data-points-outside-of-confidence-bands-in-r Example dataset: ## Dataset from http://www.apsnet.org/education/advancedplantpath/topics/RModules/doc1/04_Linear_regression.html ## Disease severity as a function of temperature # Response variable, disease severity diseasesev<-c(1.9,3.1,3.3,4.8,5.3,6.1,6.4,7.6,9.8,12.4) # Predictor variable, (Centigrade) temperature<-c(2,1,5,5,20,20,23,10,30,25) ## For convenience, the data may be formatted into a dataframe severity <- as.data.frame(cbind(diseasesev,temperature)) ## Fit a linear model for the data and summarize the output from function lm() severity.lm <- lm(diseasesev~temperature,data=severity) # Take a look at the data plot( diseasesev~temperature, data=severity, xlab="Temperature", ylab="% Disease Severity", pch=16, pty="s", xlim=c(0,30), ylim=c(0,30) ) title(main="Graph of % Disease Severity vs Temperature") par(new=TRUE) # don't start a new plot abline(severity.lm, col="blue")

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  • Towards HEATMAP representation - R -

    - by user3710390
    I am trying to plot a simple heatmap of some data distribution in R. My data = matrix (5000 x3( Time , Complexity, Localisation )). Time ( 0- 7000) Cmplx (0-4) Localisation (1-15). i.e Time Cmplx Localisation 567 3 1 54 0 2 345 3 12 567 4 12 345 2 9 989 4 7 ... ... ... The idea is to plot the Time in relation to each Cmplx and each Localisation (Something like accumarray in mathlab) Have someone an idea? Thanks in advance, Guillon_

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  • Matplotlib Contour Clabel Location

    - by jotimaz
    I would like to control the location of matplotlib clabels on a contour plot, but without utilizing the manual=True flag in clabel. For example, I would like to specify an x-coordinate, and have labels created at the points that pass through this line. I see that you can get the location of the individual labels using get_position(), but I am stuck at that. Any help would be greatly appreciated. Thanks! EDIT: The above image is an example plot that I would like to apply this method to. The default label positions are inconvenient -- the flat areas between Day 2 and Day 4 would be more visually appealing.

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  • Make a simulation using python

    - by user3727759
    I am new to programming and using python. What I am trying to do is create a simulation of a thermostat system by using python. Is there a way to create a program that I can input data, for example temperature and humidity values and then have python constantly plotting the data as I enter the values. This is to simulate a device gathering data and sending it to this program and having it being plotted. I have found ways to plot data by using matplotlib but I have not been able to find a way that I can input the data and have the plot upgrade constantly. Thanks any advise is appreciated.

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  • Create a linear trend line in Excel graphs with logarithmic scale

    - by Redsoft7
    I I have an Excel scatter chart with x and y values. I set the logarithmic scale in x-axis and y-axis. When I add a linear trend line to the graph, the line is not linear but appears like a curve. How can I make a linear trend line on a logarithmic-scaled chart? Sample data: x: 18449 22829 25395 36869 101419 125498 208144 2001508 14359478 17301785 y: 269,09 273,89 239,50 239,50 175,13 176,73 151,94 135,15 131,55 121,55

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  • Building Performance Metrics into ASP.NET MVC Applications

    When you're instrumenting an ASP.NET MVC or Web API application to monitor its performance while it is running, it makes sense to use custom performance counters.There are plenty of tools available that read performance counter data, report on it and create alerts based on it. You can then plot application metrics against all sorts of server and workstation metrics.This way, there will always be the right data to guide your tuning efforts.

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  • Multi-threaded JOGL Problem

    - by moeabdol
    I'm writing a simple OpenGL application in Java that implements the Monte Carlo method for estimating the value of PI. The method is pretty easy. Simply, you draw a circle inside a unit square and then plot random points over the scene. Now, for each point that is inside the circle you increment the counter for in points. After determining for all the random points wither they are inside the circle or not you divide the number of in points over the total number of points you have plotted all multiplied by 4 to get an estimation of PI. It goes something like this PI = (inPoints / totalPoints) * 4. This is because mathematically the ratio of a circle's area to a square's area is PI/4, so when we multiply it by 4 we get PI. My problem doesn't lie in the algorithm itself; however, I'm having problems trying to plot the points as they are being generated instead of just plotting everything at once when the program finishes executing. I want to give the application a sense of real-time display where the user would see the points as they are being plotted. I'm a beginner at OpenGL and I'm pretty sure there is a multi-threading feature built into it. Non the less, I tried to manually create my own thread. Each worker thread plots one point at a time. Following is the psudo-code: /* this part of the code exists in display() method in MyCanvas.java which extends GLCanvas and implements GLEventListener */ // main loop for(int i = 0; i < number_of_points; i++){ RandomGenerator random = new RandomGenerator(); float x = random.nextFloat(); float y = random.nextFloat(); Thread pointThread = new Thread(new PointThread(x, y)); } gl.glFlush(); /* this part of the code exists in run() method in PointThread.java which implements Runnable */ void run(){ try{ gl.glPushMatrix(); gl.glBegin(GL2.GL_POINTS); if(pointIsIn) gl.glColor3f(1.0f, 0.0f, 0.0f); // red point else gl.glColor3f(0.0f, 0.0f, 1.0f); // blue point gl.glVertex3f(x, y, 0.0f); // coordinates gl.glEnd(); gl.glPopMatrix(); }catch(Exception e){ } } I'm not sure if my approach to solving this issue is correct. I hope you guys can help me out. Thanks.

