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  • Mixing Matplotlib patches with polar plot?

    - by Roger
    I'm trying to plot some data in polar coordinates, but I don't want the standard ticks, labels, axes, etc. that you get with the Matplotlib polar() function. All I want is the raw plot and nothing else, as I'm handling everything with manually drawn patches and lines. Here are the options I've considered: 1) Drawing the data with polar(), hiding the superfluous stuff (with ax.axes.get_xaxis().set_visible(False), etc.) and then drawing my own axes (with Line2D, Circle, etc.). The problem is when I call polar() and subsequently add a Circle patch, it's drawn in polar coordinates and ends up looking like an infinity symbol. Also zooming doesn't seem to work with the polar() function. 2) Skip the polar() function and somehow make my own polar plot manually using Line2D. The problem is I don't know how to make Line2D draw in polar coordinates and haven't figured out how to use a transform to do that. Any idea how I should proceed?

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  • How do I restrict foreign keys choices to related objects only in django

    - by Jeff Mc
    I have a two way foreign relation similar to the following class Parent(models.Model): name = models.CharField(max_length=255) favoritechild = models.ForeignKey("Child", blank=True, null=True) class Child(models.Model): name = models.CharField(max_length=255) myparent = models.ForeignKey(Parent) How do I restrict the choices for Parent.favoritechild to only children whose parent is itself? I tried class Parent(models.Model): name = models.CharField(max_length=255) favoritechild = models.ForeignKey("Child", blank=True, null=True, limit_choices_to = {"myparent": "self"}) but that causes the admin interface to not list any children.

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  • Parse large XML file w/ script or use BioPython API ?

    - by jeremy04
    Hey guys this is my first question on here. I'm trying to make a local copy of the UniprotKB in SQL. The UniprotKB is 2.1GB, and it comes in XML and a special text format used by SwissProt Here are my options: 1) Use a SAX parser (XML) - I chose Ruby, and Nokogiri. I started writing the parser, but my initial reaction: how would I map the XML schema to the SAX parser? 2) BioPython - I already have BioSQL/Biopython installed, which literally created my SQL schema for me, and I was able to successfully insert one SwissProt/Uniprot txt file into the database. I'm running it right now (crosses fingers) on the entire 2.1gb. Here is the code I'm running: from Bio import SeqIO from BioSQL import BioSeqDatabase from Bio import SwissProt server = BioSeqDatabase.open_database(driver = "MySQLdb", user = "root", passwd = "", host="localhost", db = "bioseqdb") db = server["uniprot"] iterator = SeqIO.parse(open("/path/to/uniprot_sprot.dat", "r"), "swiss") db.load(iterator) server.commit() Edit: it's now crashing because the transactions are getting locked (since the tables are Innodb) Error Number: 1205 Lock wait timeout exceeded; try restarting transaction. I'm using MySQL version: 5.1.43 Should I switch my database to Postgrelsql ?

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  • Sending message from one server to another in Twisted

    - by Casey Patton
    I've implemented my servers in the following way: def makeServer(application, port): factory = protocol.ServerFactory() factory.protocol = MyChat factory.clients = [] internet.TCPServer(port, factory).setServiceParent(application) application = service.Application("chatserver") server1 = makeServer(application, port=1025) server2 = makeServer(application, port=1026) server3 = makeServer(application, port=1027) Note that MyChat is an event handling class that has a "receiveMessage" action: def lineReceived(self, line): print "received", repr(line) for c in self.factory.clients: c.transport.write(message + '\n') I want server1 to be able to pass messages to server2. Rather, I want server1 to be treated as a client of server2. If server1 receives the message "hi" then I want it to send that same exact message to server2. How can I accomplish this?

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  • How to save and load an array of complex numbers using numpy.savetxt?

