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  • Creating multiple csv files from data within a csv file.

    - by S1syphus
    System OSX or Linux I'm trying to automate my work flow at work, each week I receive an excel file, which I convert to a csv. An example is: ,,L1,,,L2,,,L3,,,L4,,,L5,,,L6,,,L7,,,L8,,,L9,,,L10,,,L11, Title,r/t,needed,actual,Inst,needed,actual,Inst,needed,actual,Inst,needed,actual,Inst,neede d,actual,Inst,needed,actual,Inst,needed,actual,Inst,needed,actual,Inst,needed,actual,Inst,needed,actual,Inst,needed,actual,Inst EXAMPLEfoo,60,6,6,6,0,0,0,0,0,0,6,6,6,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 EXAMPLEbar,30,6,6,12,6,7,14,6,6,12,6,6,12,6,8,16,6,7,14,6,7.5,15,6,6,12,6,8,16,6,0,0,6,7,14 EXAMPLE1,60,3,3,3,3,5,5,3,4,4,3,3,3,3,6,6,3,4,4,3,3,3,3,4,4,3,8,8,3,0,0,3,4,4 EXAMPLE2,120,6,6,3,0,0,0,6,8,4,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 EXAMPLE3,60,6,6,6,6,8,8,6,6,6,6,6,6,0,0,0,0,0,0,6,8,8,6,6,6,0,0,0,0,0,0,0,10,10 EXAMPLE4,30,6,6,12,6,7,14,6,6,12,6,6,12,3,5.5,11,6,7.5,15,6,6,12,6,0,0,6,9,18,6,0,0,6,6.5,13 And so you can get a picture of how it looks in excel: What I need to do, is create multiple csv files for each instance in row 1, so L1, L2, L3, L4... And within that each csv file it needs to contain the title, r/t, needed So for L1 an example out put would look like: EXAMPLEfoo,60,6 EXAMPLEbar,30,6 EXAMPLE1,60,3 EXAMPLE2,120,6 EXAMPLE3,60,6 EXAMPLE4,30,6 And for L2: EXAMPLEfoo,60,0 EXAMPLEbar,30,6 EXAMPLE1,60,3 EXAMPLE2,120,0 EXAMPLE3,60,6 EXAMPLE4,30,6 And so on. I have tried playing around with sed and awk and hit google but I have found nothing that really solves the issue. I'd imagine perl would be particular suited to this or maybe python, so I would be more than happy to accept suggestions from users. So, any suggestions? Thanks in advance.

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  • How can I return the number of rows affected in sqlplus to a shell script?

    - by jessica
    Here is my shell script: # Deletes data from the 'sample' table starting August 30, 2011. # This is done in stages with a 7 second break every # 2 seconds or so to free up the database for other users. # The message "Done." will be printed when there are # no database entries left to delete. user="*****" pass="*****" while(true); do starttime=`date +%s` while [[ $((`date +%s` - $starttime)) -lt 2 ]]; do sqlplus $user/$pass@//blabla <<EOF whenever sqlerror exit 1 delete from sample where sampletime >= to_date('08-30-2011','mm-dd-yyyy') and rownum <= 2; commit; EOF rows = ??? if [ $rows -eq 0 ] ; then echo "Done." exit 0; fi done sleep 7 done If there is no way to get the number of rows, maybe I can use an error code returned by sqlplus to figure out when to end the script? Any thoughts? Thank you!

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  • What size of folders show ls -la

    - by Bkmz
    Hi. I'm interesting in information what show me output ls -la in linux. So, default size is 4K. But if there are a lot of files, maybe with zero size, such as PHP sessions =), the size != 4K. What showing me ls -la? And after, when i clean this folder i see tha last max size.

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  • shell scripting: nested subshell ++

    - by jhon
    Hi guys, more than a problem, this is a request for "another way to do this" actually, if a want to use the result from a previous command I into another one, I use: R1=$("cat somefile | awk '{ print $1 }'" ) myScript -c $R1 -h123 then, a "better way"is: myScript -c $("cat somefile | awk '{ print $1 }'" ) -h123 but, what if I have to use several times the result, let's say: using several times $R1, well the 2 options: option 1 R1=$("cat somefile | awk '{ print $1}'") myScript -c $R1 -h123 -x$R1 option 2 myScript -c $("cat somefile | awk '{ print $1 }'" ) -h123 -x $("cat somefile | awk '{ print $1 }'" ) do you know another way to "store" the result of a previous command/script and use it as a argument into another command/script? thanks

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  • Sorting tab delimited text file based on multiple columns in natural way [duplicate]

    - by Vignesh
    This question already has an answer here: Sorting a column of CSV file resulting in 1123 appearing before 232 1 answer I am trying to sort a file based on all two columns Eg: chr19 1070019 1070020 chr16 869712 869713 chr1 1378131 1378132 chr12 189386 189387 chr4 254941 254942 chr16 1476500 1476501 chr2 1476810 1476811 chr19 313283 313284 chr17 595817 595818 chr18 656897 656898 chr19 1061829 1061830 I Tried sort -t $\t -k1,1 2,2 <filename> but doesn't work. I want the output to be sorted by first column and second column based on first column. I want to do a natural sort. Not lexical sorting. Eg: chr1 1378131 1378132 chr2 1476810 1476811 chr4 254941 254942 chr12 189386 189387 chr16 869712 869713 chr16 1476500 1476501 chr17 595817 595818 chr18 656897 656898 chr19 313283 313284 chr19 1061829 1061830 chr19 1070019 1070020 Anyone any idea?

