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  • Elegant way of parsing Data files for Simulation

    - by sc_ray
    I am working on this project where I need to read in a lot of data from .dat files and use the data to perform simulations. The data in my .dat file looks as follows: DeviceID InteractingDeviceID InteractionStartTime InteractionEndTime 1 2 1101 1105 1,2 1101 and 1105 are tab delimited and it means Device 1 interacted with Device 2 at 1101 ms and ended the interaction at 1105ms. I have a trace data sets that compile thousands of such interactions and my job is to analyze these interactions. The first step is to parse the file. The language of choice is C++. The approach I was thinking of taking was to read the file, for every line that's read create a Device Object. This Device object will contain the property DeviceId and an array/vector of structs, that will contain a list of all the devices the given DeviceId interacted with over the course of the simulation.The struct will contain the Interacting Device Id, Interaction Start Time and Interaction End Time. I have a two fold question here: Is my approach correct? If I am on the right track, how do I rapidly parse these tab delimited data files and create Device objects without excessive memory overhead using C++? A push in the right direction will be much appreciated. Thanks

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  • An Efficient data structure for Sorted List

    - by holydiver
    I want to save my objects according to a key in the attributes of my object in a sorted fashion. Later on I'll access these objects sequentially from max key to min key. I'll do some search tasks as well. I consider to use either AVL tree or RB Tree. As far as i know they are nearly equivalent in theory(Both have O(logn)). But in practice which one might be better in performance in my situation. And is there a better alternative than those, considering that I'll mostly do insert and sequentially access to the ds.

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  • Generic dataset handling library

    - by Pep.
    Hello, I want to build a generic Perl module for handling and analysing biomedical character separated datasets and which can, most certain, be used on any kind of datasets that contain a mixture of categorical (A,B,C,..) and continuous (1.2,3,881..) and identifier (XXX1,XXX2...). The plan is to have people initialize the module and then use some arguments to point to the data file(s), the place were the analysis reports should be placed and the structure of the data. By structure of data I mean which variable is in which place and its name/type. And this is where I need some enlightenment. I am baffled how to do this in a clean way. Obviously, having people create a simple schema file, be it XML or some other format would be the cleanest but maybe not all people enjoy doing something like this. The solutions I can think of are: Create a configuration file in XML or similar and with a prespecified format. Pass the information during initialization of the module. Use the first row of the data as headers and try to guess types (ouch) Surely there must be a "canonical" way of doing this that is also usable and efficient. Thanks p.

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  • How to do a range query

    - by Walter H
    I have a bunch of numbers timestamps that I want to check against a range to see if they match a particular range of dates. Basically like a BETWEEN .. AND .. match in SQL. The obvious data structure would be a B-tree, but while there are a number of B-tree implementations on CPAN, they only seem to implement exact matching. Berkeley DB has the same problem; there are B-tree indices, but no range matching. What would be the simplest way to do this? I don't want to use an SQL database unless I have to. Clarification: I have a lot of these, so I'm looking for an efficient method, not just grep over an array.

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  • What is a faster way of merging the values of this Python structure into a single dictionary?

    - by jcoon
    I've refactored how the merged-dictionary (all_classes) below is created, but I'm wondering if it can be more efficient. I have a dictionary of dictionaries, like this: groups_and_classes = {'group_1': {'class_A': [1, 2, 3], 'class_B': [1, 3, 5, 7], 'class_c': [1, 2], # ...many more items like this }, 'group_2': {'class_A': [11, 12, 13], 'class_C': [5, 6, 7, 8, 9] }, # ...and many more items like this } A function creates a new object from groups_and_classes like this (the function to create this is called often): all_classes = {'class_A': [1, 2, 3, 11, 12, 13], 'class_B': [1, 3, 5, 7, 9], 'class_C': [1, 2, 5, 6, 7, 8, 9] } Right now, there is a loop that does this: all_classes = {} for group in groups_and_classes.values(): for c, vals in group.iteritems(): for v in vals: if all_classes.has_key(c): if v not in all_classes[c]: all_classes[c].append(v) else: all_classes[c] = [v] So far, I changed the code to use a set instead of a list since the order of the list doesn't matter and the values need to be unique: all_classes = {} for group in groups_and_classes.values(): for c, vals in group.iteritems(): try: all_classes[c].update(set(vals)) except KeyError: all_classes[c] = set(vals) This is a little nicer, and I didn't have to convert the sets to lists because of how all_classes is used in the code. Question: Is there a more efficient way of creating all_classes (aside from building it at the same time groups_and_classes is built, and changing everywhere this function is called)?