    - by ptomato
    I want to use numpy.savetxt() to save an array of complex numbers to a text file. Problems: If you save the complex array with the default format string, the imaginary part is discarded. If you use fmt='%s', then numpy.loadtxt() can't load it unless you specify dtype=complex, converters={0: lambda s: complex(s)}. Even then, if there are NaN's in the array, loading still fails. It looks like someone has inquired about this multiple times on the Numpy mailing list and even filed a bug, but has not gotten a response. Before I put something together myself, is there a canonical way to do this?

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  • What can I use the Google App Engine for?

    - by Sergio Boombastic
    This question possibly doesn't belong here. We'll see how the answers pan out, if this doesn't belong here please move it to where it belongs. I'm following the getting started guide for Google App Engine, and I'm seeing what it can and can't do. Basically, I'm seeing it's very similar to an MVC pattern. You create your model, then create a View that uses that Model to display information. Not only that, but it uses a controller of some kind in this fashion: application = webapp.WSGIApplication( [('/', MainPage)], debug=True) My question is, why would you use this Google App Engine if it's the same as using a number of other MVC frameworks? Is the only benefit you gain the load balancing being handled by Google automagically? What is a good example of something you would need the App Engine for? I'm trying to learn, so thanks for the discussion.

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  • Breadth first search all paths

    - by Amndeep7
    First of all, thank you for looking at this question. For a school assignment we're supposed to create a BFS algorithm and use it to do various things. One of these things is that we're supposed to find all of the paths between the root and the goal nodes of a graph. I have no idea how to do this as I can't find a way to keep track of all of the alternate routes without also including copies/cycles. Here is my BFS code: def makePath(predecessors, last): return makePath(predecessors, predecessors[last]) + [last] if last else [] def BFS1b(node, goal): Q = [node] predecessor = {node:None} while Q: current = Q.pop(0) if current[0] == goal: return makePath(predecessor, goal) for subnode in graph[current[0]][2:]: if subnode[0] not in predecessor: predecessor[subnode[0]] = current[0] Q.append(subnode[0]) A conceptual push in the right direction would be greatly appreciated. tl;dr How do I use BFS to find all of the paths between two nodes?

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  • django admin site - filtering available objects for user

    - by JPG
    I have models that belong to some 'group' (Company class). I want to add users, who will also belong to a one group and should be able to edit/manage/add objects with membership in associated group. something like: class Company() class Something() company = ForeignKey(Company) user Microsoft_admin company = ForeignKey(Company) and this user should only see and edit objects belonging to associated Company in the Admin Interface. How to acomplish that?

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  • Simple App Engine Sessions Implementation

    - by raz0r
    Here is a very basic class for handling sessions on App Engine: """Lightweight implementation of cookie-based sessions for Google App Engine. Classes: Session """ import os import random import Cookie from google.appengine.api import memcache _COOKIE_NAME = 'app-sid' _COOKIE_PATH = '/' _SESSION_EXPIRE_TIME = 180 * 60 class Session(object): """Cookie-based session implementation using Memcached.""" def __init__(self): self.sid = None self.key = None self.session = None cookie_str = os.environ.get('HTTP_COOKIE', '') self.cookie = Cookie.SimpleCookie() self.cookie.load(cookie_str) if self.cookie.get(_COOKIE_NAME): self.sid = self.cookie[_COOKIE_NAME].value self.key = 'session-' + self.sid self.session = memcache.get(self.key) if self.session: self._update_memcache() else: self.sid = str(random.random())[5:] + str(random.random())[5:] self.key = 'session-' + self.sid self.session = dict() memcache.add(self.key, self.session, _SESSION_EXPIRE_TIME) self.cookie[_COOKIE_NAME] = self.sid self.cookie[_COOKIE_NAME]['path'] = _COOKIE_PATH print self.cookie def __len__(self): return len(self.session) def __getitem__(self, key): if key in self.session: return self.session[key] raise KeyError(str(key)) def __setitem__(self, key, value): self.session[key] = value self._update_memcache() def __delitem__(self, key): if key in self.session: del self.session[key] self._update_memcache() return None raise KeyError(str(key)) def __contains__(self, item): try: i = self.__getitem__(item) except KeyError: return False return True def _update_memcache(self): memcache.replace(self.key, self.session, _SESSION_EXPIRE_TIME) I would like some advices on how to improve the code for better security. Note: In the production version it will also save a copy of the session in the datastore. Note': I know there are much more complete implementations available online though I would like to learn more about this subject so please don't answer the question with "use that" or "use the other" library.