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  • Breathing for game/movie characters

    - by dtldarek
    Breathing (the movement of chest and face features): I'd like to ask if it is hard to model and whether it is computationaly expensive. I recently noticed the great effect it has in Madagascar 3 movie, but (please, correct me if I am wrong) don't remember seeing it in any games (except maybe steam cloud in cold/winter setting) and very few animated movies does that to noticable degree (e.g. when it is necessary by the plot or situation). I'd greatly appreciate answers from both movie graphics and game graphics perspective.

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  • Not able to get graphs on screen with gnuplot

    - by user81194
    I have installed 12.04 along with Windows 7 and also installed gnuplot 4.6.0. When I type gnuplot on the terminal, I am getting the error message: Terminal type set to unknown. When I tried plot sin(x), the graph does not appear on the screen. However, I am able to make a postscript file. I tried set terminal 'x11', system responds with: unknown or ambiguous terminal. Please help me solve this problem.

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  • Change the icon color in LibreOffice Calc

    - by user242234
    There appears to be no way of changing icon color in a calc chart. After creating an XY scatter plot, I can select "format data series" and can change the icon symbol and size, but not the color. There is an drop-down for line color, but when I do not have lines displayed this drop-down menu is grayed out. I have found that I can add lines to my chart, change the color of the lines, then remove the lines and I will have changed the color of the icons, but there should be a direct way to change icon color (and there used to be in previous versions). I am using Libreoffice calc version 4.2.3.3, Build ID: 420m0(Build:3). Running on Ubuntu 14.04.

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  • How should I write new code when the old codebase and the environment uses lots of globals in PHP

    - by Nicola Peluchetti
    I'm working in the Wordpress environment which itself heavily relies on globals and the codebase I'm maintaining introduces some more. I want this to change and so I'm trying to think how should I handle this. For the globals our code has introduced I think I will set them as dependencies in the constructor or in getter / setter so that I don't rely on them being globals and then refactor the old codebase little by little so that we have no globals. With Wordpress globals I was thinking to wrap all WP globals inside a Wrapper class and hide them in there. Like this class WpGlobals { public static function getDb() { global $wpdb; return $wpdb; } } Would this be of any help? The idea is that I centralize all globals in one class and do not scatter them through the code, so that if Wordpress kills one of them I need to modify code only in one place. What would you do?

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  • Windows Azure HPC Scheduler Architecture

    - by Churianov Roman
    So far I've found very little information on the scheduling policy, resource management policy of Azure HPC Scheduler. I would appreciate any kind of information regarding some of these questions: What scheduling policy does a Head Node use to scatter jobs to Compute Nodes? Does Azure Scheduler use prior information about the jobs (compute time, memory demands ...) ? If 'yes', how it gets this information? Does Azure Scheduler split a job into several parallel jobs on one Compute node? Does it have any protection from Compute Node failures? (what it does when a compute node stops responding) Does it support addition/subtraction of Compute nodes? Is it possible to cancel a job? P.S. I'm aware of the MSDN resource Windows Azure HPC Scheduler. I found only information of how to use this Scheduler but almost nothing about how it works inside.

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  • calculate AUC (GAM) in R [migrated]