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  • Select all points in a matrix within 30m of another point

    - by pinnacler
    So if you look at my other posts, it's no surprise I'm building a robot that can collect data in a forest, and stick it on a map. We have algorithms that can detect tree centers and trunk diameters and can stick them on a cartesian XY plane. We're planning to use certain 'key' trees as natural landmarks for localizing the robot, using triangulation and trilateration among other methods, but programming this and keeping data straight and efficient is getting difficult using just Matlab. Is there a technique for sub-setting an array or matrix of points? Say I have 1000 trees stored over 1km (1000m), is there a way to say, select only points within 30m radius of my current location and work only with those? I would just use a GIS, but I'm doing this in Matlab and I'm unaware of any GIS plugins for Matlab. I forgot to mention, this code is going online, meaning it's going on a robot for real-time execution. I don't know if, as the map grows to several miles, using a different data structure will help or if calculating every distance to a random point is what a spatial database is going to do anyway. I'm thinking of mirroring two arrays, one sorted by X and the other by Y. Then bubble sorting to determine the 30m range in that. I do the same for both arrays, X and Y, and then have a third cross link table that will select the individual values. But I don't know, what that's called, how to program that and I'm sure someone already has so I don't want to reinvent the wheel. Cartesian Plane GIS

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  • Sparse (Pseudo) Infinite Grid Data Structure for Web Game

    - by Ming
    I'm considering trying to make a game that takes place on an essentially infinite grid. The grid is very sparse. Certain small regions of relatively high density. Relatively few isolated nonempty cells. The amount of the grid in use is too large to implement naively but probably smallish by "big data" standards (I'm not trying to map the Internet or anything like that) This needs to be easy to persist. Here are the operations I may want to perform (reasonably efficiently) on this grid: Ask for some small rectangular region of cells and all their contents (a player's current neighborhood) Set individual cells or blit small regions (the player is making a move) Ask for the rough shape or outline/silhouette of some larger rectangular regions (a world map or region preview) Find some regions with approximately a given density (player spawning location) Approximate shortest path through gaps of at most some small constant empty spaces per hop (it's OK to be a bad approximation often, but not OK to keep heading the wrong direction searching) Approximate convex hull for a region Here's the catch: I want to do this in a web app. That is, I would prefer to use existing data storage (perhaps in the form of a relational database) and relatively little external dependency (preferably avoiding the need for a persistent process). Guys, what advice can you give me on actually implementing this? How would you do this if the web-app restrictions weren't in place? How would you modify that if they were? Thanks a lot, everyone!

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  • Binary Search Tree for specific intent

    - by Luís Guilherme
    We all know there are plenty of self-balancing binary search trees (BST), being the most famous the Red-Black and the AVL. It might be useful to take a look at AA-trees and scapegoat trees too. I want to do deletions insertions and searches, like any other BST. However, it will be common to delete all values in a given range, or deleting whole subtrees. So: I want to insert, search, remove values in O(log n) (balanced tree). I would like to delete a subtree, keeping the whole tree balanced, in O(log n) (worst-case or amortized) It might be useful to delete several values in a row, before balancing the tree I will most often insert 2 values at once, however this is not a rule (just a tip in case there is a tree data structure that takes this into account) Is there a variant of AVL or RB that helps me on this? Scapegoat-trees look more like this, but would also need some changes, anyone who has got experience on them can share some thougts? More precisely, which balancing procedure and/or removal procedure would help me keep this actions time-efficient?

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  • How do I detect a loop in this linked list?

    - by jjujuma
    Say you have a linked list structure in Java. It's made up of Nodes: class Node { Node next; // some user data } and each Node points to the next node, except for the last Node, which has null for next. Say there is a possibility that the list can contain a loop - i.e. the final Node, instead of having a null, has a reference to one of the nodes in the list which came before it. What's the best way of writing boolean hasLoop(Node first) which would return true if the given Node is the first of a list with a loop, and false otherwise? How could you write so that it takes a finite amount of space and a reasonable amount of time?