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  • Wordpress & Django -- One domain, two servers. Possible?

    - by DomoDomo
    My question is about hosting Django and Wordpress under one domain, but two physical machines (actually, they are VMs but same diff). Let's say I have a Django webapp at example.com. I'd like to start a Wordpress blog about my webapp, so any blog page rank mojo flows back to my webapp, I'd like the blog address t be example.com/blog. My understanding is blog.example.com would not transfer said page rank mojo. Because I'm worried about Wordpress security flaws compromising my Django webapp, I want to host Django and Wordpress on two physically separate machines. Given all that, is it possible using re-write rules or a reverse proxy server to do this? I know the easy way is to make my Wordpress blog a subdomain, but I really don't want to do that. Has anyone done this in the past, is it stable? If I need a third server to be a dedicated reverse proxy, that's totally fine. Thanks!

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  • How to cutomize a modelform widget in django 1.1?

    - by muudscope
    I'm trying to modify a django form to use a textarea instead of a normal input for the "address" field in my house form. The docs seem to imply this changed from django 1.1 (which I'm using) to 1.2. But neither approach is working for me. Here's what I've tried: class HouseForm(forms.ModelForm): address = forms.Textarea() # Should work with django 1.1, but doesn't class Meta: model = House #widgets = { 'address': forms.Textarea() } # 1.2 style - doesn't work either.

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  • Django: How do I get logging working?

    - by swisstony
    I've added the following to my settings.py file: import logging ... logging.basicConfig(level=logging.DEBUG, format='%(asctime)s %(levelname)s %(message)s', filename=os.path.join(rootdir, 'django.log'), filemode='a+') And in views.py, I've added: import logging log = logging.getLogger(__name__) ... log.info("testing 123!") Unfortunately, no log file is being created. Any ideas what I am doing wrong? And also is their a better method I should be using for logging? I am doing this on Webfaction.

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  • how to detect escape characters in a string

    - by mix
    Given a string named line whose raw version has this value: \rRAWSTRING how can I detect if it has the escape character \r? What I've tried is: if repr(line).startswith('\r'): blah... but it doesn't catch it. I also tried find, such as: if repr(line).find('\r') != -1: blah doesn't work either. What am I missing? thx!

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  • How to use traceit to report function input variables in stack trace

    - by reckoner
    Hi, I've been using the following code to trace the execution of my programs: import sys import linecache import random def traceit(frame, event, arg): if event == "line": lineno = frame.f_lineno filename = frame.f_globals["__file__"] if filename == "<stdin>": filename = "traceit.py" if (filename.endswith(".pyc") or filename.endswith(".pyo")): filename = filename[:-1] name = frame.f_globals["__name__"] line = linecache.getline(filename, lineno) print "%s:%s:%s: %s" % (name, lineno,frame.f_code.co_name , line.rstrip()) return traceit def main(): print "In main" for i in range(5): print i, random.randrange(0, 10) print "Done." sys.settrace(traceit) main() Using this code, or something like it, is it possible to report the values of certain function arguments? In other words, the above code tells me "which" functions were called and I would like to know "what" the corresponding values of the input variables for those function calls. Thanks in advance.