    - by ahmad
    I used the following script to calculate AUC in R: library(mgcv) library(ROCR) library(AUC) data1=read.table("d:\\2005.txt", header=T) GAM<-gam(tuna ~ s(chla)+s(sst)+s(ssha),family=binomial, data=data1) gampred<- predict(GAM, type="response") rp <- prediction(gampred, data1$tuna) auc <- performance( rp, "auc")@y.values[[1]] auc roc <- performance( rp, "tpr", "fpr") plot( roc ) But when I was running the script, the result is: **rp <- prediction(gampred, data1$tuna) Error in prediction(gampred, data1$tuna) : Format of predictions is invalid. > > auc <- performance( rp, "auc")@y.values[[1]] Error in performance(rp, "auc") : object 'rp' not found > auc function (x, min = 0, max = 1) { if (any(class(x) == "roc")) { if (min != 0 || max != 1) { x$fpr <- x$fpr[x$cutoffs >= min & x$cutoffs <= max] x$tpr <- x$tpr[x$cutoffs >= min & x$cutoffs <= max] } ans <- 0 for (i in 2:length(x$fpr)) { ans <- ans + 0.5 * abs(x$fpr[i] - x$fpr[i - 1]) * (x$tpr[i] + x$tpr[i - 1]) } } else if (any(class(x) %in% c("accuracy", "sensitivity", "specificity"))) { if (min != 0 || max != 1) { x$cutoffs <- x$cutoffs[x$cutoffs >= min & x$cutoffs <= max] x$measure <- x$measure[x$cutoffs >= min & x$cutoffs <= max] } ans <- 0 for (i in 2:(length(x$cutoffs))) { ans <- ans + 0.5 * abs(x$cutoffs[i - 1] - x$cutoffs[i]) * (x$measure[i] + x$measure[i - 1]) } } return(as.numeric(ans)) } <bytecode: 0x03012f10> <environment: namespace:AUC> > > roc <- performance( rp, "tpr", "fpr") Error in performance(rp, "tpr", "fpr") : object 'rp' not found > plot( roc ) Error in levels(labels) : argument "labels" is missing, with no default** Can anybody help me to solve this problem? Thank you in advance.

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  • Silverlight prism region events

    - by synergetic
    In silverlight prism application I have a region (ContentControl) and would like to remove currently active view before adding another view. I tried to use region.PropertyChanged event but it doesn't fire. I can do it in the code where I add new view, but that will scatter my code. How to achieve this? Thanks for reply.

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  • Stata - Multiple rotated plots on graph (including distributions on sides of axes)

    - by meerak
    I would like to produce a single graph containing both: (1) a scatter plot (2) either histograms or kernel density functions of the Y and X variables to the left of the Y axis and below the X axis. I found a graph that does this in MATLAB -- I would just like to produce something similar in Stata: That graph was produced using the following MATLAB code: n = 1000; rho = .7; Z = mvnrnd([0 0], [1 rho; rho 1], n); U = normcdf(Z); X = [gaminv(U(:,1),2,1) tinv(U(:,2),5)]; [n1,ctr1] = hist(X(:,1),20); [n2,ctr2] = hist(X(:,2),20); subplot(2,2,2); plot(X(:,1),X(:,2),'.'); axis([0 12 -8 8]); h1 = gca; title('1000 Simulated Dependent t and Gamma Values'); xlabel('X1 ~ Gamma(2,1)'); ylabel('X2 ~ t(5)'); subplot(2,2,4); bar(ctr1,-n1,1); axis([0 12 -max(n1)*1.1 0]); axis('off'); h2 = gca; subplot(2,2,1); barh(ctr2,-n2,1); axis([-max(n2)*1.1 0 -8 8]); axis('off'); h3 = gca; set(h1,'Position',[0.35 0.35 0.55 0.55]); set(h2,'Position',[.35 .1 .55 .15]); set(h3,'Position',[.1 .35 .15 .55]); colormap([.8 .8 1]); UPDATE: The Stata13 manual entry for "graph combine" has precisely this example (http://www.stata.com/manuals13/g-2graphcombine.pdf). Here is the code: use http://www.stata-press.com/data/r13/lifeexp, clear generate loggnp = log10(gnppc) label var loggnp "Log base 10 of GNP per capita" scatter lexp loggnp, ysca(alt) xsca(alt) xlabel(, grid gmax) fysize(25) saving(yx) twoway histogram lexp, fraction xsca(alt reverse) horiz fxsize(25) saving(hy) twoway histogram loggnp, fraction ysca(alt reverse) ylabel(,nogrid) xlabel(,grid gmax) saving(hx) graph combine hy.gph yx.gph hx.gph, hole(3) imargin(0 0 0 0) graphregion(margin(l=22 r=22)) title("Life expectancy at birth vs. GNP per capita") note("Source: 1998 data from The World Bank Group")

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  • How to select an element by Class instead of ID in ASP.NET?

    - by firedrawndagger
    I have a few scatter elements which I am grouping together using a class like so - . In my code behind, using C# I want to hide these elements, using something like instructions.Visible = false;. However I realize I can only do this in codebehind if I use ID but this will result in invalid HTML/CSS Selector since you can't have multiple ID's with the same ID name... Alternatively is there another way to group the controls if not by class?

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  • MPI datatype for 2 d array

    - by dks
    I need to pass an array of integer arrays (basically a 2 d array )to all the processors from root.I am using MPI in C programs. How to declare MPI datatype for 2 d array.and how to send the message (should i use broadcast or scatter)

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