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  • What Data structure for Reputation Rules in C# (like stackoverflow)

    - by optician
    I am currently building a system which will have entities that will have scores like reputation etc.. I will have a service that will check for certain rules having been triggered, and will perform certain logic if they are triggered. Previously I have used say an Enum for doing this when I have only had to store an id and a description. public enum ShoppingCratCalculation { PartialCalculation = 1, CompleteCalculation =2 } But in this situation I want to carry more information, such as the modification to reputation, all in one place. I'm essentially asking what data structure would be best suited to storing this information, for each rule in the system. 1. Description = string ("User forgot to write a review") 2. DB id = int (23) 3. Rep score modification = int (-5) Maybe a little class (Rule) with these as properties , and then just a list? Does anyone have any best practice suggestions for this kind of struct?

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  • Best data-structure to use for two ended sorted list

    - by fmark
    I need a collection data-structure that can do the following: Be sorted Allow me to quickly pop values off the front and back of the list Remain sorted after I insert a new value Allow a user-specified comparison function, as I will be storing tuples and want to sort on a particular value Thread-safety is not required Optionally allow efficient haskey() lookups (I'm happy to maintain a separate hash-table for this though) My thoughts at this stage are that I need a priority queue and a hash table, although I don't know if I can quickly pop values off both ends of a priority queue. I'm interested in performance for a moderate number of items (I would estimate less than 200,000). Another possibility is simply maintaining an OrderedDictionary and doing an insertion sort it every-time I add more data to it. Furthermore, are there any particular implementations in Python. I would really like to avoid writing this code myself.

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  • Django Database design -- Is this a good stragety for overriding defaults

    - by rh0dium
    Hi SO's I have a question on good database design practices and I would like to leverage you guys for pointers. The project started out simple. Hey we have a bunch of questions we want answered for every project (no problem) Which turned into... Hey we have so many questions can we group them into sections (yup we can do that) Which lead into.. Can we weight these questions and I don't really want some of these questions for my project (Yes but we are getting difficult) And then I'm thinking they will want to have each section have it's own weight.. Requirements So there's the requirements - For n number of project Allow a admin member the ability select the questions for a project Allow the admin member to re-weigh or use the default weights for the questions Allow the admin member to re-weight the sections Allow team members to answer the questions. So here is what I came up with. Please feel free to comment and provide better examples models.py from django.db import models from django.contrib.sites.models import Site from django.conf import settings class Section(models.Model): """ This describes the various sections for a checklist: """ name = models.CharField(max_length=64) description = models.TextField() class Question(models.Model): """ This simply provides a simple way to list out the questions. """ question = models.CharField(max_length=255) answer_type = models.CharField(max_length=16) description = models.TextField() section = models.ForeignKey(Section) class ProjectQuestion(models.Model): """ These are the questions relevant to the project """ question = models.ForeignKey(Question) answer = models.CharField(max_length=255) required = models.BooleanField(default=True) weight = models.FloatField(default = XXX) class Project(models.Model): """ Here is where we want to gather our questions """ questions = models.ManyToManyField(ProjectQuestion) Immediate questions: - When I start a project - any ideas on how to "pre-populate" the questions (and ultimately the weights) for the project? - Is there a generally accepted method for doing this process that I am missing? Basically the idea that you refer to the questions overide your own default weight, and store the answer? - It appears that a good chuck of the work will be done in the views and that a lot of checking will need to occur there? Is that OK? Again - feel free to give me better strategies!! Thanks

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  • Does a HashMap retain the order of its elements on the next read if it is constructed as a LinkedHas

    - by javanix
    Suppose I have a Java method that returns a HashMap object. Because a LinkedHashMap is a subclass of HashMap, I can return a LinkedHashMap from this method just fine. On the next "read" action (no adding/removing/modifying of K/V pairs), would iterating over the keys of the resulting method (which returns a HashMap) go in the same order as the originating LinkedHashMap, even though the HashMap lacks the key links?