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  • Using terminal to record/save a data stream

    - by jonhurlock
    I want to be able to save a data stream which i am returning using the curl command. I have tried using the cat command, and piping it the curl command, however i'm doing it wrong. The code im currently using is: cat > file.txt | curl http://datastream.com/data Any help would be appreciated.

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  • escape from a linux cli for loop

    - by aidan
    I'm doing something like this: for f in `find -iname '*.html'`; do scp $f remoteserver:$f; done; I've got through about 3 of the 1000 files and I've decided I want to abort the operation. CTRL+C only escapes the SCP login prompt and takes me to the next one, rather than escaping the for loop. Is there a better way than hitting CTRL+C 9997 times? Thanks!

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  • Inserting text in a file from a variable

    - by user754905
    I have a file that looks something like this: ABC DEF GHI I have a shell variable that looks something like this: var="MRD" What I want to do, is to make my file look like this: ABC MRD DEF GHI I was trying to do this: sed -i -e 's/ABC/&$var/g' text.txt but it only inserts $var instead of the value. I also tried this: sed -i -e 's/ABC/&"$var"/g' text.txt but that didn't work either. Any thoughts? Thanks!

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  • Running an array of processes

    - by User1
    I have the following array: procs=( 'one a b c' 'two d e f' 'three g h i' ) I try run these processes from a loop (using echo instead of eval so I can debug): for proc in ${procs[@]} do echo $proc done I get: one a b c two d e f three g h i I wanted: one a b c two d e f three g h i What went wrong?

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  • sed replacement does not work

    - by Robin Hood
    Hello, I have trouble using sed. I need to replace some lines in very deprecated HTML sites which consist of many files. My script does not work and I do not why. When I tried to find exact pattern with Netbeas it worked. find . -type f -name "*.htm?" -exec sed -i -r 's/ing\. Šuhajda Dušan\, Mírová 767\, 518 01 Dobruška\, \+420 737 980 333\,/REPLACEMENT/g' {} \; Where is the mistake? Is there an alternative to replace text without searching regular expression but plain text? Thanks for any respond.

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  • Force line-buffering of stdout when piping to tee

    - by houbysoft
    Usually, stdout is line-buffered. In other words, as long as your printf argument ends with a newline, you can expect the line to be printed instantly. This does not appear to hold when using a pipe to redirect to tee. I have a C++ program, a, that outputs strings, always \n-terminated, to stdout. When it is run by itself (./a), everything prints correctly and at the right time, as expected. However, if I pipe it to tee (./a | tee output.txt), it doesn't print anything until it quits, which defeats the purpose of using tee. I know that I could fix it by adding a fflush(stdout) after each printing operation in the C++ program. But is there a cleaner, easier way? Is there a command I can run, for example, that would force stdout to be line-buffered, even when using a pipe?

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  • I have an Errno 13 Permission denied with subprocess in python

    - by wDroter
    The line with the issue is ret=subprocess.call(shlex.split(cmd)) cmd = /usr/share/java -cp pig-hadoop-conf-Simpsons:lib/pig-0.8.1-cdh3u1-core.jar:lib/hadoop-core-0.20.2-cdh3u1.jar org.apache.pig.Main -param func=cat -param from =foo.txt -x mapreduce fsFunc.pig The error is. File "./run_pig.py", line 157, in process ret=subprocess.call(shlex.split(cmd)) File "/usr/lib/python2.7/subprocess.py", line 493, in call return Popen(*popenargs, **kwargs).wait() File "/usr/lib/python2.7/subprocess.py", line 679, in __init__ errread, errwrite) File "/usr/lib/python2.7/subprocess.py", line 1249, in _execute_child raise child_exception OSError: [Errno 13] Permission denied Let me know if any more info is needed. Any help is appreciated. Thanks.