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  • django url matching

    - by ben
    can anyone see why this wouldn't be working. Fairly new to django so any help would be much appreciated actual url: http://127.0.0.1:8000/2010/may/12/my-second-blog-post/ urls.py: (r'(?P<year>d{4})/(?P<month>[a-z]{3})/(?P<day>w{1,2})/(?P<slug>[-w]+)/$', 'object_detail', dict(info_dict, slug_field='slug',template_name='blog/detail.html')),

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  • Access to field in extended flatpage in django

    - by Stanislav Feldman
    How to access field in extended flatpage in django? I wrote this: class ExtendedFlatPage(FlatPage): teaser = CharField(max_length=150) class ExtendedFlatPageForm(FlatpageForm): teaser = CharField(max_length=150) class Meta: model = ExtendedFlatPage class ExtendedFlatPageAdmin(FlatPageAdmin): form = ExtendedFlatPageForm fieldsets = ( (None, {'fields': ('url', 'title', 'teaser', 'content', 'sites',)}), ) admin.site.unregister(FlatPage) admin.site.register(ExtendedFlatPage, ExtendedFlatPageAdmin) And creation in admin is ok. But then in flatpages/default.html I tried this: <html> <body> <h1>{{ flatpage.title }}</h1> <strong>{{ flatpage.teaser }}</strong> <p>{{ flatpage.content }}</p> </body> </html> And there was no flatpage.teaser! What is wrong?

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  • pandas read rotated csv files

    - by EricCoding
    Is there any function in pandas that can directly read a rotated csv file? To be specific, the header information in the first col instead of the first row. For example: A 1 2 B 3 5 C 6 7 and I would like the final DataFrame this way A B C 1 3 5 2 5 7 Of corse we can get around this problem using some data wangling techniques like transpose and slicing. I am wondering there should be a quick way in API but I could not find it.

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  • combine lines from 2 prints to single line and insert into mysql database

    - by bleomycin
    Hello everyone i currently have this: import feedparser d = feedparser.parse('http://store.steampowered.com/feeds/news.xml') for i in range(10): print d.entries[i].title print d.entries[i].date How would i go about making it so that the title and date are on the same line? Also it doesn't need to print i just have that in there for testing, i would like to dump this output into a mysql db with the title and date, any help is greatly appreciated!

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  • How to exclude results with get_object_or_404?

    - by googletorp
    In Django you can use the exclude to create SQL similar to not equal. An example could be. Model.objects.exclude(status='deleted') Now this works great and exclude is very flexible. Since I'm a bit lazy, I would like to get that functionality when using get_object_or_404, but I haven't found a way to do this, since you cannot use exclude on get_object_or_404. What I want is to do something like this: model = get_object_or_404(pk=id, status__exclude='deleted') But unfortunately this doesn't work as there isn't an exclude query filter or similar. The best I've come up with so far is doing something like this: object = get_object_or_404(pk=id) if object.status == 'deleted': return HttpResponseNotfound('text') Doing something like that, really defeats the point of using get_object_or_404, since it no longer is a handy one-liner. Alternatively I could do: object = get_object_or_404(pk=id, status__in=['list', 'of', 'items']) But that wouldn't be very maintainable, as I would need to keep the list up to date. I'm wondering if I'm missing some trick or feature in django to use get_object_or_404 to get the desired result?

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  • Getting child elements that are related to a parent in same table

    - by Madawar
    I have the following database schema class posts(Base): __tablename__ = 'xposts' id = Column(Integer, primary_key=True) class Comments(Base): __tablename__ = 'comments' id = Column(Integer, primary_key=True) comment_parent_id=Column(Integer,unique=True) #comment_id fetches comment of a comment ie the comment_parent_id comment_id=Column(Integer,default=None) comment_text=Column(String(200)) Values in database are 1 12 NULL Hello First comment 2 NULL 12 First Sub comment I want to fetch all Comments and sub comments of a post using sqlalchemy and have this so far qry=session.query(Comments).filter(Comments.comment_parent_id!=None) print qry.count() Is there a way i can fetch the all the subcomments of a comment in a query i have tried outerjoin on the same table(comments) and it seemed stupid and it failed.

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