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  • Point data structure for a sketching application

    - by bebraw
    I am currently developing a little sketching application based on HTML5 Canvas element. There is one particular problem I haven't yet managed to find a proper solution for. The idea is that the user will be able to manipulate existing stroke data (points) quite freely. This includes pushing point data around (ie. magnet tool) and manipulating it at whim otherwise (ie. altering color). Note that the current brush engine is able to shade by taking existing stroke data in count. It's a quick and dirty solution as it just iterates the points in the current stroke and checks them against a distance rule. Now the problem is how to do this in a nice manner. It is extremely important to be able to perform efficient queries that return all points within given canvas coordinate and radius. Other features, such as space usage, should be secondary to this. I don't mind doing some extra processing between strokes while the user is not painting. Any pointers are welcome. :)

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  • Structure accessible by attribute name or index options

    - by Bruno DeGoia
    I am very new to Python, and trying to figure out how to create an object that has values that are accessible either by attribute name, or by index. For example, the way os.stat() returns a stat_result or pwd.getpwnam() returns a struct_passwd. In trying to figure it out, I've only come across C implementations of the above types. Nothing specifically in Python. What is the Python native way to create this kind of object? I apologize if this has been widely covered already. In searching for an answer, I must be missing some fundamental concept that is excluding me from finding an answer.

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  • Processing command-line arguments in prefix notation in Python

    - by ejm
    I'm trying to parse a command-line in Python which looks like the following: $ ./command -o option1 arg1 -o option2 arg2 arg3 In other words, the command takes an unlimited number of arguments, and each argument may optionally be preceded with an -o option, which relates specifically to that argument. I think this is called a "prefix notation". In the Bourne shell I would do something like the following: while test -n "$1" do if test "$1" = '-o' then option="$2" shift 2 fi # Work with $1 (the argument) and $option (the option) # ... shift done Looking around at the Bash tutorials, etc. this seems to be the accepted idiom, so I'm guessing Bash is optimized to work with command-line arguments this way. Trying to implement this pattern in Python, my first guess was to use pop(), as this is basically a stack operation. But I'm guessing this won't work as well on Python because the list of arguments in sys.argv is in the wrong order and would have to be processed like a queue (i.e. pop from the left). I've read that lists are not optimized for use as queues in Python. So, my ideas are: convert argv to a collections.deque and use popleft(), reverse argv using reverse() and use pop(), or maybe just work with the int list indices themselves. Does anyone know of a better way to do this, otherwise which of my ideas would be best-practise in Python?

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  • C++ Class Templates (Queue of a class)

    - by Dalton Conley
    Ok, so I have my basic linked Queue class with basic functions such as front(), empty() etc.. and I have transformed it into a template. Now, I also have a class called Student. Which holds 2 values: Student name and Student Id. I can print out a student with the following code.. Student me("My Name", 2); cout << me << endl; Here is my display function for student: void display(ostream &out) const { out << "Student Name: " << name << "\tStudent Id: " << id << "\tAddress: " << this << endl; } Now it works fine, you can see the basic output. Now I'm declaring a queue like so.. Queue<Student> qstu; Storing data in this queue is fine, I can add new values and such.. now what I'm trying to do is print out my whole queue of students with: cout << qstu << endl; But its simply returning an address.. here is my display function for queues. void display(ostream & out) const { NodePointer ptr; ptr = myFront; while(ptr != NULL) { out << ptr->data << " "; ptr = ptr->next; } out << endl; } Now, based on this, I assume ptr-data is a Student type and I would assume this would work, but it doesn't. Is there something I'm missing? Also, when I Try: ptr->data.display(out); (Making the assumtion ptr-data is of type student, it does not work which tells me I am doing something wrong. Help on this would be much appreciated!

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  • passing array of structs from c# to regular dll

    - by buzz
    Hi there I have a regular dll with the followign fucntion exported. extern "C" __declspec(dllexport) int FindNearestStuff(double _latitude, double _longitude , LocationStruct * locations[]) LocationStruct is very simple struct LocationStruct { long positionIndex; long item; }; I'm tryign to call it from c# using [DllImport("myclever.dll", CharSet = CharSet.None)] private static extern int FindNearestStuff(double _latitude, double _longitude, ref LocationStruct [] locations); Its all cool and funky and i can step into the dll function from the debugger. Inside the dll the LocationStruct array is populated correctly and all is very good. the problem i have is when it returns back from the dll, the LocationStruct array is not coming back with the data - just empty values... what am i missing? cheers Buzz

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  • Strategy to structure a search index in a relational database

