BioPython: extracting sequence IDs from a Blast output file
- by Jon
Hi,
I have a BLAST output file in XML format. It is 22 query sequences with 50 hits reported from each sequence. And I want to extract all the 50x22 hits. This is the code I currently have, but it only extracts the 50 hits from the first query.
from Bio.Blast import NCBIXM
blast_records = NCBIXML.parse(result_handle)
blast_record =…