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  • Sort command not working as expected

    - by user964689
    If anybody can help me to write a loop to iterate over files in a folder it would save me a huge amount of time. I think it must be quite a simple solution ,but I currently don't know how to nest a loop within a loop. So far I have this script: cd /folderlocation/ for i in `</textfile_containing_lines_to_iterate_through` do #size=`echo $i | perl -nE '/:([\d-]+)/ && say abs(eval $1)'` #echo "$size" zcat dataset | head -n 18 > temp"$i".vcf tabix dataset $i >> temp"$i".vcf vcftools --window-pi 1000000 --vcf temp10individuals"$i".vcf >> run_summary.txt cat out.windowed.pi >> outputfile_2 #rm temp* done grep -v "PI" outputfile_2 > outputfile rm outputfile_2 I need to expand this so that the script will run multiple times, through all of the 'textfiles_containing_lines_to_iterate_through'. Currently I change the name of the textfile manually each time and re-run the script. So I'd need a loop that does this for file in folder, and also that uses the name of the file as part of the outputfile name so that I can match an output file to an inputfile. Any help would be really useful and greatly appreciated! Many thanks in advance.

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  • Tee a Pipe Asynchronously

    - by User1
    I would like to write the same information to two pipes, but I don't want to wait for the first pipe to read. Here's an example mkfifo one mkfifo two echo hi | tee one two & cat one & cat two & cat one does not start reading until cat two is run. Is there a way to make cat one run without waiting?

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  • Accessing variable from ARGV

    - by snaken
    I'm writing a cPanel postwwwact script, if you're not familiar with the script its run after a new account is created. it relies on the user account variable being passed to the script which i then use for various things (creating databases etc). However, I can't seem to find the right way to access the variable i want. I'm not that good with shell scripts so i'd appreciate some advice. I had read somewhere that the value i wanted would be included in $ARGV{'user'} but this simply gives "root" as opposed to the value i need. I've tried looping through all the arguments (list of arguments here) like this: #!/bin/sh for var do touch /root/testvars/$var done and the value i want is in there, i'm just not sure how to accurately target it. There's info here on doing this with PHP or Perl but i have to do this as a shell script. EDIT Ideally i would like to be able to call the variable by something other than $1 or $2 etc as this would create issues if an argument is added or removed Any ideas?

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  • Is there a reasonable way to attach new path to PATH in bashrc?

    - by Ripley
    Guys I constantly need to attach new paths to the PATH environment variable in .bashrc, like below: export PATH=/usr/local/bin:$PATH Then to make it take effect, I always do 'source ~/.bashrc' or '. ~/.bashrc', while I found one shortcoming of doing so which make me uncomfortable. If I keep doing so, the PATH will getting longer and longer with many duplicated entries, for example in the previous command, if I source it twice, the value of PATH will be PATH=/usr/local/bin:/usr/local/bin:/usr/local/bin:$PATH(<-the original path). Is there a more decent way to attach new path to PATH in bashrc without making it ugly?

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  • How do I send a file as an email attachment using Linux command line?

    - by Kit Roed
    I've created a script that runs every night on my Linux server that uses mysqldump to back up each of my MySQL databases to .sql files and packages them together as a compressed .tar file. The next step I want to accomplish is to send that tar file through email to a remote email server for safekeeping. I've been able to send the raw script in the body an email by piping the backup text file to mailx like so: $ cat mysqldbbackup.sql | mailx [email protected] cat echoes the backup file's text which is piped into the mailx program with the recipient's email address passed as an argument. While this accomplishes what I need, I think it could be one step better, Is there any way, using shell scripts or otherwise, to send the compressed .tar file to an outgoing email message as an attachment? This would beat having to deal with very long email messages which contain header data and often have word-wrapping issues etc.

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  • Find directories not containing a specific directory

    - by Morgan ARR Allen
    Been searching around for a bit and cannot find a solution for this one. I guess I'm looking for a leaf-directory by name. In this example I'd like to get a list of directories call 'modules' that do NOT have a subdirectory called module. modules/package1/modules/spackage1 modules/package1/modules/spackage2 modules/package1/modules/spackage3/modules modules/package1/modules/spackage3/modules/spackage1 modules/package2/modules/ The list I desire would contain modules/package1/modules/spackage3/modules/ modules/package2/modules/ All the directories named module that do not have a subdirectory called module I started with trying something this with no luck find . -name modules \! -exec sh -c 'find -name modules' \; -exec works on exit code, okay lets pass the count as exit code find . -name modules -exec sh -c 'exit $(find {} -name modules|grep -n ""|tail -n1|cut -d: -f1)' \; This should take the count of each subdirectory called modules and exit with it. No such love.

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  • search for a string , and add if it matches

    - by Sharat Chandra
    I have a file that has 2 columns as given below.... 101 6 102 23 103 45 109 36 101 42 108 21 102 24 109 67 and so on...... I want to write a script that adds the values from 2nd column if their corresponding first column matches for example add all 2nd column values if it's 1st column is 101 add all 2nd column values if it's 1st colummn is 102 add all 2nd column values if it's 1st colummn is 103 and so on ... i wrote my script like this , but i'm not getting the correct result awk '{print $1}' data.txt > col1.txt while read line do awk ' if [$1 == $line] sum+=$2; END {print "Sum for time stamp", $line"=", sum}; sum=0' data.txt done < col1.txt

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