    - by neilc
    I am interested in suggestions for building an efficient and robust structure for indexing products in a new database I am building (i'm using MySql) When a product is entered through the form there are three parts I am interested in indexing for searching purposes. The product title The product description Tags The most important is title, followed by tags, followed by the description. I was thinking of using the following structure CREATE TABLE `searchindex` ( `id` INT NOT NULL , `word` VARCHAR( 255 ) NOT NULL , `weighting` INT NOT NULL , `product_id` INT NOT NULL , PRIMARY KEY ( `id` ) ) Then each time a product is created I would split apart the title, description and tags (removing common words) and award them a weighting. Then it is trivial to select out the words and corresponding products and order them by weighting. Is there a better way to do this? I would be worried that this strategy would slow down over time and as the database filled up.

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  • How do you make an in-place construction of a struct casted to array compile in Visual C++ 2008?

    - by Irwin1138
    I'm working with quite a big codebase which compiles fine in linux but vc++ 2008 spits errors. The problem code goes like this: Declaration: typedef float vec_t; typedef vec_t vec2_t[2]; The codebase is littered with in-place construction like this one: (vec2_t){0, divs} Or more complex: (vec2_t){ 1/(float)Vid_GetScreenW(), 1/(float)Vid_GetScreenH()} As far as I know, this code constructs a struct, then converts it to an array and passes the address to the function. I personally never used in-place construction like this so I have no clue how to make this one work. I don't maintain the linux build, only the windows one. And I can't get it to compile. Is there some switch, some macro to make vc++ compile it? Maybe there is a similar nifty way to construct those arrays and pass them to the functions in-place that compiles just fine in vc++?

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  • Storing a bucket of numbers in an efficient data structure

    - by BlitzKrieg
    I have a buckets of numbers e.g. - 1 to 4, 5 to 15, 16 to 21, 22 to 34,.... I have roughly 600,000 such buckets. The range of numbers that fall in each of the bucket varies. I need to store these buckets in a suitable data structure so that the lookups for a number is as fast as possible. So my question is what is the suitable data structure and a sorting mechanism for this type of problem. Thanks in advance

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  • Parsing Chunk of Data into Hash of Array With Perl

    - by neversaint
    I have data that looks like this: #info #info2 1:SRX004541 Submitter: UT-MGS, UT-MGS Study: Glossina morsitans transcript sequencing project(SRP000741) Sample: Glossina morsitans(SRS002835) Instrument: Illumina Genome Analyzer Total: 1 run, 8.3M spots, 299.9M bases Run #1: SRR016086, 8330172 spots, 299886192 bases 2:SRX004540 Submitter: UT-MGS Study: Anopheles stephensi transcript sequencing project(SRP000747) Sample: Anopheles stephensi(SRS002864) Instrument: Solexa 1G Genome Analyzer Total: 1 run, 8.4M spots, 401M bases Run #1: SRR017875, 8354743 spots, 401027664 bases 3:SRX002521 Submitter: UT-MGS Study: Massive transcriptional start site mapping of human cells under hypoxic conditions.(SRP000403) Sample: Human DLD-1 tissue culture cell line(SRS001843) Instrument: Solexa 1G Genome Analyzer Total: 6 runs, 27.1M spots, 977M bases Run #1: SRR013356, 4801519 spots, 172854684 bases Run #2: SRR013357, 3603355 spots, 129720780 bases Run #3: SRR013358, 3459692 spots, 124548912 bases Run #4: SRR013360, 5219342 spots, 187896312 bases Run #5: SRR013361, 5140152 spots, 185045472 bases Run #6: SRR013370, 4916054 spots, 176977944 bases What I want to do is to create a hash of array with first line of each chunk as keys and SR## part of lines with "^Run" as its array member: $VAR = { 'SRX004541' => ['SRR016086'], # etc } But why my construct doesn't work. And it must be a better way to do it. use Data::Dumper; my %bighash; my $head = ""; my @temp = (); while ( <> ) { chomp; next if (/^\#/); if ( /^\d{1,2}:(\w+)/ ) { print "$1\n"; $head = $1; } elsif (/^Run \#\d+: (\w+),.*/){ print "\t$1\n"; push @temp, $1; } elsif (/^$/) { push @{$bighash{$head}}, [@temp]; @temp =(); } } print Dumper \%bighash ;

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